Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01310 ATGAGACCTTTCCAGCCGCCTCCAGGTACAAATCCTCCCACCGATCGTACTCGTCGCCGTCCCCATCTAAATCTCCATCTTCCTCAACGGGACAACACATCTTTGGCTGTTCCTCTTCCTTTGCCTCCAACCTCCTCCAACTCTGCGCCTCCTCCTTCCACCAGTCAACTCCACAACGCCAATCGCCCCCCTGACCCTCATCCTCACCAACGTCAACCTTTCACCCTTTCTGAGTTTGAGCGTGTCAGCCGAATCGGAAGCGGATGTGGAGGTACCGTTTACAAAGTCGTTCACCGTCCCACCGGTCGTGTTTATGCTCTCAAGGTCATTTACGGAAACCACGAAGATGCGGTTAGGCTTCAGATGTGCCGTGAGGTCGAGATCCTTCGTGACGTTGACAATCCCTATGTTGTTAAGTGCCATGATATGTTTGATCATAACGGTGAAATCCAGGTTCTTCTTGAGTATATGGATCGGGGTTCTTTGGAAGGAACACACATCCCTCAAGAACATCAACTCTCTGATTTGGCTCGCCAGATTCTTAGCGGTCTTGCTTATCTTCATAGCCGACGTATCGTTCATCGCGATATCAAACCGTCCAATCTTCTTATCAATTCTCGAAGGCAGGTTAAGATCGCTGATTTTGGCGTCGGTCGAATCTTGGAACAGACTATGGACCCTTGTAATTCCTCGGTTGGGACTATTGCGTATATGAGCCCTGAGAGAATCAATTCCGATCTAAATCAGGGTCAGTACAATGGTTATGCAGGGGATATTTGGAGCTTTGGGGTTAGCATATTGGAATTCTATCTGGGTCGCTTTCCTCTTGCTGTTGAGAGGCCTGGGGATTGGGCTAGCTTGATGTGTGCTATATGTATGGCTCAGCCACCAGAGGCCCCGGCCACTGCTTCACCGGAGTTCCGCCACTTTATTGCTTGTTGTTTGCAAAGAGAAGCTCGGAAGAGATGGACTGCAGCTGCATTACTGGAGCATGCGTTCATAACAAGGAAAAATGGAGCAAGTCAGTTCCAGAATAAGCAAGCTCATCATCAGAATCTTCGTCAACTATTACCTCCTCCGCCTCTTCATCCTTCCAGCCTTTCTTGA 1107 49.14 MRPFQPPPGTNPPTDRTRRRPHLNLHLPQRDNTSLAVPLPLPPTSSNSAPPPSTSQLHNANRPPDPHPHQRQPFTLSEFERVSRIGSGCGGTVYKVVHRPTGRVYALKVIYGNHEDAVRLQMCREVEILRDVDNPYVVKCHDMFDHNGEIQVLLEYMDRGSLEGTHIPQEHQLSDLARQILSGLAYLHSRRIVHRDIKPSNLLINSRRQVKIADFGVGRILEQTMDPCNSSVGTIAYMSPERINSDLNQGQYNGYAGDIWSFGVSILEFYLGRFPLAVERPGDWASLMCAICMAQPPEAPATASPEFRHFIACCLQREARKRWTAAALLEHAFITRKNGASQFQNKQAHHQNLRQLLPPPPLHPSSLS 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18460759 18461865 + MELO3C025790.2.1 Cme04g01310 325571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01310 368 MobiDBLite consensus disorder prediction 1 72 - -
Cme04g01310 368 SMART serkin_6 79 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g01310 368 Gene3D Transferase(Phosphotransferase) domain 1 160 356 - -
Cme04g01310 368 SUPERFAMILY Protein kinase-like (PK-like) 54 353 IPR011009 -
Cme04g01310 368 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 15 356 - -
Cme04g01310 368 CDD PKc_MAPKK_plant_like 77 335 - -
Cme04g01310 368 MobiDBLite consensus disorder prediction 344 368 - -
Cme04g01310 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Cme04g01310 368 Gene3D Phosphorylase Kinase; domain 1 57 158 - -
Cme04g01310 368 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4 15 356 - -
Cme04g01310 368 ProSitePatterns Protein kinases ATP-binding region signature. 85 108 IPR017441 GO:0005524
Cme04g01310 368 ProSiteProfiles Protein kinase domain profile. 79 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g01310 368 Pfam Protein kinase domain 79 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01310 Cme-Chr4:18460759 Cme12g01812 Cme-Chr12:24587517 7.17E-99 dispersed
Cme04g01310 Cme-Chr4:18460759 Cme05g02055 Cme-Chr5:28855837 7.56E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64813 PF00069 Pkinase 1.70E-60 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01310 K13413 - csv:101219669 664.84