Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01231 ATGATGGAAGAGATGTCCCCTGCTGTTTCTTTGACCCTTAGTTTGGGTAATCCAAAGTCTGATAGCTCAGTAAATCCTGGCCATGTTGAATTTACACGGCTAAAGTTAGTGACGGACACGGTAAACTTATTCTCTGCATCCTCCCCTGAGTCTGGTTCTATTGGTAATGGTAGTTGCCATGATTTTGATGGTTTAGTTGACAGCGTAACTGTGTCGCAACCGACTGATGGTGGTCAAGGTATAGACAGTTTTTGGGGGTTGCTGCCAAAGAGTGGCACGAATTTGACTGTAGATAAGGAAGATGCATCCTTGGCTACTCTGGATGACCCTGATGAAATGATAGAGGATGGATTGTTTGCTATTGATGGCGGTACAAGTATCAACGTGCAAGAAGTCGTCAAAATCGGAGATGTCAGTAATGGTCATATCGTTGCTAAGGCGATCATCTTGGTCGAATCAGGGAAGATCCCTACTAGTGAACTTATTGTGGCAACAGTAAGCCCTGATTTAGAAGTATCTGCATCGTCGGAGCTAAACGTTCCTGCAGTAGTTTTCCAATCGAAAGGGGCAGAAAGCGTTCATAAAGTCATTCGTAATGTCTTTGAACGGGATTGTATTCCCCTTTGGGGGTCCGTATCGATTTGTGGTAGAAGACCAGAAATGGAAGATGCGATTGCTGTTGTTCCTTGTTTTGCAAAGATTCCTATCAAAATGCTTGTAGGAAATAGTTTGCTGAATGGAATGGGTCAAAGTTTAACACATCTCAACAGCCATTTTTTTGGTGTTTATGATGGACATGGGGGCCCTCAGGTTGCTGATTATTGTCAAGAACGCATACACTTGGCACTAGCTGAAGAGATAAAAGGATTTAAACAAAATGAAGAAAATGGAAACAATGGAGAAAACTGGCAGCAGGATTGGGAGAGAACCTTCAACAATTGCTTTCTTAGGGTTGATGATGAAATAGAAGGAAAAGTTGGTAGACCAGTCAGTGGAAGCAGTGGAGATGTTTCCGATACAAGCTTTGAACCTGTTGCCCCAGAAACTGTTGGCTCTACGGCTGTTGTTGCCCTGGTCTGTTCGTCACACATCATAGTTGCAAACTGTGGTGATTCAAGAGCAGTTCTATGCCGTGGTAAAGAACCCATGGCTCTATCGGTCGATCATAAACCAAATCGCGCAGATGAATATGCTAGAATTGAATCATCTGGAGGCAAGGTCATCCAGTGGAACGGACATCGAGTGTTCGGAGTTCTTGCAATGTCAAGATCCATTGGTGATAGGTATTTGAAGCCATGGATTATTCCCGATCCAGAAGTCATGTTCATCCCTCGTGCGAAAGAAGACGAATGTCTTATTTTAGCCAGTGATGGACTGTGGGATGTGATGACAAATGAGGAAGTCTGTGAAGTAGCTCGAAGGCGAATTCTTCTTTGGCACAAGAAACACGGGGCTTCATCACTTGCCGATCGGGGCACAGGAGTTGACCCAGCTGCACAAGCTGCAGCAGATTACCTCTCAATGCTCGCTCTCCAAAAGGGAAGCAAAGACAACATCTCTGTGATTGTAGTGGACTTGAAAGCTCAAAGGAAGTTCAAGACCAAATCTTGA 1611 44.26 MMEEMSPAVSLTLSLGNPKSDSSVNPGHVEFTRLKLVTDTVNLFSASSPESGSIGNGSCHDFDGLVDSVTVSQPTDGGQGIDSFWGLLPKSGTNLTVDKEDASLATLDDPDEMIEDGLFAIDGGTSINVQEVVKIGDVSNGHIVAKAIILVESGKIPTSELIVATVSPDLEVSASSELNVPAVVFQSKGAESVHKVIRNVFERDCIPLWGSVSICGRRPEMEDAIAVVPCFAKIPIKMLVGNSLLNGMGQSLTHLNSHFFGVYDGHGGPQVADYCQERIHLALAEEIKGFKQNEENGNNGENWQQDWERTFNNCFLRVDDEIEGKVGRPVSGSSGDVSDTSFEPVAPETVGSTAVVALVCSSHIIVANCGDSRAVLCRGKEPMALSVDHKPNRADEYARIESSGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMFIPRAKEDECLILASDGLWDVMTNEEVCEVARRRILLWHKKHGASSLADRGTGVDPAAQAAADYLSMLALQKGSKDNISVIVVDLKAQRKFKTKS 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17057698 17061566 + MELO3C013082.2.1 Cme04g01231 325492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01231 536 MobiDBLite consensus disorder prediction 1 24 - -
Cme04g01231 536 PANTHER ALPHABET, ISOFORM E-RELATED 112 536 - -
Cme04g01231 536 Pfam Protein phosphatase 2C 236 519 IPR001932 -
Cme04g01231 536 ProSiteProfiles PPM-type phosphatase domain profile. 208 526 IPR001932 -
Cme04g01231 536 SUPERFAMILY PP2C-like 199 527 IPR036457 -
Cme04g01231 536 ProSitePatterns PPM-type phosphatase domain signature. 259 267 IPR000222 GO:0043169
Cme04g01231 536 SMART PP2C_4 198 524 IPR001932 -
Cme04g01231 536 Gene3D - 195 536 IPR036457 -
Cme04g01231 536 CDD PP2Cc 210 526 IPR001932 -
Cme04g01231 536 PANTHER PROTEIN PHOSPHATASE 2C 16 112 536 - -
Cme04g01231 536 MobiDBLite consensus disorder prediction 10 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00181 Cme-Chr3:2201117 Cme04g01231 Cme-Chr4:17057698 4.15E-69 dispersed
Cme03g01406 Cme-Chr3:23508330 Cme04g01231 Cme-Chr4:17057698 0 dispersed
Cme04g01231 Cme-Chr4:17057698 Cme06g01115 Cme-Chr6:8480427 9.20E-68 dispersed
Cme04g01231 Cme-Chr4:17057698 Cme12g00139 Cme-Chr12:1356184 5.06E-79 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01231 K14497 - csv:101203499 1040.8