Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01382 ATGCTTCATTCAGTAGTAGCTGCTAGACAAACTTGTAGCCTACTTGCTGTCACCTGCGGAAATGTACCTAAAGTACAATGCGAGGAGGAAATTGATGAGGATAAGTTAAAATATCCATTTCCTGAGTTAGTTTCTTCCGGACGATTGGAGGTTCGGGTTTTGGCAAATCCAAGCAAGGATGAATTTAGTAGAATTGTGGAATCATGGCTGCCGAGCTTTGTCTACTTGCAAGGGGAACAACTTGGTAGTGACGAAATTGGCTCCTTGGTTTGGAATGATGTTGATTTGTCTCTTGAAGATTTATGTGGACTATTCAATACTGCACTACCAACCATTGTGTATTTAGAAATCCCAAATGGAGGCAGAATTGCGGAGGCTCTTCATTCTAAGGGAATTCCTTATCTCATGTATTGGAACAGCACATTTTCATCTTATGCTGCAGCTCATTTTCGTAATGCGTTGCTTTCAGTGGTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCGCGTGCTGCTTTTAGGCTTTATTGTGTGGGGAGCAATTATGATCTGACTGTGATTGCTGATGACAATATGATGCGTGATCTAGAGCCACAGCTTATTGGGGAACCCCTAAAGATTGATGTAGAACCACCTGAGGTAGAGGTAGGTGAAGGTGAAGATGAAGATGGTTCTTTAGAAGCCCTCCCAGCCATAAGTATTCATGATAATAATGTGACCATGAGATTTCTTATCTGTGGATTGCCTTGCACACCGGATGCCTGCTTATTGAGATCATTGGAGGACGGCCTTAATGCACTTTTGAAGATTGAAATACGTGGGAGTAAACTCCAGGGAAAGTTCAGTGCTCCTCCACCACCTCTTCAAGCGGGATCTTTTTCTCGTGGAGTTGTGACAATGCGATGTGATATAGTGACTTGTAGTTCAGCCCACATCTCAATTTTGGTGTCTGGTAGTGCTCATACTTGTTTTGATGATCAGCTCCTGGAGAAACATATCAAACACGAAATCATAGAAAATAGCCAATTAGTTCATGCCATACATGACTGTGAAGGCAACAAGCATCACGTGCACGAGCCTCGTAAATCTGCTTCAATTGCATGTGGGGCAGCAGTATTTGAGGTTTCCATGAAGGTTCCTGCTTGGGCATCACAGGTCTTGAGGCAACTTGCACCTGATATCTCATATCGGAGTTTAGTTGCACTCGGCATTGGGGGAGTTCAGGGTTTACCTGTTGCTTCTTTTGAGAAAGAGGATGCTGAGCGACTGCTCTTCTTTTGCTCAGGGGATTGGAATGATAAATATTCAGAGCAGTTACTTGTAAGTGTATTACCCAGCTGGTTTAAGCCACCTACTCCTAGTAGAAGGAGAGTAGAACCAAGCCAAGGAATAAGGAATAGTCTTTCACATGACAGTCTTTCATATGCAAACATCCCTGCCATTAGAAGAGTAGGTAGAGAGGACCCTGTACCAATGAATGGGTTCAAGGCATCCTTACACCCAGCGAGGAAAAAATTAAAAGTAGCCTCCATGAGGCCTGTTCCACGATTGCATAGGAATAAAATATCACCTTTTGCTGGATTGACTGAAGTAGATGGGAACAATGGAGGCCTATCCAAGGCTAGTTTATCTGTTGTTACCCTGCCAAAGCATGTAACTGTAGGATCAACTTCTGCGACACACAGAAAATCTTTTTCAAGCTCATCTCAGTCTAAGCAGATTATTTCCTTAAACCCACTGCCTCTAAAGAAGCATGGTTGTGGAAGAAACCCAATTCAAGATTGCTCAGAGGAGGAGTTCTTGAAAGATGTTATGGAGTTTTTACTACTTAGAGGACATACACGACTTATTCCTCAAGGTGGACTTGAGGAGTTTCCGGATGCCATACTCAATGGGAAGCGTCTTGACCTCTATAACTTGTATAAAGAGGTGGTCACCCGAGGAGGCTTTCACGTGGGCAATGGTATCAACTGGAAGGGGCAGATCTTCTCTAAGATGCACAATTATACAATGACCAATAGAATGACTGGTGTTGGAAATACACTGAAAAGACATTATGAGACTTACCTTCTAGAATATGAATTGGCTCATGATGATGTAGATGGAGAATGCTGTCTTTTGTGCCACAGTAGTGCAGCAGGGGACTGGGTGAACTGTGGTATTTGTGGTGAATGGGCTCATTTTGGGTGTGATCGAAGGCAGGGCCTAGGAGCATTTAAGGATTATGCCAAAACAGATGGGCTAGAGTATGTTTGTCCACATTGTAGTATTACAACTTACAAGAAGAAACCACACCGAGTAGCAAATGGGTCTCCGCAAGGAATAACAAATCCACGGATACCTTGA 