Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01023 ATGGAATCCTCTTACTTTTCGTTTTCCGATTCAGATTTCTCGACGGAATCTTCATTCGGATCAGTTGAATCATCGTTCTCATGGAGTGAATTTTTCTCAATCCACAGTGCCCTAGAAAACTCAACCGGAGTCGAAGAATTTCTCGGGAATCAAAAATCGGAATCGGAATCGAAAATCGTAGTGAAAGAAGAAATCGAAGTGAATTCGATTGATTTTAAGGAGGAGAAACAGAGGAAGACGACAGAGAAGAATTACAGGGGAGTGAGACGGCGGCCATGGGGGAAATACGCGGCGGAGATTAGGGATTCAACGAGACATGGAGTTAGGGTTTGGCTTGGAACTTTTGATAGCGCTGAAGCTGCTGCTTTAGCTTATGATCAAGCAGCATTTTCGATGAGAGGAACAATGGCCGTGTTGAACTTTCCGGTGGAAATGGTGAGGGAATCATTACAGGATATTGAGTATCAATTGGAAGAAGGATGTTCGCCGGTGGTAGCCTTGAAGAAGAAACACTCAATGAGAAGGAAGTCGGTGGCGGCGGCGACGGCGGCGGTGGAGAAGAAGAAGATGAAGAAAAAGAACAATGTGGTGATTTTGGAAGATTTGGGAACAGAGTATTTGGAGGAACTTTTGATGTTAAGTTCATGTGAGAGTATAAATCCTTTTTAA 669 43.65 MESSYFSFSDSDFSTESSFGSVESSFSWSEFFSIHSALENSTGVEEFLGNQKSESESKIVVKEEIEVNSIDFKEEKQRKTTEKNYRGVRRRPWGKYAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGTMAVLNFPVEMVRESLQDIEYQLEEGCSPVVALKKKHSMRRKSVAAATAAVEKKKMKKKNNVVILEDLGTEYLEELLMLSSCESINPF 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13957162 13958160 - MELO3C012896.2.1 Cme04g01023 325284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01023 222 CDD AP2 83 143 IPR001471 GO:0003700|GO:0006355
Cme04g01023 222 ProSiteProfiles AP2/ERF domain profile. 84 142 IPR001471 GO:0003700|GO:0006355
Cme04g01023 222 Gene3D AP2/ERF domain 83 144 IPR036955 GO:0003700|GO:0006355
Cme04g01023 222 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Cme04g01023 222 PRINTS Ethylene responsive element binding protein signature 108 124 IPR001471 GO:0003700|GO:0006355
Cme04g01023 222 SUPERFAMILY DNA-binding domain 84 144 IPR016177 GO:0003677
Cme04g01023 222 Pfam AP2 domain 84 134 IPR001471 GO:0003700|GO:0006355
Cme04g01023 222 PANTHER DNA-BINDING DOMAIN 50 213 IPR044808 GO:0003700|GO:0009873
Cme04g01023 222 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 50 213 - -
Cme04g01023 222 SMART rav1_2 84 148 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme01g01969 Cme04g01023 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01969 Cme-Chr1:28057785 Cme04g01023 Cme-Chr4:13957162 1.06E-52 dispersed
Cme04g01023 Cme-Chr4:13957162 Cme05g00557 Cme-Chr5:5448371 6.96E-60 dispersed
Cme04g01023 Cme-Chr4:13957162 Cme06g00500 Cme-Chr6:3151318 2.73E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41178 PF00847 AP2 1.20E-14 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01023 K14516 - csv:101220325 324.709