Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01127 ATGGCGGAATCCAACAATTGGAATTCAGAATCTGAAAGTAGAGAAATGAAAAGGGGAAAACAGAGGGATCAAGAACAGAGAGATCAGAAACATCCAATTTACAGAGGCGTACGAAGAAGGAGTTGGGGTAAATGGGTGTCGGAGATCCGGCAACCGAGGAAGAAATCTCGGATATGGCTGGGGACTTTCACGACGGCGGAGATGGCGGCACGTGCACACGACGTGGCGGCGCTCAGTATCAAAGGTGATTCCGCCAGGGCCATTCTCAATTTCCCTCAACTCGCCGGTTTGCTTCCCCGACCGGTGTCGTTAATGCCGAGGGATATTCAAGAGGCGGCTGCCAAGGCGGCGGCGATGGTGGATTTTGATTCCGAGACGGTGTCGTTTTCGAATGGTGAAGAAGGGTCAGATGAACTGGGGGAAATCGTGGAATTGCCCAATATTGAAGAGGATATAAGAGCCGAGTCGTGGAACGAGTTCGAGTTCATTGACTCGGTTGATTGGTGGGGAAATCCGCCGTTTACGGCAGCGGAAATGGATTTCTGTGCGGTGTTTTCAGATCAGAGTACGGCTCCAGTCACCTTTGACCGCGGAGATTGGGAATGA 606 51.65 MAESNNWNSESESREMKRGKQRDQEQRDQKHPIYRGVRRRSWGKWVSEIRQPRKKSRIWLGTFTTAEMAARAHDVAALSIKGDSARAILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAMVDFDSETVSFSNGEEGSDELGEIVELPNIEEDIRAESWNEFEFIDSVDWWGNPPFTAAEMDFCAVFSDQSTAPVTFDRGDWE 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15385984 15386633 - MELO3C012994.2.1 Cme04g01127 325388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01127 201 MobiDBLite consensus disorder prediction 1 35 - -
Cme04g01127 201 SMART rav1_2 33 98 IPR001471 GO:0003700|GO:0006355
Cme04g01127 201 MobiDBLite consensus disorder prediction 10 32 - -
Cme04g01127 201 Pfam AP2 domain 32 82 IPR001471 GO:0003700|GO:0006355
Cme04g01127 201 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 179 - -
Cme04g01127 201 SUPERFAMILY DNA-binding domain 33 93 IPR016177 GO:0003677
Cme04g01127 201 CDD AP2 32 92 IPR001471 GO:0003700|GO:0006355
Cme04g01127 201 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Cme04g01127 201 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Cme04g01127 201 ProSiteProfiles AP2/ERF domain profile. 33 92 IPR001471 GO:0003700|GO:0006355
Cme04g01127 201 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 179 - -
Cme04g01127 201 Gene3D AP2/ERF domain 33 93 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01127 Cme-Chr4:15385984 Cme06g02554 Cme-Chr6:32548713 1.04E-37 dispersed
Cme06g00043 Cme-Chr6:308992 Cme04g01127 Cme-Chr4:15385984 5.08E-41 transposed
Cme01g02722 Cme-Chr1:34431575 Cme04g01127 Cme-Chr4:15385984 2.88E-59 wgd
Cme04g01127 Cme-Chr4:15385984 Cme05g01995 Cme-Chr5:28458946 1.78E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41188 PF00847 AP2 9.20E-14 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01127 K09286 - csv:101222354 395.586