Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme04g01106 | ATGGAGGAAGTGGACGACGGGAGCGCGGGTGGAGCAGCGAGGAGAGATAATAATAATAATCATCATGATACGATGACAGCGGAAGTTAGTAGTGAGAATTCGGGAGCGGTAGTGAGGTCTAGATCGGAGGAGGAAGAGGAGGAAGAGGAGGAGGGAGGAGGGCAGGATGATCAGGAGAATGAATTAGTAGATCATGGGTGTCATGTAAAGAGAAGGAAGAAATATCATCGCCATACCACCGAGCAGATCAGAGAAATGGAGGCGTTGTTTAAAGAGTCGCCACATCCAGATGAGAAACAAAGGCAGCAACTTAGCAAGCGATTAGGACTTTCACCAAGGCAGGTCAAGTTTTGGTTTCAAAATCGTCGAACCCAAATCAAAGCTATTCAAGAGCGGCATGAAAACACATTGTTAAAAGCTGAAATGGAGAAACTTCGAGAAGAAAATAAAGCCATGAGAGAAATTTCTAAGAAAAAAATTGGTTGTCCCAATTGCGGAACTGCAGACGCTACCCAAGACGACATCGTTTTCACAACTACCGAGCAATTACGTATCAAGAATGCCAAGCTCAAAGCCGAGGTCGAGAAACTACGAGCAGCGCTGGGAAAATACCCACAAGCGGCAGCGTCTCCATCGACATACTCGTCTGGGAACGAGCAAGAGACGACGAACAGAAGCTGCTTAGATTTTTACACGGGAATTTTTGGGCTTGAAAAGTCAAGAATCATGGAGAAAGTTGATGAAGCTGTTGAAGAGCTGAAAACAATGGCTGGAGCCGGCGACCCACTTTGGGTCCGGAGCGTGGAGACGGGAAGAGAGATTTTAAACTACGATGAGTATTTGAAAACCTTTAGATTCAATAATAATAATTCAAACACACGTAATTGCCTCAAAACGCACATTGAGGCCTCGAGAGAGACGGCTCTTGTTTTCATGGAGCCATCTAGGTTGGTTCAAAGCTTCATGGATGAGAATCAATGGAAGGAAATGTTTCCTTTTATGATATCAAAGGCAGCTACAGTTGATGTTATTTGTAATGGAGAAGCTGCCAATTGGAACAATGGAGCAGTGCAATTGATGTTTGCGGAAGTGCAAATGCTTACACCGTTAGTCCCCACAAGAGAAATGTATTTCATTCGCCATTGCAAGCAGCTCGATGCAGAACAGTGGGCAATCGTTGATGTTTCAATCGAAAACGTTGAAGATAACAATATCGATGCATCGTTAGTAAAATATAGAAAACGTCCATCTGGTTGCATCATTAAGGACGAATCTAATGGCCATTGCAAGGTAACAATGGTGGAACATTTGGAATGTGAAAAAAAACAAAGTTCACAACTTGTACAGAAGCATAGTGAACAGTGGCACAGCCTTTGGGGCAAGACATTGGATGGCAACTCTCCAACTCCAATGTGA | 1416 | 43.86 | MEEVDDGSAGGAARRDNNNNHHDTMTAEVSSENSGAVVRSRSEEEEEEEEEGGGQDDQENELVDHGCHVKRRKKYHRHTTEQIREMEALFKESPHPDEKQRQQLSKRLGLSPRQVKFWFQNRRTQIKAIQERHENTLLKAEMEKLREENKAMREISKKKIGCPNCGTADATQDDIVFTTTEQLRIKNAKLKAEVEKLRAALGKYPQAAASPSTYSSGNEQETTNRSCLDFYTGIFGLEKSRIMEKVDEAVEELKTMAGAGDPLWVRSVETGREILNYDEYLKTFRFNNNNSNTRNCLKTHIEASRETALVFMEPSRLVQSFMDENQWKEMFPFMISKAATVDVICNGEAANWNNGAVQLMFAEVQMLTPLVPTREMYFIRHCKQLDAEQWAIVDVSIENVEDNNIDASLVKYRKRPSGCIIKDESNGHCKVTMVEHLECEKKQSSQLVQKHSEQWHSLWGKTLDGNSPTPM | 471 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 15056994 | 15063018 | - | MELO3C012973.2.1 | Cme04g01106 | 325367 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme04g01106 | 471 | ProSiteProfiles | START domain profile. | 235 | 448 | IPR002913 | GO:0008289 | |
Cme04g01106 | 471 | MobiDBLite | consensus disorder prediction | 1 | 79 | - | - | |
Cme04g01106 | 471 | Coils | Coil | 434 | 454 | - | - | |
Cme04g01106 | 471 | SMART | START_1 | 243 | 469 | IPR002913 | GO:0008289 | |
Cme04g01106 | 471 | Pfam | Homeodomain | 72 | 127 | IPR001356 | GO:0003677 | |
Cme04g01106 | 471 | Pfam | START domain | 247 | 453 | IPR002913 | GO:0008289 | |
Cme04g01106 | 471 | ProSitePatterns | 'Homeobox' domain signature. | 104 | 127 | IPR017970 | GO:0000981|GO:0006355 | |
Cme04g01106 | 471 | SUPERFAMILY | Homeodomain-like | 62 | 130 | IPR009057 | - | |
Cme04g01106 | 471 | PRINTS | Lambda-repressor HTH signature | 100 | 109 | IPR000047 | GO:0003677 | |
Cme04g01106 | 471 | PRINTS | Lambda-repressor HTH signature | 109 | 125 | IPR000047 | GO:0003677 | |
Cme04g01106 | 471 | SUPERFAMILY | Bet v1-like | 237 | 440 | - | - | |
Cme04g01106 | 471 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 | 21 | 448 | IPR042160 | - | |
Cme04g01106 | 471 | Gene3D | - | 245 | 457 | IPR023393 | - | |
Cme04g01106 | 471 | CDD | START_ArGLABRA2_like | 239 | 447 | - | - | |
Cme04g01106 | 471 | MobiDBLite | consensus disorder prediction | 23 | 37 | - | - | |
Cme04g01106 | 471 | Coils | Coil | 128 | 158 | - | - | |
Cme04g01106 | 471 | Coils | Coil | 180 | 200 | - | - | |
Cme04g01106 | 471 | MobiDBLite | consensus disorder prediction | 43 | 57 | - | - | |
Cme04g01106 | 471 | SMART | HOX_1 | 71 | 133 | IPR001356 | GO:0003677 | |
Cme04g01106 | 471 | Gene3D | - | 59 | 145 | - | - | |
Cme04g01106 | 471 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 | 21 | 448 | - | - | |
Cme04g01106 | 471 | ProSiteProfiles | 'Homeobox' domain profile. | 69 | 129 | IPR001356 | GO:0003677 | |
Cme04g01106 | 471 | CDD | homeodomain | 72 | 127 | IPR001356 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme04g01106 | Cme-Chr4:15056994 | Cme11g02549 | Cme-Chr11:31886646 | 5.80E-99 | dispersed | |
Cme01g02704 | Cme-Chr1:34346522 | Cme04g01106 | Cme-Chr4:15056994 | 6.66E-134 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41186 | PF01852 | START | 6.80E-44 | CL0209 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme04g01106 | K09338 | - | csv:101221341 | 796.578 |