Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme04g01310 | ATGAGACCTTTCCAGCCGCCTCCAGGTACAAATCCTCCCACCGATCGTACTCGTCGCCGTCCCCATCTAAATCTCCATCTTCCTCAACGGGACAACACATCTTTGGCTGTTCCTCTTCCTTTGCCTCCAACCTCCTCCAACTCTGCGCCTCCTCCTTCCACCAGTCAACTCCACAACGCCAATCGCCCCCCTGACCCTCATCCTCACCAACGTCAACCTTTCACCCTTTCTGAGTTTGAGCGTGTCAGCCGAATCGGAAGCGGATGTGGAGGTACCGTTTACAAAGTCGTTCACCGTCCCACCGGTCGTGTTTATGCTCTCAAGGTCATTTACGGAAACCACGAAGATGCGGTTAGGCTTCAGATGTGCCGTGAGGTCGAGATCCTTCGTGACGTTGACAATCCCTATGTTGTTAAGTGCCATGATATGTTTGATCATAACGGTGAAATCCAGGTTCTTCTTGAGTATATGGATCGGGGTTCTTTGGAAGGAACACACATCCCTCAAGAACATCAACTCTCTGATTTGGCTCGCCAGATTCTTAGCGGTCTTGCTTATCTTCATAGCCGACGTATCGTTCATCGCGATATCAAACCGTCCAATCTTCTTATCAATTCTCGAAGGCAGGTTAAGATCGCTGATTTTGGCGTCGGTCGAATCTTGGAACAGACTATGGACCCTTGTAATTCCTCGGTTGGGACTATTGCGTATATGAGCCCTGAGAGAATCAATTCCGATCTAAATCAGGGTCAGTACAATGGTTATGCAGGGGATATTTGGAGCTTTGGGGTTAGCATATTGGAATTCTATCTGGGTCGCTTTCCTCTTGCTGTTGAGAGGCCTGGGGATTGGGCTAGCTTGATGTGTGCTATATGTATGGCTCAGCCACCAGAGGCCCCGGCCACTGCTTCACCGGAGTTCCGCCACTTTATTGCTTGTTGTTTGCAAAGAGAAGCTCGGAAGAGATGGACTGCAGCTGCATTACTGGAGCATGCGTTCATAACAAGGAAAAATGGAGCAAGTCAGTTCCAGAATAAGCAAGCTCATCATCAGAATCTTCGTCAACTATTACCTCCTCCGCCTCTTCATCCTTCCAGCCTTTCTTGA | 1107 | 49.14 | MRPFQPPPGTNPPTDRTRRRPHLNLHLPQRDNTSLAVPLPLPPTSSNSAPPPSTSQLHNANRPPDPHPHQRQPFTLSEFERVSRIGSGCGGTVYKVVHRPTGRVYALKVIYGNHEDAVRLQMCREVEILRDVDNPYVVKCHDMFDHNGEIQVLLEYMDRGSLEGTHIPQEHQLSDLARQILSGLAYLHSRRIVHRDIKPSNLLINSRRQVKIADFGVGRILEQTMDPCNSSVGTIAYMSPERINSDLNQGQYNGYAGDIWSFGVSILEFYLGRFPLAVERPGDWASLMCAICMAQPPEAPATASPEFRHFIACCLQREARKRWTAAALLEHAFITRKNGASQFQNKQAHHQNLRQLLPPPPLHPSSLS | 368 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 18460759 | 18461865 | + | MELO3C025790.2.1 | Cme04g01310 | 325571 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme04g01310 | 368 | MobiDBLite | consensus disorder prediction | 1 | 72 | - | - | |
Cme04g01310 | 368 | SMART | serkin_6 | 79 | 334 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme04g01310 | 368 | Gene3D | Transferase(Phosphotransferase) domain 1 | 160 | 356 | - | - | |
Cme04g01310 | 368 | SUPERFAMILY | Protein kinase-like (PK-like) | 54 | 353 | IPR011009 | - | |
Cme04g01310 | 368 | PANTHER | MITOGEN-ACTIVATED KINASE KINASE KINASE | 15 | 356 | - | - | |
Cme04g01310 | 368 | CDD | PKc_MAPKK_plant_like | 77 | 335 | - | - | |
Cme04g01310 | 368 | MobiDBLite | consensus disorder prediction | 344 | 368 | - | - | |
Cme04g01310 | 368 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 192 | 204 | IPR008271 | GO:0004672|GO:0006468 | |
Cme04g01310 | 368 | Gene3D | Phosphorylase Kinase; domain 1 | 57 | 158 | - | - | |
Cme04g01310 | 368 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4 | 15 | 356 | - | - | |
Cme04g01310 | 368 | ProSitePatterns | Protein kinases ATP-binding region signature. | 85 | 108 | IPR017441 | GO:0005524 | |
Cme04g01310 | 368 | ProSiteProfiles | Protein kinase domain profile. | 79 | 334 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme04g01310 | 368 | Pfam | Protein kinase domain | 79 | 334 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme04g01310 | Cme-Chr4:18460759 | Cme12g01812 | Cme-Chr12:24587517 | 7.17E-99 | dispersed | |
Cme04g01310 | Cme-Chr4:18460759 | Cme05g02055 | Cme-Chr5:28855837 | 7.56E-65 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64813 | PF00069 | Pkinase | 1.70E-60 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme04g01310 | K13413 | - | csv:101219669 | 664.84 |