Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01396 ATGGATACCGTCAAGTCCTTCAAGGGCTACGGCAAGGTCGACGAACTCGAACAACAAGCTTTCCGACAAAAGACTCGCCGCCGCCTTATTATAATCTCTATTTCCGTTGTTCTTCTAATTGCCCTCCTCATCGGCGCCGTCGTTGGAATCGTCCTTCATAAACGCAACTCTTCTTCTTCATCCACCACCACCTCACCTCCTCCCACCGAGCTCACTCCCCCTGCCTCACTCAAAACTCTCTGTAGTGTCACTCAGTATCCGAGTTCCTGTCAATCCTCTCTCCAAAACTCCAATACCACCGATCCGGTATTTCTCTTCAAGCTTTCTCTCCGAGTCGCCACTGATTCACTCTCGAAGCTCTCTGATTATACGTCTAATTTCAATTCCAATACTGGAGATCCGAAGGTTAAAGCTGCAATTAAAATCTGCCAGAGTGTTTTTGAAGATGCCATTGATACGTTAAACGATACCATTTCGTCTATGGAAGTGGATCGTCACAGTGAGAAGTTCTTGTCGCCTTCTAGGATTGAAGATCTGAAAACCTGGCTGAGTACTACAATCACAGATCAAGAAACCTGCCTTGACGCTCTTCGAGATCTAAACCAGACGACGGTTCTTCAGGACTTGCAAACGGCAATGGCGAACTCTACCGAGTTTACTAGCAATAGTTTAGCTATTGTAACGAAAATACTTGGGTTGTTGGCGGATTTCAACATCCCTATCCACCGGAAATTGATGGGATTACCGGAATGGGTAAGCTCTGGCGACCGAAGGCTTCTGCAGGAGAACAATGTGACGGCGCATGTGACGGTATCGAAGGATGGGAAAGGGGACTACACGACAATCAAAGATGCCGTAGCGGCGGTGCCAAAGAAGAGCAAAGAAAGATTCATCATACATGTAAAAGAAGGAATATACGAAGAGAATGTGATTCTGGACAAGAGCAAGTGGAATGTTATGATGTATGGAGATGGCAGAACAAAAACCATTGTTTCCGGCCACCTGAACTTCATCGATGGCACTCCCACCTTCTCCACCGCCACTTTTGCTGTTGCTGGCAAAGGGTTCATTGGGAAGGACATGGGGTTCATCAACACGGCCGGTCCAGCCAAGCACCAGGCCGTTGCCTTCCGGTCCGGCTCCGACCTCTCTGTGATGTCTGGATGTTCATTTGATGGCTATCAAGACACTCTCTACGCCCACTCAAACCGTCAATTCTACCGAGACTGCGATATCACCGGTACCATCGACTTCATCTTCGGCAACGCCGCGGTGGTGTTCCAGAACTGCAACATCCGGCCGAGGCAGCCACTTCCCAACCAATTTAACACCATCACAGCCCAAGGTAAGAAGGACATCAACCAAAACTCCGGCATTTCGATTCAGAAATGCACTTTTTCGGCCTACAATAACAGTCTCAGCGCCCCCACTTATTTGGGGCGGCCATGGAAGGAGTTTTCGACGACGGTGATTATGCAGTCGGAGATTGGAGGATTCCTGAATCCGGTTGGGTGGAAGGAATGGGTGAGCGGGCAGGACCCACCCAGCAGCATATTTTATGGTGAGTATCAGAATAGTGGGCCAGGATCAAACGTGGACAAGAGGGTCAGATGGGCCGGTTACAAGCCCAGTCTTACGGATTCCGAGGCCGGAAAGTTCACCGTTGGGACCTTCCTGAACGGCGAGGATTGGTTGCCGGCTACCAATGTAAACTTTGATACAACTTTGTAA 1731 49.16 MDTVKSFKGYGKVDELEQQAFRQKTRRRLIIISISVVLLIALLIGAVVGIVLHKRNSSSSSTTTSPPPTELTPPASLKTLCSVTQYPSSCQSSLQNSNTTDPVFLFKLSLRVATDSLSKLSDYTSNFNSNTGDPKVKAAIKICQSVFEDAIDTLNDTISSMEVDRHSEKFLSPSRIEDLKTWLSTTITDQETCLDALRDLNQTTVLQDLQTAMANSTEFTSNSLAIVTKILGLLADFNIPIHRKLMGLPEWVSSGDRRLLQENNVTAHVTVSKDGKGDYTTIKDAVAAVPKKSKERFIIHVKEGIYEENVILDKSKWNVMMYGDGRTKTIVSGHLNFIDGTPTFSTATFAVAGKGFIGKDMGFINTAGPAKHQAVAFRSGSDLSVMSGCSFDGYQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCNIRPRQPLPNQFNTITAQGKKDINQNSGISIQKCTFSAYNNSLSAPTYLGRPWKEFSTTVIMQSEIGGFLNPVGWKEWVSGQDPPSSIFYGEYQNSGPGSNVDKRVRWAGYKPSLTDSEAGKFTVGTFLNGEDWLPATNVNFDTTL 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19793938 19796574 - MELO3C022701.2.1 Cme04g01396 325657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01396 576 PANTHER PECTINESTERASE 1-RELATED 8 573 - -
Cme04g01396 576 CDD PMEI-like_3 79 230 - -
Cme04g01396 576 Pfam Plant invertase/pectin methylesterase inhibitor 77 226 IPR006501 GO:0004857
Cme04g01396 576 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 231 IPR035513 -
Cme04g01396 576 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 231 IPR035513 -
Cme04g01396 576 SMART PMEI_2 72 226 IPR006501 GO:0004857
Cme04g01396 576 TIGRFAM PME_inhib: pectinesterase inhibitor domain 62 230 IPR006501 GO:0004857
Cme04g01396 576 SUPERFAMILY Pectin lyase-like 266 574 IPR011050 -
Cme04g01396 576 Pfam Pectinesterase 268 561 IPR000070 GO:0030599|GO:0042545
Cme04g01396 576 ProSitePatterns Pectinesterase signature 2. 412 421 IPR033131 -
Cme04g01396 576 Gene3D - 262 576 IPR012334 -
Cme04g01396 576 PANTHER PECTINESTERASE 8 573 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01396 Cme-Chr4:19793938 Cme10g01634 Cme-Chr10:22079261 1.49E-140 dispersed
Cme12g01093 Cme-Chr12:18847758 Cme04g01396 Cme-Chr4:19793938 4.86E-169 transposed
Cme12g02011 Cme-Chr12:25724146 Cme04g01396 Cme-Chr4:19793938 1.22E-35 transposed
Cme01g02759 Cme-Chr1:34704512 Cme04g01396 Cme-Chr4:19793938 2.29E-135 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01396 - - csv:101207508 1092.41