Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01160 ATGGCAGCTCTCCGATTCTTCCTCCTCATTCTTCTTTCCAGTTTCGCTCTCTTTCATTTCGTCTCTGCCCAGAATCCTTCAGGTTTCATCAGTTTAGATTGTGGGCTTCCGGCGAATTCCACATACACAGAGCCAAACACCGGAATAATCTACGAATCCGATGCGTCCTTCATTAATTCCGGTGAAATCCACAACGTTTCCGCTGATAACATAAACAGTGGCTTGAAACAGCCGTTGTGGAGTCTGAGGAGCTTTCCGGAAGGAATTAGGAATTGCTACAAATTGAAAGTGAGGAACGGGACGAAGTATTTGATTCGAGCTGTGTTTCGGTACGGAAATTACGATGGTAGAAGGAATCTGCCTGAATTTAATCTGTATTTTGGAGCGAACTTTTGGGACTCGGTTGCATTTAAAGGAGATTTCACAGTGAGGAAGGAGATTGTGCATATAGTTTCATCAAGTGATGTGCAAATCTGTGTTGTGAATAATGGAACTGGAACTCCGTTCATTTCTGCTTTGGAATTAAGGCCTCTGGAAGACACTGTATACGAGACTGGATCTTTGACAGTAGCTAGTTTCGTACGCCTTGACTACGGCACCCTTGATAATCAAACTATCAGGTATAAAGACGATGTCTACGATCGAATCTGGGATCCACCAGTTCCTATTCGAGGATGGACAACTATAAACACTTCGGAGAAAGTTTCCGTCGACGATCCACTCTTCTTCCAGCCGGCTCCGGCGGTTATGAACACAGCGGCGACACCGAGTAACGAAAGCGCTCCGATGGCGTTCTTTTGGCAGCCGCCGGATTTGACGACGGCGTTTTTCGTGTACATGTATTTTGCGGAGCTAAAGGTGCTTGGAGCGAATGAATCTAGAGAGTTCGACGTATTTCTGAACGGAAAACGGTGGCATAATGAATCGCTTTCTCCCAGGTATTTAAAGGAATTGGTGTTTTTCAGTACCGCGCCTCTGACCGGCGGGAACTACCAGATCTCCTTCGTTAGAACTCCCAATTCAACTCTTCCACCCATTCTCAATGCTCTTGAGGTTTATCGAGTTCTTAATTTCTCGCAATCAGAGACCAGTGGGGAAGATGTTGTCGCCATTGAAAACATCAAGGCGATTTATGGAGTTAAAAGAAACTGGCAAGGAGATCCCTGTGCCCCAAGGGAGTTCATTTGGCAAGGACTCAACTGTAGCTTTCTGAATTTTGAGCCTCCCAGAATCATATCCTTGAATTTATCCTCAAGTGGACTGACAGGGGAAATACCTCGAGAGATAGAAAATCTTAAAATGCTGGAGACTCTAGATCTATCAAACAATAGTTTGAGTGGACCAGTGCCTGATTTTCTCGCTCAATTGCCATTCTTGCGAGTGCTAATCTTGGAAAGAAACAAGCTTTCAGGACTAATTCCGGCCCAGCTCGTAGAGAAGTCCAATAATGGCTCTCTGACATTAAGATTTGGTGACAATCCAAATTTGTTTGCTACGGCTCCACGCAAAAGAAATATTGTTGTTCCTGTAGTAGCATCAGTTGTTGGATTTTTTCTGCTTTCGTTCTTAATTGCAGCGGCTATCTTTTGGAGGACAAAAAGAAGAAAATCAAAAGGAACTGAACTGGGAGACGTGAAACAAACTGTTGATATATCTCAAAATTGGGACACGACCAAGAGATGTTATTCATACTCGGATGTCCTAAGAATGACAAACAATTTCGAGCGTATGCTTGGAGAAGGTGGCTTTGGAAGAGTTTACTATGGGAAAATAGAGAACGCTGAAGTAGCTGTCAAAATGCTGTCTCCTCGATCAGTTCAAGGGTATCAACAATTTCAAGCAGAGGTTGAACTTCTTATGAGGGTTCACCATAGAAACCTGACTGGACTCGTTGGGTATTGCAATACGCCAGCCTACAAAGGACTTATCTACGAGTACATGGGCAGAGGGAACCTAGGATCTCTCATGTCAGATGGCAAGTCAGCTTTATTGAACTGGGTAGACAGACTTCATATAGCAGTTGATGCAGCACAAGGATTGCAATACTTGCATTCTGGTATAAAGCCAGCCATTGTACATAGAGATGTAAAATCTTCCAACATCTTGTTGGATGACAACTTTCGGGCAAAAGTATCTGATTTTGGCTTGTCGAGAATTTTTCCTGTCGACGATAGTGCCACTCATGTCACAACCAATGTCGTCGGCACTCCTGGTTACCTTGACCCTGAATACTACACATCTTATAGATTAAATGAAAAAAGCGACGTTTATGGCTTTGGAATTGTTCTTCTAGAAATTATAACTGGGAGACCAGTTTTGACAAAGACTCAAGACAATGTAACACATATCTATCAATGGGTCGATTCAATGGTTTCTCAAGGTGATATCAGTTCCATCATCGATCCAAAATTGAAAGAAGATTTCGAGGTGAACACCATTTGGAAAGCGGTTGAAATAGCAATGTCGTGTGCGTCTCCTGTGCCTACAAATAGGCCAACCATGAGCCAAGTTGTGATCGATTTGAATGAATGTTTGAAAATGGAGTTAGCTCAGAGCAACAACAATCATCAACCTGAATCCGTAGTTGAAGATCATGTTTCTCTGTTTCATCCAGAAGCAAGGTAG 2625 43.12 