Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01293 ATGAGGCACATTTATGGGATAACAGCTGTAGAAAAGAGGGACAAACAAGGAAGGGAAGGCAAGTTTAAATCAGGGGGTTATGATAAAGAAGAGAAAGCAGCGCGAGCTTATGATCTAGCTGCACTAAAATATTGGGGATCAACAACACATATAAATTTTCCTCTGAGCACTTACGAAAGCGAGCTGGAAGAAATGAAGAACATGACCAGACAAGAGTTTGTAGCCAATTTGAGAAGGAAAAGTAGTGGATTCTCAAGAGGAGCCTCAATGTACAGAGGAGTTACAAGACATCATCAACATGGAAGGTGGCAAGCTAGAATAGGAAGAGTAGCGGGAAATAAAGATCTGTATCTTGGGACATTTAGTACACAAGAGGAGGCGGCGGAGGCCTACGACATTGCAGCAATCAAGTTTAGGGGGACGAGTGCTGTGACAAATTTCGACATTAGTAGGTATGACGTAAAGAGGATTTGCTCTAGTTCGACTTTGATTGCTGGGGACCTTGCGAAACGATCACCATTAAAGGACGGTGTTCCCTCAACAACTGAAGACTATACCACTTGTGCTTCTCCATCATCGTCCTCACAGCCTCTCTTGGCCATTACGGATGGCAGTGCTGAGAGTCACCACGAGTTGGCTGACATGGTTTGGTGTGACAACGCTGTTGCAGATGATAGTAATCAACACCATGAGAATGTAGCAAAGATGGACAACGATTTGAGTTTGATGGGTTCGAGCAATAGAACGATAGATGCATCAACGAAGTGCTCCCCAGTGCGAAACAATGAGGAGTTTGCTGGGATTGGGGTTGGGGTCGGTGTGGGGGGAGGAGATCAGTATCCGCAAGGATATTTTTCAATGCAAGAAGAAAAGTATGAAGAGGGGGATCAAAATAGGCAAATGAATGTAACGTTGGGTCATCATCATGCTCCAATGTTTGCTCTATGGAATCAATGA 957 44.62 MRHIYGITAVEKRDKQGREGKFKSGGYDKEEKAARAYDLAALKYWGSTTHINFPLSTYESELEEMKNMTRQEFVANLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPLKDGVPSTTEDYTTCASPSSSSQPLLAITDGSAESHHELADMVWCDNAVADDSNQHHENVAKMDNDLSLMGSSNRTIDASTKCSPVRNNEEFAGIGVGVGVGGGDQYPQGYFSMQEEKYEEGDQNRQMNVTLGHHHAPMFALWNQ 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18125009 18128645 + MELO3C025807.2.1 Cme04g01293 325554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01293 318 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 12 247 - -
Cme04g01293 318 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12 247 - -
Cme04g01293 318 SUPERFAMILY DNA-binding domain 20 56 IPR016177 GO:0003677
Cme04g01293 318 PRINTS Ethylene responsive element binding protein signature 91 102 IPR001471 GO:0003700|GO:0006355
Cme04g01293 318 PRINTS Ethylene responsive element binding protein signature 130 150 IPR001471 GO:0003700|GO:0006355
Cme04g01293 318 ProSiteProfiles AP2/ERF domain profile. 90 148 IPR001471 GO:0003700|GO:0006355
Cme04g01293 318 CDD AP2 89 150 IPR001471 GO:0003700|GO:0006355
Cme04g01293 318 Gene3D AP2/ERF domain 90 150 IPR036955 GO:0003700|GO:0006355
Cme04g01293 318 Gene3D AP2/ERF domain 4 56 IPR036955 GO:0003700|GO:0006355
Cme04g01293 318 SUPERFAMILY DNA-binding domain 89 150 IPR016177 GO:0003677
Cme04g01293 318 SMART rav1_2 90 154 IPR001471 GO:0003700|GO:0006355
Cme04g01293 318 SMART rav1_2 3 60 IPR001471 GO:0003700|GO:0006355
Cme04g01293 318 ProSiteProfiles AP2/ERF domain profile. 1 54 IPR001471 GO:0003700|GO:0006355
Cme04g01293 318 Pfam AP2 domain 91 140 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02125 Cme-Chr3:28479280 Cme04g01293 Cme-Chr4:18125009 8.37E-88 dispersed
Cme04g01293 Cme-Chr4:18125009 Cme07g00259 Cme-Chr7:1695945 8.14E-08 dispersed
Cme04g01293 Cme-Chr4:18125009 Cme08g00672 Cme-Chr8:4410391 1.61E-09 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41193 PF00847 AP2 2.90E-10 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01293 K09285 - csv:101205762 542.732