Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01429 ATGGCCAAAACAGGTGTCTTTGATTCTGATCCTACTGTTATCGGCAAAGCCACTGAGTTGAAGAAAGAGTTACAAACACTCATTCTTGCTATCATTGATGACGACAATTACTCCACCGACACCATCGATAACGCTAAAGACATCCTTTCTGCTCTCAAGGAACTGAAACTCAGGAAGAGATCCCGTTCTTCTTCTAATCTTTTCCACAATCTCATTTCTCCCCAAGAATTTCGTTGTCCTCTTTCTAGAGAACTCATGAGAGATCCTGTCATTCTCTCCACTGGCGAGACATATGACAGACCCTTCATTCAGAAATGGTTAAATTCAGGGAACAGGACTTGCCCTAGAACTCAACAAGTTCTTTCGCACACCGATCTCACTCCCAATCACTTGATTCGTGAAATGATCTCTCAGTGGTGTGCAACTCGGGGAATTGAGTTGCAAGATCGTGTCCGTGTTCATTATCTTGATGACGATGTCATAACAGAGGCTGATCGAGACCGTTTTCTCATGTTACTTGAGAAAATGTCTATGACAATATCTGAACAGAAAGAAGCTGCAAAGGAGCTACGAATGTTGACGAAGCGAATGCCTTCATTTCGAGCACTTTTTGGTGAGTCCCTTGATGCCATATCTTTGTTGCTTAGTCCACTTAGTGGAGATAAGTCACAAAGTAATAGTAATATTCACACGGATCTGCAAGAAGATGTGATCACAACCCTCTTGAATTTGTCGATCCATGACAACAACAAGAAGCTTGTTGCTGAAACACCCTATGCAATACCTCTTCTAATGGAAGCGTTAAGATCAGGAACCATGGAAACAAGGAGCAATGCAGCTGCAGCCCTATTTACTCTATCTGCTCTCGACCCAAACAAAGCAATCATTGGGAAAGCTGGTGCCTTGAAACCACTTATCGAGCTTTTGGACTTGGGGCATCCATTATCAATCAAAGACGCTGCTTCAGCAATATTCAATCTTTGTATACTTCATGAAAACAAAGCAAGAGCCGTGCGTGATGGTGCAGTTCGAGTGCTTCTGAAAAAGATCATGAGCCAGATGCATGTTGATGAGTTGTTGGCTATTCTTGCAATGCTATCATGCCATCAAAGAGCTATTGAAGAAATTGGAGAACTAGGAGCTGTCCCGTTCTTACTCAGAATTATCAGGGAAAGTTCTTGTTCACGTAATAAGGAAAATTGCATTGTGATCATCCATTCTGTCTGCTTATACGATCGAACCAAATGGAAGGAAATGAGGGAAGAAGAGAAATGCTATCGAACCATCTCTGAACTTGCTCAGAATGGGACTTCAAGGGCAAAGAGAAAAGCCAGTGGCGTACTTGAAAGAATAAACAGGGTAGTTAATATGACCCATACCGCCTAA 1386 42.28 MAKTGVFDSDPTVIGKATELKKELQTLILAIIDDDNYSTDTIDNAKDILSALKELKLRKRSRSSSNLFHNLISPQEFRCPLSRELMRDPVILSTGETYDRPFIQKWLNSGNRTCPRTQQVLSHTDLTPNHLIREMISQWCATRGIELQDRVRVHYLDDDVITEADRDRFLMLLEKMSMTISEQKEAAKELRMLTKRMPSFRALFGESLDAISLLLSPLSGDKSQSNSNIHTDLQEDVITTLLNLSIHDNNKKLVAETPYAIPLLMEALRSGTMETRSNAAAALFTLSALDPNKAIIGKAGALKPLIELLDLGHPLSIKDAASAIFNLCILHENKARAVRDGAVRVLLKKIMSQMHVDELLAILAMLSCHQRAIEEIGELGAVPFLLRIIRESSCSRNKENCIVIIHSVCLYDRTKWKEMREEEKCYRTISELAQNGTSRAKRKASGVLERINRVVNMTHTA 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20321918 20324332 - MELO3C022726.2.1 Cme04g01429 325690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01429 461 Pfam U-box domain 74 143 IPR003613 GO:0004842|GO:0016567
Cme04g01429 461 CDD RING-Ubox_PUB 77 119 IPR045210 -
Cme04g01429 461 SUPERFAMILY ARM repeat 182 451 IPR016024 -
Cme04g01429 461 SMART arm_5 247 288 IPR000225 GO:0005515
Cme04g01429 461 SMART arm_5 289 329 IPR000225 GO:0005515
Cme04g01429 461 SMART arm_5 368 410 IPR000225 GO:0005515
Cme04g01429 461 SUPERFAMILY RING/U-box 74 149 - -
Cme04g01429 461 PANTHER U BOX DOMAIN-CONTAINING 5 459 - -
Cme04g01429 461 Gene3D - 164 293 IPR011989 -
Cme04g01429 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 146 IPR013083 -
Cme04g01429 461 Pfam Armadillo/beta-catenin-like repeat 290 328 IPR000225 GO:0005515
Cme04g01429 461 ProSiteProfiles U-box domain profile. 72 146 IPR003613 GO:0004842|GO:0016567
Cme04g01429 461 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 5 459 - -
Cme04g01429 461 SMART Ubox_2 76 139 IPR003613 GO:0004842|GO:0016567
Cme04g01429 461 Gene3D - 294 455 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01429 Cme-Chr4:20321918 Cme05g01074 Cme-Chr5:16603013 4.21E-119 dispersed
Cme04g01429 Cme-Chr4:20321918 Cme11g01284 Cme-Chr11:19590109 5.39E-88 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01429 - - csv:101215688 858.981