Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01195 ATGGCAATGGAGGTAAAGCAAAAGTTCTTCCACGGAATGCTTGAGGTTACCGTCTTTCATGCAACGGCATACACGCCCCCTTCACCATTGGATTGCCTATTTGCTGGTGGCAAGCGTAGCTATGTGACAATTAAGATAGACAACAAGGAGGTTGCCCAGACAAGCCATGAACATGACCGTGTTTGGAACCAGACATTCCGAGTTCTATGTGCATATCCATTGACTTCTACCATCACCATTACATTGAAAACAGCTCGTTCTGTCTTGGGTAAATTCTATATCCAAGCCCAACAGATTTTGAAAGAAGCAAGTTTTATCAATGGCTTCTTTCCACTTCTTATGGAAAATGGGAAGCCAAGTCCGGAGCTCAAACTTCGATTCATGTTGTGGTTTAAACCAGCAGTATATGAATTAAGCTGGAAAAAGATGCTGGCAAATGGAGAATACAAGGGGCTGAGAAATGCAACATTTCCTTTAAGGTCCAACTGTCATGTGACACTATATCAAGATGCTCACCACCTCCCTACTTTTCAACCTCCATTTCATGGTTCAAGTACACCAAGAAGGCTATGGGAAGATGTATACAAGGCCATAGATAATGCAAAGCATTTGGTTTACATTGCAGGATGGTCCTTCAATCCAAAGATGGTGCTGGTAAGGGACTCTCAGACTGATATACCCTATGCTTTAGGAGTAAAGCTTGGAGAGTTGTTGAAGCAGAAGGCAGAGGAAGGAGTAGCTGTGAGAATACTGATTTGGGATGATGAAACATCTCTTCCCATCATCAAGAATGCCGGGATAATGAACACACATGATGAAGATGCTCGAGCATATTTCTTGCACTCAAAAGTCATATGTAGGTTGTGCCCCAAACTGCATCCTATGTCTCCACCAATTTTCTCTCATCATCAGAAAATCATAATCGTAGATGCTCAAACTCACATCAATGCACAAAACAGGGAGATTATGAGTTTCATTGGTGGTTTAGATCTTTGTGATGGTCGCTACGACACAGAACAACATTCATTGTTCCATACTTTGAACACAGAATCCCACTGTCGTGATTTCTACCAGACGAGTATATCAGGTGCCAAACTTCAAAAAGGAGGGCCAAGAGAGCCATGGCATGATGTTCACGCTTGTGTAACAGGTGAAGCTGCTTGGGATATATTAACAAACTTTGAGCAACGATGGACTAAGCAATCGGATGCTTCGTTGTTAGTACCGACGAGCATCTTATTAAAATTGATGCCCCAACTCGAATCAAACACAAACCCACAAAAGGATTGGAATGTGCAAGTTTTTCGATCAATTGACCATTTGTCTGCCAGTCAAATGTTCAGAAACATGACCATTGAACGAACCATCCACGAAGCTTATGTTGAAGCTATCAGGCGAGCCGAGAGATTTATTTACATCGAAAACCAATACTTTATTGGAGGGTGTCACTTTTGGGACAGAGATCGACACTGTGGATGCACAAATTTGATACCGATCGAGATTGCACTCAAGGTGGCTAATAAGATCAAGGCAAGGGAGAGGTTTGCAGTTTACATAGTGATTCCTATGTGGCCAGAAGGATCACCAGAGAGTGAATCGGTTGAGGATATGCTACATTGGACAAGGCAGACAATGACAATGATGTATAGACTGATTGGAGAAGCAATCCAAGAAACTGGGGAAAAGGCCCATCCAAGAGATTACTTAAATTTCTTTTGCCTTGCAAACAGAGAGGAAGAGAGAAAGTGGGACTTTATTCCCCCACACAGTCCCCAACATGCAACACAGTACTGGAATGCCCAACAACATCGGAGGTTCATGATCTACGTCCATTCCAAGGTCATGATAGTGGACGATTTGTACATTCTGATTGGATCCGCAAACGTAAACCAGAGGTCCATGGACGGAGAGCGAGATACAGAGATAGCAATCGGATGCTACCAAATAGAAAACGACGGAGAAGAGTTACCCAATGGAAGAGACATTTCAAGATTCCGGTTGTCGCTTTGGTACGAACATACACGAGGATTCGAAGAAGTGTTCTTAAACCCAGAAAGTTTGAAATGCGTTCAAAGGGTTCGTTCGATAGGAGATAAATCGTGGAAAATTTACAGTGGAGAAGAAGTTGAAGATATGAAAGGGGTTCATCTGGTAACGTACCCTGTGAAGGTGAAAGAAGATGGAACGATGGAGGATTTGGAAGAAAATGGAGGCCATTTTCCTGATACGAAATGCGCAATTAAAGGAAGAAGATCAATGATGTTGCCACCCATTTTCACAACCTAG 2286 42.65 