Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme04g01192 | ATGAGTCGGGATCTGAAGCGAGGAAAGCAGGACAAAGGTTCTGATGATGTCCAGAAGGTGATTGTTGCAGTGAAGGCTTCCAAAGAAATTCCTAAAACTGCACTGGTTTGGGCGTTGACTCATGTTGTTCAAATTGGAGATTGCATAACTCTGTTGGTTGTTGTCCCTTCTCAAAGCTCTGGTAGAAAATTCTGGGGTTTTCCGAGATTTGCTGGGGATTGTGCAAGTGGTCACAAGAAAGCTCATTCTGGAACAAGCTCGGAGCTGAAATGTGATATTACTGATTCCTGTTCACAGATGATCCTTCAGCTTCATGATGTTTATGATCCAAATAAGATAAATGTGAAAATTAAAATTGTTTCGGGGTCACCAAGTGGGGCTGTAGCTGCTGAGGCCAAGAGAGCTCAAGCTAGCTGGGTTGTATTGGACAAACAGCTCAAACACGAGGAGAAATGTTGCATGGAAGAGTTACAGTGCAACATTGTGGTAATGAAACGATCACAACCAAAAGTTCTTCGTTTGAACCTGGTTGGGTCTCCAAAGAAGGAACCAGAAGTTCCCTCTCCGTCACCTTCTGATATAGATGAAGGGTCTGAAAGCCATCAAAAAGAAAATACTGATCCTCTAGATTTCATACGGGGACCAGTTGTGACTCCCAGTAGCAGTCCAGAATTGGGCACACCTTTTACCGCTACTGAAGCTGGAACATCATCAGTGTCAAGCTCAGATCCTGGAACTTCACCATTTTTCAACTCTGAAATGAATGGAGACACAAAGAAGGAGGAATTGTTTGTTATAAAGGAGAATAAAGAACTTGATGCTGCTAGTTCAGACTCAGATATTGAGAATTTATCTGTGTCGTCTGCAAGTTTAAGATTCCAACCATGGATGACAGAGTTTCTAAGTTCTCATCTTCAATCCTCACAACACATTAGTGGAAGATCACAGAGATGTGATGATAGGAATCAAGCGTCAACAAGAAATTCTTTTCTACTGAAGTCTTCTAAACATGACAGAGAATCAAGTATTGGAATGTCAAGCCATAGAAGTGACAATGATTTTCATGGGGACGTACGAGATGCAGTTTCATTATCCAGGAACACGCCACCAGGCCCTCCTCCATTATGTTCAATATGCCAACACAAGGCACCGGTTTTTGGAAAGCCTCCAAGGTGGTTCAGCTATGCTGAGCTGGAGCTTGCTACCGGTGGATTTTCACAAGCTAACTTTTTGGCTGAAGGAGGTTATGGATCTGTTCACAGAGGGGTACTCCCAGATGGACAGGTGGTCGCTGTCAAGCAGCACAAACTAGCTAGTTCTCAGGGAGACCTTGAATTTTGTTCAGAAGTCGAAGTTCTTAGCTGTGCACAGCATCGAAACGTTGTTATGTTGATTGGCTTTTGTATAGAGGAGAAGAGAAGGTTGTTGGTGTATGAATACATCTGCAATGGTTCATTGGATTCTCATTTATATGGACGCCAACAAGAGTCACTTGAATGGTCTGCACGGCAAAAAATTGCCGTGGGAGCTGCAAGGGGGTTACGATATCTCCACGAAGAATGTAGAGTTGGTTGCATTGTTCATCGAGATATGCGGCCAAACAACATTCTTATCACACATGATTTTGAACCACTAGTTGGAGATTTTGGCCTTGCAAGGTGGCAGCCTGACGGAGATACCGGTGTTGAAACAAGAGTTATCGGAACATTTGGGTATTTGGCTCCAGAATATGCTCAAAGTGGCCAAATCACAGAAAAAGCTGATGTTTATTCCTTCGGGGTGGTACTGGTGGAGCTAATTACTGGAAGAAAAGCCGTCGACCTTAGTCGGCCGAAAGGTCAACAGTGTCTCACTGAATGGGCGCGCCCCCTGCTGGATGAATTTCTCATTGATGAACTAATTGATCCAAGGCTAGGAAATAGCTTTGCAGAGCATGAAGTGTACTGTATGCTGCATGCTGCATCATTATGCATCCGAAGAGATCCCAACGCAAGGCCTCGTATGTCACAGGTTTTGCGGATTCTGGAAGGCGACCTCGTCATGGATGCTAATTACTTGTCCACTCCTGGATACGATGTGGGAAACCGGAGTGGTCGGATGTGGACTGAGCAACAGCAGCAGGCACAAAACTACAGTGGCTTGTTATCGGACGAGACTGTAGAAAGGTTCAATGAAAAGGTGTGTGTTGAAAGTTTAAGACCAGGTTACTGGGAAAGAGACAAGACAAGGAGGACTTCAAGTGGAAGTGCATTGTAA | 2256 | 44.33 | MSRDLKRGKQDKGSDDVQKVIVAVKASKEIPKTALVWALTHVVQIGDCITLLVVVPSQSSGRKFWGFPRFAGDCASGHKKAHSGTSSELKCDITDSCSQMILQLHDVYDPNKINVKIKIVSGSPSGAVAAEAKRAQASWVVLDKQLKHEEKCCMEELQCNIVVMKRSQPKVLRLNLVGSPKKEPEVPSPSPSDIDEGSESHQKENTDPLDFIRGPVVTPSSSPELGTPFTATEAGTSSVSSSDPGTSPFFNSEMNGDTKKEELFVIKENKELDAASSDSDIENLSVSSASLRFQPWMTEFLSSHLQSSQHISGRSQRCDDRNQASTRNSFLLKSSKHDRESSIGMSSHRSDNDFHGDVRDAVSLSRNTPPGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSQANFLAEGGYGSVHRGVLPDGQVVAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEEKRRLLVYEYICNGSLDSHLYGRQQESLEWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELITGRKAVDLSRPKGQQCLTEWARPLLDEFLIDELIDPRLGNSFAEHEVYCMLHAASLCIRRDPNARPRMSQVLRILEGDLVMDANYLSTPGYDVGNRSGRMWTEQQQQAQNYSGLLSDETVERFNEKVCVESLRPGYWERDKTRRTSSGSAL | 751 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 16312530 | 16318428 | + | MELO3C013046.2.1 | Cme04g01192 | 325453 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme04g01192 | 751 | MobiDBLite | consensus disorder prediction | 334 | 355 | - | - | |
Cme04g01192 | 751 | MobiDBLite | consensus disorder prediction | 175 | 255 | - | - | |
Cme04g01192 | 751 | Gene3D | HUPs | 5 | 151 | IPR014729 | - | |
Cme04g01192 | 751 | SUPERFAMILY | Protein kinase-like (PK-like) | 389 | 684 | IPR011009 | - | |
Cme04g01192 | 751 | Gene3D | Transferase(Phosphotransferase) domain 1 | 481 | 685 | - | - | |
Cme04g01192 | 751 | ProSiteProfiles | Protein kinase domain profile. | 405 | 686 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme04g01192 | 751 | PANTHER | OS01G0253100 PROTEIN | 15 | 710 | IPR045271 | GO:0004714|GO:0006468 | |
Cme04g01192 | 751 | Pfam | Protein tyrosine and serine/threonine kinase | 409 | 673 | IPR001245 | GO:0004672|GO:0006468 | |
Cme04g01192 | 751 | CDD | STKc_IRAK | 411 | 677 | - | - | |
Cme04g01192 | 751 | Gene3D | Phosphorylase Kinase; domain 1 | 377 | 480 | - | - | |
Cme04g01192 | 751 | CDD | USP_Like | 19 | 142 | - | - | |
Cme04g01192 | 751 | PANTHER | KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN | 15 | 710 | - | - | |
Cme04g01192 | 751 | ProSitePatterns | Tyrosine protein kinases specific active-site signature. | 526 | 538 | IPR008266 | GO:0004672|GO:0006468 | |
Cme04g01192 | 751 | MobiDBLite | consensus disorder prediction | 220 | 254 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme04g01192 | Cme-Chr4:16312530 | Cme10g00523 | Cme-Chr10:3371185 | 1.02E-97 | dispersed | |
Cme10g00750 | Cme-Chr10:4810408 | Cme04g01192 | Cme-Chr4:16312530 | 1.51E-06 | dispersed | |
Cme03g00434 | Cme-Chr3:6082409 | Cme04g01192 | Cme-Chr4:16312530 | 1.16E-109 | transposed | |
Cme03g00489 | Cme-Chr3:7136649 | Cme04g01192 | Cme-Chr4:16312530 | 1.41E-78 | transposed | |
Cme04g00634 | Cme-Chr4:6199318 | Cme04g01192 | Cme-Chr4:16312530 | 0 | transposed | |
Cme11g00380 | Cme-Chr11:3826598 | Cme04g01192 | Cme-Chr4:16312530 | 7.02E-78 | transposed | |
Cme09g01120 | Cme-Chr9:15884269 | Cme04g01192 | Cme-Chr4:16312530 | 1.28E-49 | transposed | |
Cme02g00224 | Cme-Chr2:1798667 | Cme04g01192 | Cme-Chr4:16312530 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64810 | PF07714 | PK_Tyr_Ser-Thr | 1.00E-40 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme04g01192 | - | - | csv:101206876 | 1468.37 |