Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01362 ATGGACCCTTCTCTTGAACTTTCGGAAACGCCTGAGCAGATTATACTACGCTGGGATTCCGCCGCCCCCGATGAGGTCAAAGATAAGATGATTTTTGACTCCGATAGGGAAGAGATCGACCGTTACTTGCAGGCTGTCGATGAAATCCAGAGGTCTATCTCCTCTGCTCCCATTTCTGACGATCACAACAAAGCTGATTCCACTATGCAGATCGCTATGGCTAGGCTTGAAGATGAGTTTCGTCACATTCTCTCCAGTCATACCACTCCGATCGAGGTTGACTCGCTTACCGATCCCAGTCCCTCTTCTCGTTCTATGTCCACTAGTGCTAGTGGTGTGTTCGAGGATGAAAACGACGATGAACCCGACTTACAGGAAGTTCAGCTTGATTTAACAGGTAGTCCAAGTTTTGGGTCCAGTGGTCGATCCAGCTACCGGGCGACTAGCAGTATTCGTGAAATTGATCTCATACCTTCCGATGCGGTTATTGATCTACGAAGTATTGCTGAGAGGATGATTTCGGCGGGTTACCTGCGCGAGTGCATCCAAGTTTATGGCAGTGTGCGTAAGTCCACCTTCGATTCCAGCTTCCGGCGGCTCGGAATTGAAAAACTAAGCATTGGAGATATCCAGAGGCTGGATTGGAACGAGCTGGAGACGAAGATCAGAAGGTGGATTAGAGCAGCTAAGGTTTCTATTAGGACTTTGTTTTCCAGTGAGAAGAAACTTTGCGAGCAAATTTTTTATGGCATAGGGACCGCCATAGATGATGCTTGTTTCATGGAGACCGTAAAAGGTCCTGTGACTCAGTTGTTCAATTTCGCAGAGGCGATCAGTATAAGCCGCAGATCGCCGGAGAAGCTGTTCAAGATTCTAGACCTCCACGATGCCTTGACGGAGTTGATATCTGACATTGATGTGATATTCGAATCAAAATCCGCGGAGTATATTCGGATTCAGGCCGCGGAGATAGTGTCGCGGCTAGCGGAGGCCGTCAGAGGGACTTTATCGGAGTTTGAAAATGCAGTGCTGCGGGAGCCGTCGCTGCATCCAGTTCCCGGCGGGACGCTTCATCCGTTGACAAGGTACGTAATGAACTATGTGAGTCTGATTTCGGACTACAAAGTGACCTTAGACGAGCTCATCGTGTCCAAACCATCGACGGGCTCGAGGTACTCGGCCGACCCCTCGATTCCAGATATGGACTTCGGTGAGCTAGAGGGAAAAACGCCATTAGCGCTCCATCTTATATGGAGTATCGTGATTCTGCAATTCAACTTGGAGGGCAAGTCCAGGCACTACAGAGACCCTTCTCTAGCTCATCTCTTCATCATGAACAACGTTCATTACATCGTTCAAAAGATAAAAGGATCCCCGGAGTTGCGAGAAATGATCGGAGATGTTTATCTGAAAAGACTTACCGGGAAGTATCGACAGGCGGCGACAAACTACGAGAGAACAACGTGGGTGAATGTGCTGTATTGCCTACGAAACGAAGGGTTGAATGTGGGGGGGAGCTTATCTTCCGGCCCTGCAAAGAGCCTAATTAGAGATAGATTCAAGACTTTCAACGCCATGTTTGAGGAGGTTCACCGGACACAATCATCATGGTTGATACCAGATTCTCAGCTGAGGGAGGAGCTACGCATATCCATAATTGAGAAGTTGATCCCAGCTTACAGGTCGTTTCTTGGCCTCCATGGCCACCACATAGAGAGTGGAAGACACCCCGAAAATTACATCAAATACTCGGTTGAGGAACTCGAAAATGCCATCTTGGATTTCTTTGAGGGTTGCTCTGTAACCCATAACTTGAGAAGGAGATCTCACTGA 1833 48.28 MDPSLELSETPEQIILRWDSAAPDEVKDKMIFDSDREEIDRYLQAVDEIQRSISSAPISDDHNKADSTMQIAMARLEDEFRHILSSHTTPIEVDSLTDPSPSSRSMSTSASGVFEDENDDEPDLQEVQLDLTGSPSFGSSGRSSYRATSSIREIDLIPSDAVIDLRSIAERMISAGYLRECIQVYGSVRKSTFDSSFRRLGIEKLSIGDIQRLDWNELETKIRRWIRAAKVSIRTLFSSEKKLCEQIFYGIGTAIDDACFMETVKGPVTQLFNFAEAISISRRSPEKLFKILDLHDALTELISDIDVIFESKSAEYIRIQAAEIVSRLAEAVRGTLSEFENAVLREPSLHPVPGGTLHPLTRYVMNYVSLISDYKVTLDELIVSKPSTGSRYSADPSIPDMDFGELEGKTPLALHLIWSIVILQFNLEGKSRHYRDPSLAHLFIMNNVHYIVQKIKGSPELREMIGDVYLKRLTGKYRQAATNYERTTWVNVLYCLRNEGLNVGGSLSSGPAKSLIRDRFKTFNAMFEEVHRTQSSWLIPDSQLREELRISIIEKLIPAYRSFLGLHGHHIESGRHPENYIKYSVEELENAILDFFEGCSVTHNLRRRSH 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19219097 19221572 - MELO3C022677.2.1 Cme04g01362 325623

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01362 610 Gene3D Exocyst complex component Exo70 124 606 - -
Cme04g01362 610 Gene3D Exocyst complex component Exo70 14 121 - -
Cme04g01362 610 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 7 609 - -
Cme04g01362 610 PANTHER EXOCYST COMPLEX PROTEIN EXO70 7 609 IPR004140 GO:0000145|GO:0006887
