Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01402 ATGTCAAAACCCGACGAAACCCTCGCCGCCGGAGTTCCATTCTCCTGCAACTCCAAAACCAACCTCTTGGTCTTCGCCCTCTCAACTACTCTTCTCCTCGCAGCCGTCTCCTCCGACGACCACGTGAGAAGCAAGTGCGCCATGACGCTCTACCCCGAGCTTTGCGAGACGACGATATCCACCGCCGTGGGAAGTAGTTCAAAAGAGGCAATCGAAGCGTCGGTGAACATTACGATTGGTGCAGTGGGGGATAATTATAGAAGGGTGAAGAAATTGCTTAAGACAGAGAATAGTCTGACGAAACGAGAGAAGATTGCACTTCATGACTGTTTGGAAACAGGGGAAGAGACGCTGAGAGAGCTTTATGAAGTTGTTGAAGATGTTAATGAGTATCCTAATAAGAAATCTCTCTCACGCTATGCTGATGACCTCAAAACTTTACTCAGTTCCGCCATTACTAATCAGGAGACATGCTTGGACGGATTCTCACACGATAAAGCTGATAAAAAAGTACGAGAGTCATTAAAAGAAGGCCTTATTCACATCGAAAAGCTCTGCAGCATTGCTTTAGCCTTGATTAAGAATCTTACTGACACCGACATTGCCAATCTCAACAATAACAATAACCATCTCAGCCGAAAGCAATTGAAGGAAAAGAACACCGACGATAGAATTAATTGGCCAGATTGGATGTCACCCAACGATCGAAGGCTTTTGCAAGCCTCATCTACAGCCACTCCTGACGTGGTAGTAGCAGCCGACGGGAGTGGCGATTTTCGGACAATTTCTGAAGCAGTTGCGGCAGCACCTAGTAGAAGTAGTCAAAGGTATATAATAAGAATAAAGGCAGGTGTTTATAGAGAGAATGTGAATGTGGCAAGTAGTAAGAGGAATATAATGTTTTGGGGAGATGGAAGGGTTAACACTATAATCACCGGGAATAGAAATGTGGTCGATGGAAGCACTACATTCAACTCCGCAACCGTTGCGGCGGTGGGAGAAAGGTTCTTGGCGAGAGACGTTACATTTCAGAACACCGCCGGTCCATCAAAGCACCAAGCGGTGGCTCTCCGTGTTGGCTCCGACCTCTCTGCTTTTTACCGCTGCGACATGCTCGCCTATCAAGACACACTCTACGTCCACTCCAACCGCCAATTCTACGTCCAGTGCATCATCGTCGGCACCATCGACTTCATCTTCGGCAATGCCGCTGCCGTCATCCAAGACTGCGACATCCACGCCCGCCGCCCCAATCCCGGCCAGAGGAACATGGTCACTGCACAAGGAAGAACAGACCCAAATCAGAACACTGGGATTGTCATTCAGAAATGCCGAATCGGAACCACCTCCGATTTGCGGCCGGTGATCAGCAATTTCCCAACGTTTCTGGGGCGGCCGTGGCAGAGATACTCGAGAACGGTGGTTATGCAGACGAGTATTAGCAATGTGATTGATCCGGCGGGGTGGCATGTTTGGGATGGGAATTTTGCGCTTGATACTCTGTTTTATGCAGAGTATCAGAATAGTGGTGCCGGTGCCGATACGTCGAGGAGAGTGAGGTGGAAGGGGTTTAGGGTTCTTACCAGGGCGGCGGAAGCGGAGGCCTTCACGGCGGGGAATTTCATCGGCGGCGGCACCTGGCTGAGCTCCACAGGATTCCCATTTTCACTTGGCTTGTAA 1680 49.58 MSKPDETLAAGVPFSCNSKTNLLVFALSTTLLLAAVSSDDHVRSKCAMTLYPELCETTISTAVGSSSKEAIEASVNITIGAVGDNYRRVKKLLKTENSLTKREKIALHDCLETGEETLRELYEVVEDVNEYPNKKSLSRYADDLKTLLSSAITNQETCLDGFSHDKADKKVRESLKEGLIHIEKLCSIALALIKNLTDTDIANLNNNNNHLSRKQLKEKNTDDRINWPDWMSPNDRRLLQASSTATPDVVVAADGSGDFRTISEAVAAAPSRSSQRYIIRIKAGVYRENVNVASSKRNIMFWGDGRVNTIITGNRNVVDGSTTFNSATVAAVGERFLARDVTFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSNRQFYVQCIIVGTIDFIFGNAAAVIQDCDIHARRPNPGQRNMVTAQGRTDPNQNTGIVIQKCRIGTTSDLRPVISNFPTFLGRPWQRYSRTVVMQTSISNVIDPAGWHVWDGNFALDTLFYAEYQNSGAGADTSRRVRWKGFRVLTRAAEAEAFTAGNFIGGGTWLSSTGFPFSLGL 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19874958 19880114 - MELO3C022704.2.1 Cme04g01402 325663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01402 559 Pfam Plant invertase/pectin methylesterase inhibitor 42 192 IPR006501 GO:0004857
Cme04g01402 559 ProSitePatterns Pectinesterase signature 2. 392 401 IPR033131 -
Cme04g01402 559 TIGRFAM PME_inhib: pectinesterase inhibitor domain 21 197 IPR006501 GO:0004857
Cme04g01402 559 Gene3D - 242 559 IPR012334 -
Cme04g01402 559 PANTHER PECTINESTERASE 38 558 - -
Cme04g01402 559 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 197 IPR035513 -
Cme04g01402 559 PANTHER PECTINESTERASE 38 558 - -
Cme04g01402 559 Pfam Pectinesterase 248 544 IPR000070 GO:0030599|GO:0042545
Cme04g01402 559 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 198 IPR035513 -
Cme04g01402 559 ProSitePatterns Pectinesterase signature 1. 273 292 IPR018040 -
Cme04g01402 559 CDD PMEI-like_3 46 197 - -
Cme04g01402 559 SUPERFAMILY Pectin lyase-like 242 558 IPR011050 -
Cme04g01402 559 SMART PMEI_2 37 192 IPR006501 GO:0004857
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme01g02759 Cme04g01402 CCT
Cme01g02759 Cme04g01402 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01812 Cme-Chr1:25634983 Cme04g01402 Cme-Chr4:19874958 0 dispersed
Cme01g01813 Cme-Chr1:25634983 Cme04g01402 Cme-Chr4:19874958 0 dispersed
Cme04g01402 Cme-Chr4:19874958 Cme06g00898 Cme-Chr6:6304129 1.05E-152 dispersed
Cme04g01402 Cme-Chr4:19874958 Cme01g02759 Cme-Chr1:34704512 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01402 K01051 - csv:101207996 1024.23