MAALRFFLLILLSSFALFHFVSAQNPSGFISLDCGLPANSTYTEPNTGIIYESDASFINSGEIHNVSADNINSGLKQPLWSLRSFPEGIRNCYKLKVRNGTKYLIRAVFRYGNYDGRRNLPEFNLYFGANFWDSVAFKGDFTVRKEIVHIVSSSDVQICVVNNGTGTPFISALELRPLEDTVYETGSLTVASFVRLDYGTLDNQTIRYKDDVYDRIWDPPVPIRGWTTINTSEKVSVDDPLFFQPAPAVMNTAATPSNESAPMAFFWQPPDLTTAFFVYMYFAELKVLGANESREFDVFLNGKRWHNESLSPRYLKELVFFSTAPLTGGNYQISFVRTPNSTLPPILNALEVYRVLNFSQSETSGEDVVAIENIKAIYGVKRNWQGDPCAPREFIWQGLNCSFLNFEPPRIISLNLSSSGLTGEIPREIENLKMLETLDLSNNSLSGPVPDFLAQLPFLRVLILERNKLSGLIPAQLVEKSNNGSLTLRFGDNPNLFATAPRKRNIVVPVVASVVGFFLLSFLIAAAIFWRTKRRKSKGTELGDVKQTVDISQNWDTTKRCYSYSDVLRMTNNFERMLGEGGFGRVYYGKIENAEVAVKMLSPRSVQGYQQFQAEVELLMRVHHRNLTGLVGYCNTPAYKGLIYEYMGRGNLGSLMSDGKSALLNWVDRLHIAVDAAQGLQYLHSGIKPAIVHRDVKSSNILLDDNFRAKVSDFGLSRIFPVDDSATHVTTNVVGTPGYLDPEYYTSYRLNEKSDVYGFGIVLLEIITGRPVLTKTQDNVTHIYQWVDSMVSQGDISSIIDPKLKEDFEVNTIWKAVEIAMSCASPVPTNRPTMSQVVIDLNECLKMELAQSNNNHQPESVVEDHVSLFHPEAR 874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15872393 15878780 + MELO3C013020.2.1 Cme04g01160 325421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01160 874 SUPERFAMILY Protein kinase-like (PK-like) 554 841 IPR011009 -
Cme04g01160 874 PANTHER PUTATIVE-RELATED 15 864 - -
Cme04g01160 874 SMART serkin_6 572 845 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g01160 874 Pfam Malectin-like domain 32 355 IPR024788 -
Cme04g01160 874 Pfam Protein tyrosine and serine/threonine kinase 574 840 IPR001245 GO:0004672|GO:0006468
Cme04g01160 874 ProSiteProfiles Protein kinase domain profile. 572 845 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g01160 874 SUPERFAMILY L domain-like 370 478 - -
Cme04g01160 874 ProSitePatterns Serine/Threonine protein kinases active-site signature. 691 703 IPR008271 GO:0004672|GO:0006468
Cme04g01160 874 ProSitePatterns Protein kinases ATP-binding region signature. 578 599 IPR017441 GO:0005524
Cme04g01160 874 Gene3D Phosphorylase Kinase; domain 1 554 646 - -
Cme04g01160 874 PANTHER OS07G0107800 PROTEIN-RELATED 15 864 - -
Cme04g01160 874 Gene3D Ribonuclease Inhibitor 370 488 IPR032675 -
Cme04g01160 874 Gene3D Transferase(Phosphotransferase) domain 1 647 867 - -
Cme04g01160 874 Pfam Leucine rich repeat 413 469 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01158 Cme-Chr4:15816096 Cme04g01160 Cme-Chr4:15872393 4.39E-25 dispersed
Cme04g01160 Cme-Chr4:15872393 Cme07g00682 Cme-Chr7:5855008 0 dispersed
Cme10g00619 Cme-Chr10:3947099 Cme04g01160 Cme-Chr4:15872393 2.03E-157 dispersed
Cme04g01159 Cme-Chr4:15829451 Cme04g01160 Cme-Chr4:15872393 0 tandem
Cme04g01160 Cme-Chr4:15872393 Cme04g01161 Cme-Chr4:15889458 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64808 PF12819 Malectin_like 2.20E-108 CL0202 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01160 - - csv:101215225 1675.6