2355 43.23 MLHSVVAARQTCSLLAVTCGNVPKVQCEEEIDEDKLKYPFPELVSSGRLEVRVLANPSKDEFSRIVESWLPSFVYLQGEQLGSDEIGSLVWNDVDLSLEDLCGLFNTALPTIVYLEIPNGGRIAEALHSKGIPYLMYWNSTFSSYAAAHFRNALLSVVQSSSTHTWDAFQLARAAFRLYCVGSNYDLTVIADDNMMRDLEPQLIGEPLKIDVEPPEVEVGEGEDEDGSLEALPAISIHDNNVTMRFLICGLPCTPDACLLRSLEDGLNALLKIEIRGSKLQGKFSAPPPPLQAGSFSRGVVTMRCDIVTCSSAHISILVSGSAHTCFDDQLLEKHIKHEIIENSQLVHAIHDCEGNKHHVHEPRKSASIACGAAVFEVSMKVPAWASQVLRQLAPDISYRSLVALGIGGVQGLPVASFEKEDAERLLFFCSGDWNDKYSEQLLVSVLPSWFKPPTPSRRRVEPSQGIRNSLSHDSLSYANIPAIRRVGREDPVPMNGFKASLHPARKKLKVASMRPVPRLHRNKISPFAGLTEVDGNNGGLSKASLSVVTLPKHVTVGSTSATHRKSFSSSSQSKQIISLNPLPLKKHGCGRNPIQDCSEEEFLKDVMEFLLLRGHTRLIPQGGLEEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITTYKKKPHRVANGSPQGITNPRIP 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19635342 19641045 - MELO3C022696.2.1 Cme04g01382 325643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01382 784 ProSiteProfiles ARID domain profile. 597 701 IPR001606 GO:0003677
Cme04g01382 784 SUPERFAMILY FYVE/PHD zinc finger 693 761 IPR011011 -
Cme04g01382 784 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 698 767 IPR013083 -
Cme04g01382 784 SUPERFAMILY ARID-like 597 712 IPR036431 GO:0003677
Cme04g01382 784 CDD ARID 599 697 - -
Cme04g01382 784 Pfam ARID/BRIGHT DNA binding domain 600 697 IPR001606 GO:0003677
Cme04g01382 784 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 2 773 IPR042293 -
Cme04g01382 784 CDD PHD_ARID4_like 707 758 - -
Cme04g01382 784 SMART ARID_2 594 697 - -
Cme04g01382 784 Gene3D - 594 697 IPR036431 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme01g02766 Cme04g01382 CCT
Cme01g02766 Cme04g01382 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01382 Cme-Chr4:19635342 Cme11g02426 Cme-Chr11:31072742 3.75E-06 dispersed
Cme01g02766 Cme-Chr1:34752883 Cme04g01382 Cme-Chr4:19635342 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41197 PF01388 ARID 5.70E-14 CL0123 Cme TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01382 - - csv:101215769 1508.81