Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01142 ATGTTTTGGTCAATGAATCCTGTACGAATTCCTACTTTGTTCTTCCTTCTATACTTTGCTGTTCTTCTTCAAGATCATTCCCTCTGTTCTTCTTACCCCACGCCCTTGAATTGTACGGACACAACTCGTTTATGCACTTCGTTTTTGGCCTTTAAGGCTCAGCCAAATCAGACCCTTTCTGTGATCCAGAGTATGTTCGACGTATTGCCTGAAGATGTAACCGTTGAAGGGAATGGTCAGGACTATGTGTTCATCAGGAAGAACTGCTCCTGTGCCTCTGGGTTGAAGAAATACATAACCAACACCACTTTTACTATCAAATCCAATCACGGCCGTGTATATGACATAGTCATGGAAGCGTATGATGGGCTTGCGTTGTTACCCAACACAACTCGAATGGCAAGGAACGGCGCTGTTGTGTCTTTGAGATTGTTTTGTGCTTGTTCAAGCGGGTTGTGGAACTATTTGATGAGCTATGTGATGAGAGATGGTGATACCATAGAGTCTTTGGCTAGCCGATTTGGGGTTAGTATGGATAGCATTGAGTCGGTGAATGGAATTGAAAATCCCGGTAATGTTACTGTGGGCGCTTTGTATTACATTCCCTTGAATTCGGTTCCTGGAGATCCTTATCCGTTGAAAACAGACATTTCTCCTGCTCCTACTCCAGCTCCTTCTTATACTCTGAGCAATTTCTCAGATAATGCTGAGAGCCCCAAACGTCATCCTCCATATATATGGATCGTTGGAAGTTTGGGAATTATTCTTGTTCTGATTTTGGTAGGCATAGTAGGTTATGCTTGCTTCAGGTGGTTGAAATGCTTTTCTAGATCAAGGAGTAGCCACTCCAAAGATCCCAGTGGAAAGGTTTCCCACAAGTTCCATATTCTTGGGAAGTCAAGTTTCTGCTGTGCTTCAGGAAGGTATATTTGCTGCAGTTCTGCAGATTGGAAGCAAGCCAACAGGGAATCCAGCGACAACCAGAGTGCAATTCCAAAAGCTATTGAGAACAATGTATTTGATGTGGACAAACCTGTGGTTTTTTCATGCGAAGAAATTGTTTCCTCAACCGATACTTTCTCTGATTCAAGTCTACTTGGCCATGGAACTTATGGTTCAGTGTACTATGGCGTCCTGCGTGATCAGGAAGTTGCCATAAAAAGAATGACTGCAACAAAAACTAAAGAGTTTATGGCAGAGATGAAAGTCCTCTGCAAGGTTCATCATGCTAACCTGGTAGAATTGATTGGTTATGCCGCCAGTGAGGATGAGTTGTTTCTTATTTATGAATATGCTCAAAAAGGTCCCCTCAAAAGCCATTTACATGATCCTCTGAACAAGGGTCATACGCCACTATCTTGGATTATGAGACTCCAAATTGCTTTGGATGCTGCGAGGGGTCTTGAGTACATTCATGAGCATACTAAAACTCATTACGTCCATAGAGATATTAAGACGAGCAACATCTTACTTGATGGTTCTTTTAGAGCAAAGATTTCTGACTTTGGGTTGGCCAAGCTTGTTGGAAAAACAAATGAGGGTGAAGCTACAGTAACCAAAGTTGTTGGTACATACGGTTATTTGGCTCCCGAATATTTGAGTAATGGTCTTGCCACAACCAAAAGTGATGTGTATGCTTATGGTGTCGTTCTTTTTGAGCTTATAACTGGAAAGGAGGCAATTATACGAACTGAGGGGACAACTATGAAGAATCCTGAAAGACGGTCACTAGCATCTATTATGTTAACTGTTCTTCGGAATGCACCTGATCCCATGAATATGGCAAGTCTGAAAGATCAAGTTGATCCGAGTATGATGGATTTGTATCCTCATGACTGTCTATTTAAGGTGGCCATGTTGGCAAAGCAATGCGTAGATGAAGATTCAATTCTACGTCCCGACATGAAGCAAGTTGTGATATCCTTGTCACAAATCCTACTCTCTTCGATCGAGTGGGAAGCCACTCTAGCTGGTAACAGCCAAGTTTTTAGTGGTCTTGTCCAAGGAAGATAG 2013 42.32 