Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01310 ATGAGACCTTTCCAGCCGCCTCCAGGTACAAATCCTCCCACCGATCGTACTCGTCGCCGTCCCCATCTAAATCTCCATCTTCCTCAACGGGACAACACATCTTTGGCTGTTCCTCTTCCTTTGCCTCCAACCTCCTCCAACTCTGCGCCTCCTCCTTCCACCAGTCAACTCCACAACGCCAATCGCCCCCCTGACCCTCATCCTCACCAACGTCAACCTTTCACCCTTTCTGAGTTTGAGCGTGTCAGCCGAATCGGAAGCGGATGTGGAGGTACCGTTTACAAAGTCGTTCACCGTCCCACCGGTCGTGTTTATGCTCTCAAGGTCATTTACGGAAACCACGAAGATGCGGTTAGGCTTCAGATGTGCCGTGAGGTCGAGATCCTTCGTGACGTTGACAATCCCTATGTTGTTAAGTGCCATGATATGTTTGATCATAACGGTGAAATCCAGGTTCTTCTTGAGTATATGGATCGGGGTTCTTTGGAAGGAACACACATCCCTCAAGAACATCAACTCTCTGATTTGGCTCGCCAGATTCTTAGCGGTCTTGCTTATCTTCATAGCCGACGTATCGTTCATCGCGATATCAAACCGTCCAATCTTCTTATCAATTCTCGAAGGCAGGTTAAGATCGCTGATTTTGGCGTCGGTCGAATCTTGGAACAGACTATGGACCCTTGTAATTCCTCGGTTGGGACTATTGCGTATATGAGCCCTGAGAGAATCAATTCCGATCTAAATCAGGGTCAGTACAATGGTTATGCAGGGGATATTTGGAGCTTTGGGGTTAGCATATTGGAATTCTATCTGGGTCGCTTTCCTCTTGCTGTTGAGAGGCCTGGGGATTGGGCTAGCTTGATGTGTGCTATATGTATGGCTCAGCCACCAGAGGCCCCGGCCACTGCTTCACCGGAGTTCCGCCACTTTATTGCTTGTTGTTTGCAAAGAGAAGCTCGGAAGAGATGGACTGCAGCTGCATTACTGGAGCATGCGTTCATAACAAGGAAAAATGGAGCAAGTCAGTTCCAGAATAAGCAAGCTCATCATCAGAATCTTCGTCAACTATTACCTCCTCCGCCTCTTCATCCTTCCAGCCTTTCTTGA 1107 49.14 MRPFQPPPGTNPPTDRTRRRPHLNLHLPQRDNTSLAVPLPLPPTSSNSAPPPSTSQLHNANRPPDPHPHQRQPFTLSEFERVSRIGSGCGGTVYKVVHRPTGRVYALKVIYGNHEDAVRLQMCREVEILRDVDNPYVVKCHDMFDHNGEIQVLLEYMDRGSLEGTHIPQEHQLSDLARQILSGLAYLHSRRIVHRDIKPSNLLINSRRQVKIADFGVGRILEQTMDPCNSSVGTIAYMSPERINSDLNQGQYNGYAGDIWSFGVSILEFYLGRFPLAVERPGDWASLMCAICMAQPPEAPATASPEFRHFIACCLQREARKRWTAAALLEHAFITRKNGASQFQNKQAHHQNLRQLLPPPPLHPSSLS 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18460759 18461865 + MELO3C025790.2.1 Cme04g01310 325571

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01310 368 MobiDBLite consensus disorder prediction 1 72 - -
Cme04g01310 368 SMART serkin_6 79 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g01310 368 Gene3D Transferase(Phosphotransferase) domain 1 160 356 - -
Cme04g01310 368 SUPERFAMILY Protein kinase-like (PK-like) 54 353 IPR011009 -
Cme04g01310 368 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 15 356 - -
Cme04g01310 368 CDD PKc_MAPKK_plant_like 77 335 - -
Cme04g01310 368 MobiDBLite consensus disorder prediction 344 368 - -
Cme04g01310 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Cme04g01310 368 Gene3D Phosphorylase Kinase; domain 1 57 158 - -
Cme04g01310 368 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4 15 356 - -
Cme04g01310 368 ProSitePatterns Protein kinases ATP-binding region signature. 85 108 IPR017441 GO:0005524
Cme04g01310 368 ProSiteProfiles Protein kinase domain profile. 79 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g01310 368 Pfam Protein kinase domain 79 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01310 K13413 MKK4_5; mitogen-activated protein kinase kinase 4/5 [EC:2.7.12.2] - csv:101219669 664.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01310 Cme-Chr4:18460759 Cme12g01812 Cme-Chr12:24587517 7.17E-99 dispersed
Cme04g01310 Cme-Chr4:18460759 Cme05g02055 Cme-Chr5:28855837 7.56E-65 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme02g00272 CCT 28 338 MAP Kinase Kinase Gene Family AT4G26070 67.8 8.9e-127 450.3
Cme05g02055 CCT 7 303 MAP Kinase Kinase Gene Family AT4G26070 67.1 1.2e-115 413.3
Cme05g02012 . 28 353 MAP Kinase Kinase Gene Family AT4G26070 55.3 1.6e-107 386.3
Cme02g00272 CCT 1 311 MAP Kinase Kinase Gene Family AT4G29810 67.8 2.6e-126 448.7
Cme05g02012 . 12 326 MAP Kinase Kinase Gene Family AT4G29810 59.7 2.6e-110 395.6
Cme05g02055 CCT 9 277 MAP Kinase Kinase Gene Family AT4G29810 66.7 1.1e-105 380.2
Cme04g01845 . 115 599 MAP Kinase Kinase Gene Family AT5G40440 78.8 6.6e-227 783.5
Cme04g01310 . 1 366 MAP Kinase Kinase Gene Family AT1G51660 71.7 2.4e-130 462.2
Cme12g01812 . 5 313 MAP Kinase Kinase Gene Family AT1G51660 50.5 1.6e-84 310.1
Cme04g01310 . 1 366 MAP Kinase Kinase Gene Family AT3G21220 68.7 1.5e-129 459.5
Cme12g01812 . 41 311 MAP Kinase Kinase Gene Family AT3G21220 55.0 5.1e-85 311.6
Cme05g02012 . 3 356 MAP Kinase Kinase Gene Family AT5G56580 83.7 8.1e-171 596.7
Cme02g00272 CCT 7 337 MAP Kinase Kinase Gene Family AT5G56580 55.9 2.3e-109 392.5
Cme05g02055 CCT 14 292 MAP Kinase Kinase Gene Family AT5G56580 59.8 2.4e-98 355.9
Cme12g01812 . 1 313 MAP Kinase Kinase Gene Family AT1G18350 63.9 4.4e-109 391.3
Cme04g01310 . 77 334 MAP Kinase Kinase Gene Family AT1G18350 53.2 1.7e-76 283.1
Cme12g01812 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 52.3 1.3e-81 300.1
Cme12g01812 . 1 309 MAP Kinase Kinase Gene Family AT1G73500 66.8 4.6e-114 407.9
Cme04g01310 . 78 334 MAP Kinase Kinase Gene Family AT1G73500 52.7 3.5e-77 285.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009405 0 1 0 1 0 1 2 1 1 1 1 1 2 1 1 1 1 3 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64813 PF00069 Pkinase 1.70E-60 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g01310 Cme_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0