Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01148 CTCAAACAACACTATTTATACCCCCCCTCTTCTTCTTCTTCTTCTTATTCTTCCAAGTCTGAGAACCAATCAACTCACAACCAAAACATACAAACGGAAATTACAGACTCTAACTTTTTTGTTCATTCATTAACTCGGTTCATATTGAAAATGTCTTGGCAATCTTACATTGACGATCAGTTGATGTATGAGGTTGATGGCCAACATCTCAAAGCCGCTGCTATAATCGGTAACGACGGTTCTGTTTGGGCTCAGAGCTCCGGTTTCCCTCAGTACAAGCCAGAAGAGATTTCTGCCATTATGAAGGATTTTGATGAGCCTGGATCTCTTGCCCCGACTGGGTTGCACCTAGGTGGATCAAAGTACATGGTTATTCAGGGAGAATCTGGAGCTGTTATCCGTGGAAAGAAGGGCACTTCTGGGATAACTGTAAAGAAAACAACCCAAGCACTGATTTTTGGTTTATATGATGAACCCATGACTCCAGGACAGTGCAACGTGATTGTTGAGAAGTTGGGAGATTACCTGATTGATCAAGGCCTCTAA 546 42.49 LKQHYLYPPSSSSSSYSSKSENQSTHNQNIQTEITDSNFFVHSLTRFILKMSWQSYIDDQLMYEVDGQHLKAAAIIGNDGSVWAQSSGFPQYKPEEISAIMKDFDEPGSLAPTGLHLGGSKYMVIQGESGAVIRGKKGTSGITVKKTTQALIFGLYDEPMTPGQCNVIVEKLGDYLIDQGL 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15693733 15696163 - MELO3C013007.2.1 Cme04g01148 325409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01148 181 Pfam Profilin 51 180 IPR005455 GO:0003779
Cme04g01148 181 CDD PROF 52 180 IPR005455 GO:0003779
Cme04g01148 181 SUPERFAMILY Profilin (actin-binding protein) 52 180 IPR036140 -
Cme04g01148 181 SMART prof_2 51 181 IPR005455 GO:0003779
Cme04g01148 181 PRINTS Profilin signature 71 80 IPR005455 GO:0003779
Cme04g01148 181 PRINTS Profilin signature 53 62 IPR005455 GO:0003779
Cme04g01148 181 PRINTS Profilin signature 114 128 IPR005455 GO:0003779
Cme04g01148 181 PRINTS Profilin signature 163 180 IPR005455 GO:0003779
Cme04g01148 181 PRINTS Profilin signature 150 163 IPR005455 GO:0003779
Cme04g01148 181 PRINTS Profilin signature 90 110 IPR005455 GO:0003779
Cme04g01148 181 PANTHER PROFILIN 51 181 - -
Cme04g01148 181 MobiDBLite consensus disorder prediction 1 28 - -
Cme04g01148 181 Gene3D Dynein light chain 2a, cytoplasmic 50 181 - -
Cme04g01148 181 PRINTS Plant profilin signature 51 64 IPR005455 GO:0003779
Cme04g01148 181 PRINTS Plant profilin signature 167 180 IPR005455 GO:0003779
Cme04g01148 181 PRINTS Plant profilin signature 121 130 IPR005455 GO:0003779
Cme04g01148 181 PRINTS Plant profilin signature 77 90 IPR005455 GO:0003779
Cme04g01148 181 PRINTS Plant profilin signature 154 167 IPR005455 GO:0003779
Cme04g01148 181 PRINTS Plant profilin signature 102 116 IPR005455 GO:0003779
Cme04g01148 181 PRINTS Plant profilin signature 134 149 IPR005455 GO:0003779
Cme04g01148 181 PANTHER PROFILIN 51 181 IPR005455 GO:0003779
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01148 Cme-Chr4:15693733 Cme05g02014 Cme-Chr5:28607837 4.96E-76 dispersed
Cme04g01148 Cme-Chr4:15693733 Cme05g02013 Cme-Chr5:28603802 1.39E-65 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01148 K05759 - csv:101218089 266.544