Cme04g01362 610 MobiDBLite consensus disorder prediction 90 121 - -
Cme04g01362 610 Pfam Exo70 exocyst complex subunit 224 593 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cme04g01362 610 SUPERFAMILY Cullin repeat-like 11 597 IPR016159 -
Cme04g01362 610 MobiDBLite consensus disorder prediction 90 113 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01362 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101204229 1159.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01362 Cme-Chr4:19219097 Cme12g01592 Cme-Chr12:23218332 2.75E-154 dispersed
Cme12g00256 Cme-Chr12:2931087 Cme04g01362 Cme-Chr4:19219097 2.58E-96 dispersed
Cme12g01942 Cme-Chr12:25362669 Cme04g01362 Cme-Chr4:19219097 1.21E-95 dispersed
Cme04g01362 Cme-Chr4:19219097 Cme11g01259 Cme-Chr11:19404241 4.82E-111 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g67 Blo05g00033 Blo06g00756 Bda04g00941 Bda10g00882 Bpe06g00808 Bpe10g00709 . . . . Cma01g00010 . Car01g00006 Car14g01052 . . . Bhi01g02900 . . Lac12g2533 . . . . . . . . . . Cone20ag1348 Cone17ag0057 . . . . . . . . . . . . Bma09g00990 Bma15g00313 . Cmo01g00011 . . . . . . . . . . . . . . . . . . . . . . Csa03g02774 . Cme04g01362
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme10g00165 . 14 651 EXO70 exocyst subunit family AT5G03540 77.1 5.7e-287 983.4
Cme08g01155 . 58 696 EXO70 exocyst subunit family AT5G03540 70.6 1.5e-263 905.6
Cme08g01155 . 58 696 EXO70 exocyst subunit family AT5G52340 79.7 1.3e-296 1015.4
Cme10g00165 . 16 651 EXO70 exocyst subunit family AT5G52340 74.2 9.3e-271 929.5
Cme08g01155 . 202 689 EXO70 exocyst subunit family AT5G52350 63.2 5.8e-174 607.8
Cme10g00165 . 151 651 EXO70 exocyst subunit family AT5G52350 60.6 1.2e-168 590.1
Cme12g00048 . 46 668 EXO70 exocyst subunit family AT5G58430 67.4 1.2e-246 849.4
Cme12g00048 . 46 667 EXO70 exocyst subunit family AT1G07000 53.0 2.2e-176 615.9
Cme07g01926 . 62 675 EXO70 exocyst subunit family AT5G13150 53.9 1.0e-171 600.5
Cme09g01028 . 99 710 EXO70 exocyst subunit family AT5G13990 54.2 5.2e-190 661.4
Cme04g01362 . 9 609 EXO70 exocyst subunit family AT1G72470 64.4 4.3e-215 744.6
Cme04g01362 . 9 607 EXO70 exocyst subunit family AT1G54090 62.2 2.2e-208 722.2
Cme04g01362 . 9 608 EXO70 exocyst subunit family AT3G14090 64.7 9.6e-220 760.0
Cme02g00990 . 13 651 EXO70 exocyst subunit family AT5G50380 62.6 3.3e-229 791.6
Cme12g01592 . 1 635 EXO70 exocyst subunit family AT5G50380 61.8 8.3e-225 776.9
Cme03g01702 . 13 682 EXO70 exocyst subunit family AT4G31540 73.2 4.2e-293 1003.8
Cme11g01259 . 33 598 EXO70 exocyst subunit family AT3G55150 50.3 3.1e-149 525.8
Cme04g02590 . 27 632 EXO70 exocyst subunit family AT3G09520 54.4 1.4e-178 623.2
Cme11g01259 . 16 598 EXO70 exocyst subunit family AT5G59730 50.8 1.4e-154 543.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007044 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g01362 Cme_Chr04 FPKM 0.872781 0.686649 1.500251 0.597248 1.155 1.338779 1.11969 1.056334 0.93477 1.316065