Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01449 ATGTCCCTCCTTAGTAGATTCTTTTACCGAAGACCTCCAGATGGGTTGCTGGAATTTGTTGAACGAGTCTATATTTTTGATTCGTGTTTTTCGACTGAAGCTTTGCCTGATGGTATGTACCAAATATATCTGCATGAAATCATTAATGAATTACATGAAGAATTCCCGGACTCTTCCTTCCTTGCGTTTAATTTTCGTGAAGGGGAGAAAAGGAGCCAATTTGCAGAAATGTTGTGTGCGTATGACGTCACTGTCATGGATTATCCTCGACAATACGAAGGTTGTCCTCTTCTTCCACTGTCGTTGATTCAGCACTTCCTCCGTGTTTGTGAAAGTTGGCTTCTGCTTGGTAACCAACAAAATGTTATTCTTCTTCACTGTGAGAGAGGAGGTTGGCCTCTTTTGGCATTCCTTTTGGCTAGCTTTTTGATTTTTAGAAAAATGCACAGTGGTGAGAGGAAAACTCTTGAAATTGTACATCGGGAAGCTCCGAAAGGGTTTTTGCAGCTCTTGTCCCCACTAAATCCATTTCCATCTCAGCTCCGCTACTTGCAATATGTAGCAAGGAGAAATATAGTCTCCGAGTGGCCACCACCTGAGCGAGCACTCTCTTTAGATTGTGTAATTCTTCGTGGCGTTCCAGGTTTTGATGCTCAGAATGGCTGCAGACCAGTCATTCGTATTTTTGGGAGAAATCTTTTTAGTAAGGGTGGGCTTTCCACGCAGATGCTTTTCTCCATGCCCAAGAAGAACAAGGCCCTCCGTCACTACCATCAGGCAGACTGTGATGTGATTAAAATAGACGTGCAGTGTTTGGTTCAAGGAGATGTAGTGTTGGAGTGTTCACATTTGGAATCGGAACCAGAAAGAGAAGTTATGATGTTTCGTATTATGTTCAATACAGCATTTATTAGATCAAACATACTGATGCTAACCTCTGAAAATTTGGATATTCTTTGGGATTCAAAGGACCGTTATCCAAAAGGCTTTCGAGCTGAGGTTTTGTTTGGGGAGATGGAAAACATCTCCCCTCCGAGGGCTCCAACCTCCATTTTGAATGGTGAAGAGAAAGGTGGATTGCCAATTGAAGCTTTTTCCAGGGTTCAAGAACTTTTTAGTGGTGTCGAGTGGATTGATAACAACGATGATGCTGCCTTGTGGCTACTTAAGAATCTTTCTGCCTTGAGTGATGTGAAAGAATTGTCAAGATTGCAAAATAAAACAAGTTCATACTCCTCACCAGTAGATTCTGAAGAGGAAAATAATACTTCTAGCACTGCCGATAGTTCAGATGAAGTGTTTGATATTATTACAAAGCCTTTTGTGGATCCAACTTCTACCAACTTTACAATTCCGGCCACGGTACATTCTTCTGAATTATTGTCTGAGAAGATTGTTGTCAATGAAGTGAATATTTCATCAGAGTCTCCTCAATCTTCTGATGAATTTCAAGACAAGATATTTTCAAATAAAGAACCTTTACCGACTTCATCACCTCTGTTGCCTCCATCTAATCTACTATCTACCGATGCTAGTGGGAAACTTGACTCAAATAAAATGACACCCACTGTTAAAGTGATTCCTCCACCACCACCACCACCACCACCGCTGCCACCTTTTTCTCTATCACATGATAAGCCTCAAGTAGAAACTTCCTCTAGTTTGGATTCGACCACTGTAACAATGCATGTGAGACCCCCTCCACCTCCTCCATCTCCACCGCAGTATCCTACTATTAACAATCCTGTTACAACCTCGACTCATTCACTTTCATTCGTTCCTAAATCTTCTGGTGCACCCCCACCCCCACCCCCACCCCCACCTCCTCCTTTTGTTCCAAAATCTTCTAGTGCTCCTTCACCTCCTCCTCCACCCCCAATAAAATCTTCTAGTGCTCCTCCACCACCTCCTCCTCCGCCTCTAAAATCTTCTAGTGCTCCTCCACCTCCGCCTCCACCTCCATTTCCAAAACTTTCTGGTGCTCCTCCACCTCCGCCTCCACCTCCATTTCCAAAACTTTCTGGTGCTCCTCCACCTCCGCCTCCACCTCCTTTTCCAAAACTTTCTAGTGCTCCTCCACCTCCGCCTCCACCTCCATTTCCAAAACTTTCTGGTGCTTCTCCACCTCCACCTCCTCCACAATCAAATCGTGGTGCACCAGTTCCACCTCCTCCACCACCGAAACCTCCCAGTGTTGAGCTGCCTAGTCATGGTGCTAAATCAACTAGACCTCCTCCACCTCCTCCACCAGCAAAGCCCTTCAATGCCAATTCTCTGACAAGTCAAGGTGCTACACCAATGCCACCACCTCCCCCCGGACCAAGAGGATCAAATGTACCACCACCGCCGCCACCTTCTGCTGGAAGAGGCAAAGCTGCCCTAGGATCAACAACTCAAGGAAGAGGCCGAGTTGCCACAACAGTTGTAAATGCTCCAAAAAAAACCACCTTAAAACCATTACACTGGGTGAAAGTTACTCGAGCAATGCAAGGGAGTTTATGGGCTGACTCACAAAAGCAGGAAAATCAATCGAGGGCCCCAGAAATTGACATCTCCGAACTTGAAAGTCTATTCTCAGCAGCTTCTGCTTCTGATGGAAGTGGCAGTAAAGGTGGAGGACGACGTGGTTCCAACATCAATAAACCTGAAAAAGTGCAACTGATTGACCTGCGGAGAGCATATAACTGTGAGATAATGCTCTCAAAAATAAAGATTCCCTTACCGGACATGATAAATTCAGTTCTTGCATTGGATTCTACTGCTCTCGATATTGACCAGGTTGAGAATCTCATCAAGTTTTGTCCTACTAGGGAAGAGATGGAAACGTTGAAGGGTTATACAGGTGACAGAGAAATGCTTGGAAAGTGTGAGCTGTTTTTTCTCGAGCTATTGAAGGTCCCACGAATAGAGCCCAAGTTACGAGTATTTGCTTTCAAAATCACCTTTTCTAGTCAGGTGAATGATTTAAGATATCATTTGAGCACAATAAATGATGCTACAAGAGAGGTCAAAGAATCTGCAAAATTGCGTCAGATAATGCAAACTATTCTTACACTGGGAAATGCGTTAAACCAGGGTACTGCACGAGGCTCCGCTATAGGTTTTAAGTTAGACAGCCTCCTTAAATTGTCTGACACTCGGGCAAGAAACAACAAAATGACTTTGATGCATTATCTATGTAAGCTCATTGCAGAGAAAATGCCAGAGTTACTTGATTTTGACAAGGACCTTGTTCATCTAGAAGCTGCCTCTAAGATTCAATTGAAAGCATTGGCTGAGGAAATGCAAGCAGTAAGTAAAGGTCTTGAAAAAGTGGAGCAAGAGCTAACTGCCTCAGAAAACGATGGTGCGATCTCTGTTGGTTTCCAAAAGGTGCTGAAGAATTTTCTTGATACGGCTGAAGCTGAAGTAAGGGCACTTATCTCCTTATATTCTGAAGTGGGGAGAAATGCGGATTCTCTATCACAGTACTTTGGCGAGGATCCAGCTCGGTGCCCTTTTGAGCAAGTGACTCAAATTTTGATAGTCTTCGTTAAGATGTTCAAGAAGTCACGAGAAGAAAATGAAAGGCAGGCTGATGCTGAAAAGAAAAAAATAGAAAAGGAAGCCATGAAAGAAAGAAGTTCAGTTAAAGCGAAGTGA 3642 43.74 