Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01036 ATGACGGGGTCTGGTTCTCCTTGCGGAGCTTGCAAATTCTTGAGAAGAAAATGTGTAAGGGGATGTGTTTTTGCACCATATTTTTGCCATGAACAAGGTGCTACTCATTTTGCTGCCATTCATAAAGTGTTTGGAGCAAGTAATGTTTCTAAGCTTCTTGCTCGTCTTCCTATTACTGAAAGATGTGAGGCTGCTGTTACTATTTCTTATGAAGCTCAAGCTAGGCTTCAAGATCCTATTTATGGCTGTGTTTCTCATATCTTCGCCCTCCAACAACAGGTTGTGAGTCTTCAGGCACAACTTGCTTCTTTGAAGGAACAAGCAGCGGAAAGCATTATGAACGCGTCCAGTAACGTGGGCGGGGTGAATGAGAAGATCAATAGTAGAAAGGTTCCTTCTCATCCCCAAGATCTTCATAGTTGGTTTCAGTCGGAGCAACCAAATGTAACACTTGAGTTCAACCCAAACCCGACTCCGAATAATAATTGTGCATCAAACACTAATTATTATGATGAGAATTATCGCATTATGGTGAATTCACAATCCAATGGGAACTATGAGAATCATCACATTGCAAAAATGGAGGAAAGTGGATCATATGGAAGCTTTGAAGAAACCTCAGGGTATTCGATGTATACTCTCGATCAATTGCATTCAAATGTTCAACAATGGAGCTTCAGTGATTCAGCTGATGATTTACAATCAGTTGCTTTTGGCAATAGACATTGGTGA 732 40.71 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLARLPITERCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVSLQAQLASLKEQAAESIMNASSNVGGVNEKINSRKVPSHPQDLHSWFQSEQPNVTLEFNPNPTPNNNCASNTNYYDENYRIMVNSQSNGNYENHHIAKMEESGSYGSFEETSGYSMYTLDQLHSNVQQWSFSDSADDLQSVAFGNRHW 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14194325 14195872 + MELO3C012908.2.1 Cme04g01036 325297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01036 243 Coils Coil 87 114 - -
Cme04g01036 243 PANTHER LOB DOMAIN-CONTAINING PROTEIN-RELATED 1 240 - -
Cme04g01036 243 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Cme04g01036 243 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 240 - -
Cme04g01036 243 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01658 Cme-Chr1:22716328 Cme04g01036 Cme-Chr4:14194325 3.80E-62 dispersed
Cme04g01036 Cme-Chr4:14194325 Cme04g01566 Cme-Chr4:22964703 1.30E-51 dispersed
Cme04g01036 Cme-Chr4:14194325 Cme11g02516 Cme-Chr11:31667442 1.06E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41180 PF03195 LOB 1.30E-35 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01036 K13945 - csv:101214764 493.426