Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme04g01226 | ATGGCTGGTTTGGCTCCTGAAGGTTCTCAATTTGATGCACGTCAGTATGACACAAAAATGAATGAATTACTTTCAGCTGATGGACAAGATTTCTTCACTTCATACGATGAAGTTTATGACAGTTTTGATTCTATGGGCCTGCAAGAAAACCTTCTCAGAGGAATCTATGCCTATGGTTTTGAGAAGCCATCTGCAATTCAACAAAGGGGAATTGTTCCTTTTTGCAAAGGGCTTGATGTGATCCAACAAGCCCAGTCTGGAACCGGGAAGACTGCAACTTTTTGCTCTGGCATTTTGCAGCAACTTGATTATGGTCTTGTGCAGTGCCAGGCTTTGGTCTTGGCACCCACTAGGGAACTTGCACAACAGATTGAGAAGGTTATGCGAGCCCTTGGTGATTATCTTGGTGTCAAGGTTCATGCTTGTGTTGGTGGGACGAGTGTACGTGAAGACCAACGCATTCTTCAAGCTGGTGTTCATGTAGTTGTTGGTACACCTGGTCGTGTGTTTGATATGTTGCGTAGACAATCACTTCGCCCCGACTACATTCGGATGTTTGTATTGGATGAAGCTGATGAAATGCTTTCTCGTGGATTTAAGGATCAGATTTATGATATCTTCCAGCTTCTACCATCCAAGATTCAGGTAGGGGTGTTCTCTGCTACAATGCCTCCTGAAGCCCTTGAGATCACCAGAAAGTTCATGAACAAGCCTGTTAGAATTCTTGTTAAGCGTGACGAGCTCACCTTGGAAGGTATCAAGCAGTTCTATGTCAATGTTGACAAGGAAGACTGGAAGCTTGAGACACTCTGCGATCTTTACGAGACTTTGGCCATTACACAGAGTGTCATCTTCGTCAATACTCGACGTAAAGTTGATTGGCTCACTGATAAGATGCGAAGCCGTGACCACACTGTATCTGCTACCCATGGTGACATGGACCAGAACACCCGAGACATTATTATGCGTGAGTTCCGTTCAGGTTCTTCTAGGGTTCTGATTACCACTGATCTGTTGGCCCGTGGTATTGATGTCCAGCAGGTTTCTCTTGTTATTAACTATGATCTGCCGACACAACCAGAGAACTACCTTCATCGTATTGGACGAAGTGGACGATTTGGAAGAAAGGGTGTTGCGATCAACTTTGTAACGACAGAGGACGAAAGAATGCTATTTGACATTCAGAAGTTCTACAATGTGATAATTGAAGAGCTGCCAGCAAATGTTGCTGATCTTCTGTGA | 1242 | 44.28 | MAGLAPEGSQFDARQYDTKMNELLSADGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTEDERMLFDIQKFYNVIIEELPANVADLL | 413 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 17004019 | 17008196 | - | MELO3C013077.2.1 | Cme04g01226 | 325487 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme04g01226 | 413 | Gene3D | - | 249 | 413 | IPR027417 | - | |
| Cme04g01226 | 413 | Gene3D | - | 30 | 248 | IPR027417 | - | |
| Cme04g01226 | 413 | SMART | ultradead3 | 59 | 256 | IPR014001 | - | |
| Cme04g01226 | 413 | PANTHER | EUKARYOTIC INITIATION FACTOR 4A-2 | 23 | 413 | - | - | |
| Cme04g01226 | 413 | CDD | DEADc_EIF4A | 45 | 242 | - | - | |
| Cme04g01226 | 413 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 40 | 68 | IPR014014 | GO:0003724 | |
| Cme04g01226 | 413 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 252 | 413 | IPR001650 | - | |
| Cme04g01226 | 413 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 71 | 241 | IPR014001 | - | |
| Cme04g01226 | 413 | CDD | SF2_C_DEAD | 253 | 383 | - | - | |
| Cme04g01226 | 413 | Pfam | Helicase conserved C-terminal domain | 266 | 374 | IPR001650 | - | |
| Cme04g01226 | 413 | Pfam | DEAD/DEAH box helicase | 65 | 226 | IPR011545 | GO:0003676|GO:0005524 | |
| Cme04g01226 | 413 | PANTHER | RNA HELICASE | 23 | 413 | - | - | |
| Cme04g01226 | 413 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 187 | 195 | IPR000629 | - | |
| Cme04g01226 | 413 | SMART | helicmild6 | 293 | 374 | IPR001650 | - | |
| Cme04g01226 | 413 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 109 | 394 | IPR027417 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme04g01226 | Cme-Chr4:17004019 | Cme04g01583 | Cme-Chr4:23137930 | 0 | dispersed | |
| Cme03g01618 | Cme-Chr3:25079953 | Cme04g01226 | Cme-Chr4:17004019 | 1.39E-77 | transposed | |
| Cme06g00191 | Cme-Chr6:1170357 | Cme04g01226 | Cme-Chr4:17004019 | 7.76E-90 | transposed | |
| Cme06g00630 | Cme-Chr6:4051219 | Cme04g01226 | Cme-Chr4:17004019 | 3.93E-31 | transposed | |
| Cme06g01970 | Cme-Chr6:23949530 | Cme04g01226 | Cme-Chr4:17004019 | 2.80E-52 | transposed | |
| Cme08g00565 | Cme-Chr8:3567564 | Cme04g01226 | Cme-Chr4:17004019 | 7.79E-08 | transposed | |
| Cme11g01628 | Cme-Chr11:24147894 | Cme04g01226 | Cme-Chr4:17004019 | 3.79E-64 | transposed | |
| Cme12g00901 | Cme-Chr12:15851063 | Cme04g01226 | Cme-Chr4:17004019 | 3.19E-09 | transposed | |
| Cme01g02831 | Cme-Chr1:35251061 | Cme04g01226 | Cme-Chr4:17004019 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme04g01226 | K03257 | - | csv:101223055 | 816.994 |