Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01038 ATGGAGGCTGGATATGGAGGCGAAGCTTGTCAATTATATGGTATGGGTACTATGGACTTGAGGGCTGCTGTTGGGAAGCGGAATCTGGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTCTTCATTGCTAGGCCTTTAAACACGGTTGAATCTGGTCATTTGAGTAGGCAACTTTTCCCAATCGTTTCTGGGATTCCCCTGACGAACGGGGGTTCGTCGAATAGTTCCTCGTCATGCTCTGATGAAGCTAACATGGGGATTGAGAAAGGGAAAAGGGAAGTGGAGAAGAGGAGGAGGGTTACTGTTATAGAAGATGATAATCTTAATGATGAAGCACGTAATTTGAGTTTGAAGGTTGGTGGAAATGGTTCTCAGATTGTTGAGAGAGATGCAGGGAGTTGGGAAGGAACCAGTGGGAAGAAGACAAAATTGGCTGGGGGAAATTCAAATCGTGCAGTTTGCCAGGTAGAGGACTGTGGAGCAGATCTGAGCAATGCGAAAGATTACCACAGACGACATAAAGTCTGTGAAACACATTCTAAGGCGAGTAATGCACTTGTTGCTAATGTTATGCAGCGATTCTGTCAACAATGTAGCAGGTTCCATGTTCTTCAAGAGTTTGATGAAGGGAAACGAAGTTGTCGCAGGCGTTTGGCTGGCCATAATAAGCGCAGAAGAAAAATTAATCCAGATAATGTTGTTAATGGAAACTCCCCACCTGACGAGCAGACTACCAATGGATCAAATCAGACCACAGATCAGGATCTTCTTTCTCATCTTATACGAAGTCTTGCCTGCCAATCTAGTGAGCATGGGAGAAAAAACCTATCTGGGATTCTGCACGAACCGCAGAATTTGCTGAACAATGGGTCATTAAGTGGTAAATCAGATCTAGTTTCTACTTTTCTCTCAAATGGTCCTCAGGTTCCTTTGAGATCTTCTAAACAACATGACACCCCTATACCTGAGACACCGGCACAAGCCATTGGTAGGGGTGGTGATACACCAGCTATATCTTCTATTAAACCAAGCACTTCAAACAGCCCTCCCGCATATTCTGAAATCAGGGACAGTACAGTTGGGCAGTGCAAGATGATGAACTTCGATCTGAACGATGCTTATGTTGACTCAGACGATGGCATGGAAGATATTGAAAGACAAACACTCCCAGTGCACATGGGAACAAGTTCTCTTGAATGTCCTTCTTGGGTGCAACAGGACTCTCATCAGTCAAGTCCTCCTCAAACTAGTGGAAATTCAGATTCAGCTTCTGCCCAGTCACCTTCAAGCTCTGCTGGAGAAGCCCAGAGCCGCACAGATCGCATCATTTTGAAATTATTTGGGAAAGCACCGAATGATTTTCCTCATGTTTTGCGAGCTCAGGTTCTCGATTGGTTATCGCACAGTCCCACAGAGATAGAGAGCTATATCAGGCCTGGTTGTGTTATTTTAACAATATACTTACGGCAGACCGAAGCTGCTTGGGACAATCTTTGCCATGACCTCAGTACCAGTTTTAATAGGCTTCTTGATGTTTCGGATGATGCTTTTTGGAAAACTGGATGGGTTTATGTGCGGGTTGTAGTTGACACCTCCTTGCCTCTTAGAAACAATAATTACTGTAGGATCACAAGTGTAAACCCTGTTGCCGTTTCTACATCTAAGAAGGCTATATTTTCAGTCAAAGGAATAAACTTAAGCCAACCTACAACTAGGTTACTCTGTGCAATTGAAGGGAAATATCTAACTCAGGAAGCTTCAGATGAGTCAACAGAAAGTGATGATAACTTGAAAGCGCAGGATGACAGCCTATGTGTTACCTTTTCCTGCTCTATTCCTGTTGTCTATGGAAGGGGATTCATTGAGGTTGAAGATGATGGTTTTAGCAGCAGCTCCTTTCCTTTTATAGTTGCAGAGGAGGACGTTTGTTCTGAGATCTGCTCACTTCAGAGTGCATTAGAATTAACTGAAACATGTTCAAATTCCGGGGAAACTGCAGAGCTGGAAGGAAGGAGTAATGCGATGGAATTTATTCATGAAATTGGTTGGCTATTCCATAGAAATCAATTGAAATCTAGATTAGGCCACTTGGATCCTAATGAAAATCTCTTTTCACTGCCACGGTTCAAGTGGCTCATGGAGTTCTCCATGGATCATGATTGGTGTGCTGTGGTTAAAAAGCTGTTGGATATTCTTCAAGATGGGACCGTGGATGCTGGAGGTCACCCCTCCTTGAACCTCGCATTGATGGAGATGGGTCTACTTCACCGAGCAGTGAGAAAAAATAGTAGATCACTGGTAGAGCTCCTTTTGAGATATCCTTCAAAAGTGAACGATGCATCAAGTTCTGAAGACAGTGCATCTGTTGATGGAGAGACTGATAGTTTCCTGTTTAGACCTAATGTCGTAGGCCCAGCTGGTTTAACCCCTCTTCACATTGCAGCTGGTAAAGATGATTCCGAGGACGTTCTTGATGCATTAACCAATGACCCGGGAATGGTGGGAATTGAGGCTTGGAAGAGTGCTCGAGATAGCACAGGCTCAACGCCAGAGGATTATGCCCGTTTACGTGGCCATTACTCTTATATTCGCCTTGTCCAGAGGAAAATCAACAAGAGATCTGCAGCTGGTCATGTAGTGCTGGATATTCCTAGTTCTCTCTCAGATGGTAGCTGGAATCAAAAGCAGAACACTGATTTTACCTCCTCCAGGTTTGAGATTGGTAGGACGGAACTAAAACCTAGTCAGCAGCATTGCAAGCTTTGTGTTAGGAAACCGCTGGGTTGTGGAACATCATCTAGCGCGTCTTTGGTCTACAGGCCAGCAATGCTTTCGATGGTGGCCATTGCTGCTGTTTGTGTTTGTGTGGCACTCCTATTTAAAAGCTCGCCCGAGGTTCTCTATGTCTTCCGGCCCTTCCGATGGGAACTATTAGATTACGGTACTAGTTAG 