Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01097 ATGGATTTCTGGCCGGAATTTCTCGCCAGCAGTTGGGGTAAAGAGTTCGTCGCCGGTGGAATCGGCGGTGTTGCCGGCATCGTCTCCGGTTACCCACTCGACACTCTTCGTATCCGCCAACAGCACTCCACCTCCGGCTCCGCCATCACCGTCCTCCGTAACATCATGTCCAACGGCGGCCCCGCCGCTCTCTACAGAGGAATGGGAGCTCCACTCGCTTCCGTCACTTTCCAGAACGCCATTGTTTTTCAAACCAACGCCGTACTCTGCAGAGCGTTCGATCCATCGGCGACGGACAAACGTCCACCGTCGTACAAGGCGGTAGCATTGGGCGGATTCGGCACCGGAGCATTACAGAGCTTAATTTTAACACCGGTTGAGCTGGTGAAAATCCGTCTTCAATTACAGGATTTGGGTTCATCAAATCACGTAGATCTGAATTCATCTCGACACGGGCCGATGCAGGTTGCGAAGAACATTTTCAAAACCGAAGGCTACAAAGGGCTGTACAGAGGGTTAACAATCACAATGCTAAGAGACGCTCCATCCCATTGTTTTTACTTTTGGACATACGAATTCATGAGAGAAAAGCTTCATCCCGGTTGCCGGGAAACAGGGCAAGAGACATTGAGAACGATGTTAGTCGCCGGAGGACTGGCCGGCGTTGCGAGTTGGGTTTGTTGTTACCCATTAGATGTGATTAAAACTAGACTTCAAGCTCAATCGAAATTCAAGTTTCAAAAGTACAGTGGGATTGTAGATTGTTTCTATAAGAGTGTGAAAGAAGAAGGGTATAGTGTTTTATGGCGTGGATTAGGAACCGCAATAGCTAGAGCTTTTGTGGTGAATGGAGCCATTTTTTCAGCTTATGAACTTAGTTTGAGGTGTTTGGCCAACAATGGAGGATTTCATGCTGAAAATACCATTTGA 930 48.6 MDFWPEFLASSWGKEFVAGGIGGVAGIVSGYPLDTLRIRQQHSTSGSAITVLRNIMSNGGPAALYRGMGAPLASVTFQNAIVFQTNAVLCRAFDPSATDKRPPSYKAVALGGFGTGALQSLILTPVELVKIRLQLQDLGSSNHVDLNSSRHGPMQVAKNIFKTEGYKGLYRGLTITMLRDAPSHCFYFWTYEFMREKLHPGCRETGQETLRTMLVAGGLAGVASWVCCYPLDVIKTRLQAQSKFKFQKYSGIVDCFYKSVKEEGYSVLWRGLGTAIARAFVVNGAIFSAYELSLRCLANNGGFHAENTI 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14974455 14976808 + MELO3C012965.2.1 Cme04g01097 325358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01097 309 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Cme04g01097 309 PRINTS Mitochondrial carrier protein signature 118 136 IPR002067 GO:0055085
Cme04g01097 309 PRINTS Mitochondrial carrier protein signature 170 188 IPR002067 GO:0055085
Cme04g01097 309 PRINTS Mitochondrial carrier protein signature 217 239 IPR002067 GO:0055085
Cme04g01097 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 197 IPR018108 -
Cme04g01097 309 PANTHER CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN 1 298 - -
Cme04g01097 309 Gene3D Mitochondrial carrier domain 9 304 IPR023395 -
Cme04g01097 309 SUPERFAMILY Mitochondrial carrier 11 291 IPR023395 -
Cme04g01097 309 Pfam Mitochondrial carrier protein 109 198 IPR018108 -
Cme04g01097 309 Pfam Mitochondrial carrier protein 212 299 IPR018108 -
Cme04g01097 309 Pfam Mitochondrial carrier protein 11 92 IPR018108 -
Cme04g01097 309 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 1 298 - -
Cme04g01097 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 208 296 IPR018108 -
Cme04g01097 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 92 IPR018108 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme01g02686 Cme04g01097 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01097 Cme-Chr4:14974455 Cme06g02477 Cme-Chr6:31733791 5.65E-51 dispersed
Cme01g02686 Cme-Chr1:34282036 Cme04g01097 Cme-Chr4:14974455 4.04E-151 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01097 K15109 - csv:101222749 608.216