Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01106 ATGGAGGAAGTGGACGACGGGAGCGCGGGTGGAGCAGCGAGGAGAGATAATAATAATAATCATCATGATACGATGACAGCGGAAGTTAGTAGTGAGAATTCGGGAGCGGTAGTGAGGTCTAGATCGGAGGAGGAAGAGGAGGAAGAGGAGGAGGGAGGAGGGCAGGATGATCAGGAGAATGAATTAGTAGATCATGGGTGTCATGTAAAGAGAAGGAAGAAATATCATCGCCATACCACCGAGCAGATCAGAGAAATGGAGGCGTTGTTTAAAGAGTCGCCACATCCAGATGAGAAACAAAGGCAGCAACTTAGCAAGCGATTAGGACTTTCACCAAGGCAGGTCAAGTTTTGGTTTCAAAATCGTCGAACCCAAATCAAAGCTATTCAAGAGCGGCATGAAAACACATTGTTAAAAGCTGAAATGGAGAAACTTCGAGAAGAAAATAAAGCCATGAGAGAAATTTCTAAGAAAAAAATTGGTTGTCCCAATTGCGGAACTGCAGACGCTACCCAAGACGACATCGTTTTCACAACTACCGAGCAATTACGTATCAAGAATGCCAAGCTCAAAGCCGAGGTCGAGAAACTACGAGCAGCGCTGGGAAAATACCCACAAGCGGCAGCGTCTCCATCGACATACTCGTCTGGGAACGAGCAAGAGACGACGAACAGAAGCTGCTTAGATTTTTACACGGGAATTTTTGGGCTTGAAAAGTCAAGAATCATGGAGAAAGTTGATGAAGCTGTTGAAGAGCTGAAAACAATGGCTGGAGCCGGCGACCCACTTTGGGTCCGGAGCGTGGAGACGGGAAGAGAGATTTTAAACTACGATGAGTATTTGAAAACCTTTAGATTCAATAATAATAATTCAAACACACGTAATTGCCTCAAAACGCACATTGAGGCCTCGAGAGAGACGGCTCTTGTTTTCATGGAGCCATCTAGGTTGGTTCAAAGCTTCATGGATGAGAATCAATGGAAGGAAATGTTTCCTTTTATGATATCAAAGGCAGCTACAGTTGATGTTATTTGTAATGGAGAAGCTGCCAATTGGAACAATGGAGCAGTGCAATTGATGTTTGCGGAAGTGCAAATGCTTACACCGTTAGTCCCCACAAGAGAAATGTATTTCATTCGCCATTGCAAGCAGCTCGATGCAGAACAGTGGGCAATCGTTGATGTTTCAATCGAAAACGTTGAAGATAACAATATCGATGCATCGTTAGTAAAATATAGAAAACGTCCATCTGGTTGCATCATTAAGGACGAATCTAATGGCCATTGCAAGGTAACAATGGTGGAACATTTGGAATGTGAAAAAAAACAAAGTTCACAACTTGTACAGAAGCATAGTGAACAGTGGCACAGCCTTTGGGGCAAGACATTGGATGGCAACTCTCCAACTCCAATGTGA 1416 43.86 MEEVDDGSAGGAARRDNNNNHHDTMTAEVSSENSGAVVRSRSEEEEEEEEEGGGQDDQENELVDHGCHVKRRKKYHRHTTEQIREMEALFKESPHPDEKQRQQLSKRLGLSPRQVKFWFQNRRTQIKAIQERHENTLLKAEMEKLREENKAMREISKKKIGCPNCGTADATQDDIVFTTTEQLRIKNAKLKAEVEKLRAALGKYPQAAASPSTYSSGNEQETTNRSCLDFYTGIFGLEKSRIMEKVDEAVEELKTMAGAGDPLWVRSVETGREILNYDEYLKTFRFNNNNSNTRNCLKTHIEASRETALVFMEPSRLVQSFMDENQWKEMFPFMISKAATVDVICNGEAANWNNGAVQLMFAEVQMLTPLVPTREMYFIRHCKQLDAEQWAIVDVSIENVEDNNIDASLVKYRKRPSGCIIKDESNGHCKVTMVEHLECEKKQSSQLVQKHSEQWHSLWGKTLDGNSPTPM 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15056994 15063018 - MELO3C012973.2.1 Cme04g01106 325367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01106 471 ProSiteProfiles START domain profile. 235 448 IPR002913 GO:0008289
Cme04g01106 471 MobiDBLite consensus disorder prediction 1 79 - -
Cme04g01106 471 Coils Coil 434 454 - -
Cme04g01106 471 SMART START_1 243 469 IPR002913 GO:0008289
Cme04g01106 471 Pfam Homeodomain 72 127 IPR001356 GO:0003677
Cme04g01106 471 Pfam START domain 247 453 IPR002913 GO:0008289
Cme04g01106 471 ProSitePatterns 'Homeobox' domain signature. 104 127 IPR017970 GO:0000981|GO:0006355
Cme04g01106 471 SUPERFAMILY Homeodomain-like 62 130 IPR009057 -
Cme04g01106 471 PRINTS Lambda-repressor HTH signature 100 109 IPR000047 GO:0003677
Cme04g01106 471 PRINTS Lambda-repressor HTH signature 109 125 IPR000047 GO:0003677
Cme04g01106 471 SUPERFAMILY Bet v1-like 237 440 - -
Cme04g01106 471 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 21 448 IPR042160 -
Cme04g01106 471 Gene3D - 245 457 IPR023393 -
Cme04g01106 471 CDD START_ArGLABRA2_like 239 447 - -
Cme04g01106 471 MobiDBLite consensus disorder prediction 23 37 - -
Cme04g01106 471 Coils Coil 128 158 - -
Cme04g01106 471 Coils Coil 180 200 - -
Cme04g01106 471 MobiDBLite consensus disorder prediction 43 57 - -
Cme04g01106 471 SMART HOX_1 71 133 IPR001356 GO:0003677
Cme04g01106 471 Gene3D - 59 145 - -
Cme04g01106 471 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 21 448 - -
Cme04g01106 471 ProSiteProfiles 'Homeobox' domain profile. 69 129 IPR001356 GO:0003677
Cme04g01106 471 CDD homeodomain 72 127 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01106 Cme-Chr4:15056994 Cme11g02549 Cme-Chr11:31886646 5.80E-99 dispersed
Cme01g02704 Cme-Chr1:34346522 Cme04g01106 Cme-Chr4:15056994 6.66E-134 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41186 PF01852 START 6.80E-44 CL0209 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01106 K09338 - csv:101221341 796.578