MAMEVKQKFFHGMLEVTVFHATAYTPPSPLDCLFAGGKRSYVTIKIDNKEVAQTSHEHDRVWNQTFRVLCAYPLTSTITITLKTARSVLGKFYIQAQQILKEASFINGFFPLLMENGKPSPELKLRFMLWFKPAVYELSWKKMLANGEYKGLRNATFPLRSNCHVTLYQDAHHLPTFQPPFHGSSTPRRLWEDVYKAIDNAKHLVYIAGWSFNPKMVLVRDSQTDIPYALGVKLGELLKQKAEEGVAVRILIWDDETSLPIIKNAGIMNTHDEDARAYFLHSKVICRLCPKLHPMSPPIFSHHQKIIIVDAQTHINAQNREIMSFIGGLDLCDGRYDTEQHSLFHTLNTESHCRDFYQTSISGAKLQKGGPREPWHDVHACVTGEAAWDILTNFEQRWTKQSDASLLVPTSILLKLMPQLESNTNPQKDWNVQVFRSIDHLSASQMFRNMTIERTIHEAYVEAIRRAERFIYIENQYFIGGCHFWDRDRHCGCTNLIPIEIALKVANKIKARERFAVYIVIPMWPEGSPESESVEDMLHWTRQTMTMMYRLIGEAIQETGEKAHPRDYLNFFCLANREEERKWDFIPPHSPQHATQYWNAQQHRRFMIYVHSKVMIVDDLYILIGSANVNQRSMDGERDTEIAIGCYQIENDGEELPNGRDISRFRLSLWYEHTRGFEEVFLNPESLKCVQRVRSIGDKSWKIYSGEEVEDMKGVHLVTYPVKVKEDGTMEDLEENGGHFPDTKCAIKGRRSMMLPPIFTT 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16327414 16330374 + MELO3C013048.2.1 Cme04g01195 325456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01195 761 SMART pld_4 606 633 IPR001736 GO:0003824
Cme04g01195 761 SMART pld_4 300 335 IPR001736 GO:0003824
Cme04g01195 761 Gene3D Endonuclease Chain A 173 432 - -
Cme04g01195 761 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 606 633 IPR001736 GO:0003824
Cme04g01195 761 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 298 335 IPR001736 GO:0003824
Cme04g01195 761 SUPERFAMILY Phospholipase D/nuclease 141 409 - -
Cme04g01195 761 PIRSF PLD_plant 2 761 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Cme04g01195 761 Gene3D Endonuclease Chain A 447 652 - -
Cme04g01195 761 PANTHER PHOSPHOLIPASE D 7 761 IPR015679 -
Cme04g01195 761 SUPERFAMILY Phospholipase D/nuclease 425 690 - -
Cme04g01195 761 Pfam Phospholipase D C terminal 678 750 IPR024632 -
Cme04g01195 761 Gene3D C2 domain 2 131 IPR035892 -
Cme04g01195 761 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 129 IPR035892 -
Cme04g01195 761 Pfam Phospholipase D Active site motif 300 335 IPR001736 GO:0003824
Cme04g01195 761 Pfam Phospholipase D Active site motif 607 633 IPR001736 GO:0003824
Cme04g01195 761 Pfam C2 domain 13 111 IPR000008 -
Cme04g01195 761 PANTHER PHOSPHOLIPASE D ALPHA 4 7 761 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01195 Cme-Chr4:16327414 Cme07g02065 Cme-Chr7:25517572 0 dispersed
Cme04g01195 Cme-Chr4:16327414 Cme03g01617 Cme-Chr3:25062581 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01195 K01115 - csv:101206396 1547.33