Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01038 ATGGAGGCTGGATATGGAGGCGAAGCTTGTCAATTATATGGTATGGGTACTATGGACTTGAGGGCTGCTGTTGGGAAGCGGAATCTGGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTCTTCATTGCTAGGCCTTTAAACACGGTTGAATCTGGTCATTTGAGTAGGCAACTTTTCCCAATCGTTTCTGGGATTCCCCTGACGAACGGGGGTTCGTCGAATAGTTCCTCGTCATGCTCTGATGAAGCTAACATGGGGATTGAGAAAGGGAAAAGGGAAGTGGAGAAGAGGAGGAGGGTTACTGTTATAGAAGATGATAATCTTAATGATGAAGCACGTAATTTGAGTTTGAAGGTTGGTGGAAATGGTTCTCAGATTGTTGAGAGAGATGCAGGGAGTTGGGAAGGAACCAGTGGGAAGAAGACAAAATTGGCTGGGGGAAATTCAAATCGTGCAGTTTGCCAGGTAGAGGACTGTGGAGCAGATCTGAGCAATGCGAAAGATTACCACAGACGACATAAAGTCTGTGAAACACATTCTAAGGCGAGTAATGCACTTGTTGCTAATGTTATGCAGCGATTCTGTCAACAATGTAGCAGGTTCCATGTTCTTCAAGAGTTTGATGAAGGGAAACGAAGTTGTCGCAGGCGTTTGGCTGGCCATAATAAGCGCAGAAGAAAAATTAATCCAGATAATGTTGTTAATGGAAACTCCCCACCTGACGAGCAGACTACCAATGGATCAAATCAGACCACAGATCAGGATCTTCTTTCTCATCTTATACGAAGTCTTGCCTGCCAATCTAGTGAGCATGGGAGAAAAAACCTATCTGGGATTCTGCACGAACCGCAGAATTTGCTGAACAATGGGTCATTAAGTGGTAAATCAGATCTAGTTTCTACTTTTCTCTCAAATGGTCCTCAGGTTCCTTTGAGATCTTCTAAACAACATGACACCCCTATACCTGAGACACCGGCACAAGCCATTGGTAGGGGTGGTGATACACCAGCTATATCTTCTATTAAACCAAGCACTTCAAACAGCCCTCCCGCATATTCTGAAATCAGGGACAGTACAGTTGGGCAGTGCAAGATGATGAACTTCGATCTGAACGATGCTTATGTTGACTCAGACGATGGCATGGAAGATATTGAAAGACAAACACTCCCAGTGCACATGGGAACAAGTTCTCTTGAATGTCCTTCTTGGGTGCAACAGGACTCTCATCAGTCAAGTCCTCCTCAAACTAGTGGAAATTCAGATTCAGCTTCTGCCCAGTCACCTTCAAGCTCTGCTGGAGAAGCCCAGAGCCGCACAGATCGCATCATTTTGAAATTATTTGGGAAAGCACCGAATGATTTTCCTCATGTTTTGCGAGCTCAGGTTCTCGATTGGTTATCGCACAGTCCCACAGAGATAGAGAGCTATATCAGGCCTGGTTGTGTTATTTTAACAATATACTTACGGCAGACCGAAGCTGCTTGGGACAATCTTTGCCATGACCTCAGTACCAGTTTTAATAGGCTTCTTGATGTTTCGGATGATGCTTTTTGGAAAACTGGATGGGTTTATGTGCGGGTTGTAGTTGACACCTCCTTGCCTCTTAGAAACAATAATTACTGTAGGATCACAAGTGTAAACCCTGTTGCCGTTTCTACATCTAAGAAGGCTATATTTTCAGTCAAAGGAATAAACTTAAGCCAACCTACAACTAGGTTACTCTGTGCAATTGAAGGGAAATATCTAACTCAGGAAGCTTCAGATGAGTCAACAGAAAGTGATGATAACTTGAAAGCGCAGGATGACAGCCTATGTGTTACCTTTTCCTGCTCTATTCCTGTTGTCTATGGAAGGGGATTCATTGAGGTTGAAGATGATGGTTTTAGCAGCAGCTCCTTTCCTTTTATAGTTGCAGAGGAGGACGTTTGTTCTGAGATCTGCTCACTTCAGAGTGCATTAGAATTAACTGAAACATGTTCAAATTCCGGGGAAACTGCAGAGCTGGAAGGAAGGAGTAATGCGATGGAATTTATTCATGAAATTGGTTGGCTATTCCATAGAAATCAATTGAAATCTAGATTAGGCCACTTGGATCCTAATGAAAATCTCTTTTCACTGCCACGGTTCAAGTGGCTCATGGAGTTCTCCATGGATCATGATTGGTGTGCTGTGGTTAAAAAGCTGTTGGATATTCTTCAAGATGGGACCGTGGATGCTGGAGGTCACCCCTCCTTGAACCTCGCATTGATGGAGATGGGTCTACTTCACCGAGCAGTGAGAAAAAATAGTAGATCACTGGTAGAGCTCCTTTTGAGATATCCTTCAAAAGTGAACGATGCATCAAGTTCTGAAGACAGTGCATCTGTTGATGGAGAGACTGATAGTTTCCTGTTTAGACCTAATGTCGTAGGCCCAGCTGGTTTAACCCCTCTTCACATTGCAGCTGGTAAAGATGATTCCGAGGACGTTCTTGATGCATTAACCAATGACCCGGGAATGGTGGGAATTGAGGCTTGGAAGAGTGCTCGAGATAGCACAGGCTCAACGCCAGAGGATTATGCCCGTTTACGTGGCCATTACTCTTATATTCGCCTTGTCCAGAGGAAAATCAACAAGAGATCTGCAGCTGGTCATGTAGTGCTGGATATTCCTAGTTCTCTCTCAGATGGTAGCTGGAATCAAAAGCAGAACACTGATTTTACCTCCTCCAGGTTTGAGATTGGTAGGACGGAACTAAAACCTAGTCAGCAGCATTGCAAGCTTTGTGTTAGGAAACCGCTGGGTTGTGGAACATCATCTAGCGCGTCTTTGGTCTACAGGCCAGCAATGCTTTCGATGGTGGCCATTGCTGCTGTTTGTGTTTGTGTGGCACTCCTATTTAAAAGCTCGCCCGAGGTTCTCTATGTCTTCCGGCCCTTCCGATGGGAACTATTAGATTACGGTACTAGTTAG 2958 44.39 MEAGYGGEACQLYGMGTMDLRAAVGKRNLEWDLNDWKWDGDLFIARPLNTVESGHLSRQLFPIVSGIPLTNGGSSNSSSSCSDEANMGIEKGKREVEKRRRVTVIEDDNLNDEARNLSLKVGGNGSQIVERDAGSWEGTSGKKTKLAGGNSNRAVCQVEDCGADLSNAKDYHRRHKVCETHSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKINPDNVVNGNSPPDEQTTNGSNQTTDQDLLSHLIRSLACQSSEHGRKNLSGILHEPQNLLNNGSLSGKSDLVSTFLSNGPQVPLRSSKQHDTPIPETPAQAIGRGGDTPAISSIKPSTSNSPPAYSEIRDSTVGQCKMMNFDLNDAYVDSDDGMEDIERQTLPVHMGTSSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSAGEAQSRTDRIILKLFGKAPNDFPHVLRAQVLDWLSHSPTEIESYIRPGCVILTIYLRQTEAAWDNLCHDLSTSFNRLLDVSDDAFWKTGWVYVRVVVDTSLPLRNNNYCRITSVNPVAVSTSKKAIFSVKGINLSQPTTRLLCAIEGKYLTQEASDESTESDDNLKAQDDSLCVTFSCSIPVVYGRGFIEVEDDGFSSSSFPFIVAEEDVCSEICSLQSALELTETCSNSGETAELEGRSNAMEFIHEIGWLFHRNQLKSRLGHLDPNENLFSLPRFKWLMEFSMDHDWCAVVKKLLDILQDGTVDAGGHPSLNLALMEMGLLHRAVRKNSRSLVELLLRYPSKVNDASSSEDSASVDGETDSFLFRPNVVGPAGLTPLHIAAGKDDSEDVLDALTNDPGMVGIEAWKSARDSTGSTPEDYARLRGHYSYIRLVQRKINKRSAAGHVVLDIPSSLSDGSWNQKQNTDFTSSRFEIGRTELKPSQQHCKLCVRKPLGCGTSSSASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLDYGTS 985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14261325 14274254 + MELO3C012909.2.1 Cme04g01038 325299

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01038 985 MobiDBLite consensus disorder prediction 233 254 - -
Cme04g01038 985 Gene3D - 726 881 IPR036770 -
Cme04g01038 985 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 984 IPR044817 GO:0003677
Cme04g01038 985 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677
Cme04g01038 985 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 17 984 - -
Cme04g01038 985 MobiDBLite consensus disorder prediction 309 357 - -