2958 44.39 MEAGYGGEACQLYGMGTMDLRAAVGKRNLEWDLNDWKWDGDLFIARPLNTVESGHLSRQLFPIVSGIPLTNGGSSNSSSSCSDEANMGIEKGKREVEKRRRVTVIEDDNLNDEARNLSLKVGGNGSQIVERDAGSWEGTSGKKTKLAGGNSNRAVCQVEDCGADLSNAKDYHRRHKVCETHSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKINPDNVVNGNSPPDEQTTNGSNQTTDQDLLSHLIRSLACQSSEHGRKNLSGILHEPQNLLNNGSLSGKSDLVSTFLSNGPQVPLRSSKQHDTPIPETPAQAIGRGGDTPAISSIKPSTSNSPPAYSEIRDSTVGQCKMMNFDLNDAYVDSDDGMEDIERQTLPVHMGTSSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSAGEAQSRTDRIILKLFGKAPNDFPHVLRAQVLDWLSHSPTEIESYIRPGCVILTIYLRQTEAAWDNLCHDLSTSFNRLLDVSDDAFWKTGWVYVRVVVDTSLPLRNNNYCRITSVNPVAVSTSKKAIFSVKGINLSQPTTRLLCAIEGKYLTQEASDESTESDDNLKAQDDSLCVTFSCSIPVVYGRGFIEVEDDGFSSSSFPFIVAEEDVCSEICSLQSALELTETCSNSGETAELEGRSNAMEFIHEIGWLFHRNQLKSRLGHLDPNENLFSLPRFKWLMEFSMDHDWCAVVKKLLDILQDGTVDAGGHPSLNLALMEMGLLHRAVRKNSRSLVELLLRYPSKVNDASSSEDSASVDGETDSFLFRPNVVGPAGLTPLHIAAGKDDSEDVLDALTNDPGMVGIEAWKSARDSTGSTPEDYARLRGHYSYIRLVQRKINKRSAAGHVVLDIPSSLSDGSWNQKQNTDFTSSRFEIGRTELKPSQQHCKLCVRKPLGCGTSSSASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLDYGTS 985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14261325 14274254 + MELO3C012909.2.1 Cme04g01038 325299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01038 985 MobiDBLite consensus disorder prediction 233 254 - -
Cme04g01038 985 Gene3D - 726 881 IPR036770 -
Cme04g01038 985 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 984 IPR044817 GO:0003677
Cme04g01038 985 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677
Cme04g01038 985 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 17 984 - -
Cme04g01038 985 MobiDBLite consensus disorder prediction 309 357 - -
Cme04g01038 985 SUPERFAMILY SBT domain 154 235 IPR036893 GO:0003677|GO:0005634
Cme04g01038 985 MobiDBLite consensus disorder prediction 340 357 - -
Cme04g01038 985 SUPERFAMILY Ankyrin repeat 753 867 IPR036770 -
Cme04g01038 985 MobiDBLite consensus disorder prediction 220 254 - -
Cme04g01038 985 Pfam SBP domain 156 229 IPR004333 GO:0003677
Cme04g01038 985 MobiDBLite consensus disorder prediction 403 438 - -
Cme04g01038 985 Gene3D - 147 217 IPR036893 GO:0003677|GO:0005634
Cme04g01038 985 MobiDBLite consensus disorder prediction 309 323 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01038 Cme-Chr4:14261325 Cme07g00013 Cme-Chr7:129531 1.53E-35 dispersed
Cme06g00679 Cme-Chr6:4375358 Cme04g01038 Cme-Chr4:14261325 1.24E-22 dispersed
Cme04g01038 Cme-Chr4:14261325 Cme02g01810 Cme-Chr2:24881083 1.76E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41181 PF03110 SBP 7.20E-30 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01038 - - csv:101203103 1883.61