MFWSMNPVRIPTLFFLLYFAVLLQDHSLCSSYPTPLNCTDTTRLCTSFLAFKAQPNQTLSVIQSMFDVLPEDVTVEGNGQDYVFIRKNCSCASGLKKYITNTTFTIKSNHGRVYDIVMEAYDGLALLPNTTRMARNGAVVSLRLFCACSSGLWNYLMSYVMRDGDTIESLASRFGVSMDSIESVNGIENPGNVTVGALYYIPLNSVPGDPYPLKTDISPAPTPAPSYTLSNFSDNAESPKRHPPYIWIVGSLGIILVLILVGIVGYACFRWLKCFSRSRSSHSKDPSGKVSHKFHILGKSSFCCASGRYICCSSADWKQANRESSDNQSAIPKAIENNVFDVDKPVVFSCEEIVSSTDTFSDSSLLGHGTYGSVYYGVLRDQEVAIKRMTATKTKEFMAEMKVLCKVHHANLVELIGYAASEDELFLIYEYAQKGPLKSHLHDPLNKGHTPLSWIMRLQIALDAARGLEYIHEHTKTHYVHRDIKTSNILLDGSFRAKISDFGLAKLVGKTNEGEATVTKVVGTYGYLAPEYLSNGLATTKSDVYAYGVVLFELITGKEAIIRTEGTTMKNPERRSLASIMLTVLRNAPDPMNMASLKDQVDPSMMDLYPHDCLFKVAMLAKQCVDEDSILRPDMKQVVISLSQILLSSIEWEATLAGNSQVFSGLVQGR 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15595215 15600627 - MELO3C013002.2.1 Cme04g01142 325403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01142 670 ProSiteProfiles Protein kinase domain profile. 360 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g01142 670 SUPERFAMILY LysM domain 157 202 IPR036779 -
Cme04g01142 670 PANTHER BNAA06G02020D PROTEIN 36 670 - -
Cme04g01142 670 Pfam LysM domain 159 196 IPR018392 -
Cme04g01142 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Cme04g01142 670 SUPERFAMILY Protein kinase-like (PK-like) 342 642 IPR011009 -
Cme04g01142 670 ProSiteProfiles LysM domain profile. 157 201 IPR018392 -
Cme04g01142 670 CDD LysM 158 201 IPR018392 -
Cme04g01142 670 Gene3D LysM domain 154 207 IPR036779 -
Cme04g01142 670 SMART serkin_6 360 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g01142 670 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 36 670 IPR044812 GO:0019199|GO:0045087
Cme04g01142 670 Pfam Protein tyrosine and serine/threonine kinase 364 640 IPR001245 GO:0004672|GO:0006468
Cme04g01142 670 SMART LysM_2 158 202 IPR018392 -
Cme04g01142 670 Gene3D Transferase(Phosphotransferase) domain 1 433 656 - -
Cme04g01142 670 Gene3D Phosphorylase Kinase; domain 1 332 431 - -
Cme04g01142 670 ProSitePatterns Protein kinases ATP-binding region signature. 366 387 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01142 Cme-Chr4:15595215 Cme10g00554 Cme-Chr10:3544303 3.64E-117 dispersed
Cme11g00301 Cme-Chr11:3234179 Cme04g01142 Cme-Chr4:15595215 7.52E-49 dispersed
Cme04g01142 Cme-Chr4:15595215 Cme04g02570 Cme-Chr4:31786326 3.23E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64806 PF07714 PK_Tyr_Ser-Thr 2.50E-48 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01142 - - csv:101213624 1278.85