Cme04g01038 985 SUPERFAMILY SBT domain 154 235 IPR036893 GO:0003677|GO:0005634
Cme04g01038 985 MobiDBLite consensus disorder prediction 340 357 - -
Cme04g01038 985 SUPERFAMILY Ankyrin repeat 753 867 IPR036770 -
Cme04g01038 985 MobiDBLite consensus disorder prediction 220 254 - -
Cme04g01038 985 Pfam SBP domain 156 229 IPR004333 GO:0003677
Cme04g01038 985 MobiDBLite consensus disorder prediction 403 438 - -
Cme04g01038 985 Gene3D - 147 217 IPR036893 GO:0003677|GO:0005634
Cme04g01038 985 MobiDBLite consensus disorder prediction 309 323 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01038 - - - csv:101203103 1883.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01038 Cme-Chr4:14261325 Cme07g00013 Cme-Chr7:129531 1.53E-35 dispersed
Cme06g00679 Cme-Chr6:4375358 Cme04g01038 Cme-Chr4:14261325 1.24E-22 dispersed
Cme04g01038 Cme-Chr4:14261325 Cme02g01810 Cme-Chr2:24881083 1.76E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g481 Blo05g00368 . . . . Bpe06g00463 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g01038
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme04g01038 . 181 985 SBP-box Gene Family AT2G47070 53.2 1.3e-223 773.1
Cme04g01038 . 25 985 SBP-box Gene Family AT3G60030 53.1 6.4e-260 894.0
Cme12g01579 . 56 191 SBP-box Gene Family AT5G50570 66.4 5.3e-45 178.7
Cme11g02326 . 15 163 SBP-box Gene Family AT5G50570 55.9 1.3e-40 164.1
Cme12g01922 . 121 279 SBP-box Gene Family AT1G69170 54.1 2.3e-41 166.8
Cme04g01038 . 181 985 SBP-box Gene Family AT2G47070 53.2 1.3e-223 773.1
Cme12g01922 . 121 279 SBP-box Gene Family AT1G69170 54.1 2.3e-41 166.8
Cme04g01038 . 25 985 SBP-box Gene Family AT3G60030 53.1 6.4e-260 894.0
Cme12g01579 . 56 191 SBP-box Gene Family AT5G50570 66.4 5.3e-45 178.7
Cme11g02326 . 15 163 SBP-box Gene Family AT5G50570 55.9 1.3e-40 164.1
Cme12g01579 . 56 191 SBP-box Gene Family AT5G50670 66.4 5.3e-45 178.7
Cme11g02326 . 15 163 SBP-box Gene Family AT5G50670 55.9 1.3e-40 164.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003053 3 3 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 0 1 2 1 2 2 2 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41181 PF03110 SBP 7.20E-30 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g01038 Cme_Chr04 FPKM 0.0 0.0 0.0 0.701087 0.0 0.0 0.0 2.781652 1.852028 2.223196