MSLLSRFFYRRPPDGLLEFVERVYIFDSCFSTEALPDGMYQIYLHEIINELHEEFPDSSFLAFNFREGEKRSQFAEMLCAYDVTVMDYPRQYEGCPLLPLSLIQHFLRVCESWLLLGNQQNVILLHCERGGWPLLAFLLASFLIFRKMHSGERKTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVARRNIVSEWPPPERALSLDCVILRGVPGFDAQNGCRPVIRIFGRNLFSKGGLSTQMLFSMPKKNKALRHYHQADCDVIKIDVQCLVQGDVVLECSHLESEPEREVMMFRIMFNTAFIRSNILMLTSENLDILWDSKDRYPKGFRAEVLFGEMENISPPRAPTSILNGEEKGGLPIEAFSRVQELFSGVEWIDNNDDAALWLLKNLSALSDVKELSRLQNKTSSYSSPVDSEEENNTSSTADSSDEVFDIITKPFVDPTSTNFTIPATVHSSELLSEKIVVNEVNISSESPQSSDEFQDKIFSNKEPLPTSSPLLPPSNLLSTDASGKLDSNKMTPTVKVIPPPPPPPPPLPPFSLSHDKPQVETSSSLDSTTVTMHVRPPPPPPSPPQYPTINNPVTTSTHSLSFVPKSSGAPPPPPPPPPPPFVPKSSSAPSPPPPPPIKSSSAPPPPPPPPLKSSSAPPPPPPPPFPKLSGAPPPPPPPPFPKLSGAPPPPPPPPFPKLSSAPPPPPPPPFPKLSGASPPPPPPQSNRGAPVPPPPPPKPPSVELPSHGAKSTRPPPPPPPAKPFNANSLTSQGATPMPPPPPGPRGSNVPPPPPPSAGRGKAALGSTTQGRGRVATTVVNAPKKTTLKPLHWVKVTRAMQGSLWADSQKQENQSRAPEIDISELESLFSAASASDGSGSKGGGRRGSNINKPEKVQLIDLRRAYNCEIMLSKIKIPLPDMINSVLALDSTALDIDQVENLIKFCPTREEMETLKGYTGDREMLGKCELFFLELLKVPRIEPKLRVFAFKITFSSQVNDLRYHLSTINDATREVKESAKLRQIMQTILTLGNALNQGTARGSAIGFKLDSLLKLSDTRARNNKMTLMHYLCKLIAEKMPELLDFDKDLVHLEAASKIQLKALAEEMQAVSKGLEKVEQELTASENDGAISVGFQKVLKNFLDTAEAEVRALISLYSEVGRNADSLSQYFGEDPARCPFEQVTQILIVFVKMFKKSREENERQADAEKKKIEKEAMKERSSVKAK 1213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20598444 20608631 - MELO3C022751.2.1 Cme04g01449 325710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01449 1213 MobiDBLite consensus disorder prediction 489 519 - -
Cme04g01449 1213 Pfam C2 domain of PTEN tumour-suppressor protein 199 337 IPR014020 -
Cme04g01449 1213 MobiDBLite consensus disorder prediction 596 733 - -
Cme04g01449 1213 ProSiteProfiles Formin homology-2 (FH2) domain profile. 807 1207 IPR015425 -
Cme04g01449 1213 MobiDBLite consensus disorder prediction 860 874 - -
Cme04g01449 1213 MobiDBLite consensus disorder prediction 764 788 - -
Cme04g01449 1213 Gene3D Protein tyrosine phosphatase superfamily 16 191 IPR029021 -
Cme04g01449 1213 MobiDBLite consensus disorder prediction 545 561 - -
Cme04g01449 1213 MobiDBLite consensus disorder prediction 740 754 - -
Cme04g01449 1213 Pfam Formin Homology 2 Domain 812 1182 IPR015425 -
Cme04g01449 1213 MobiDBLite consensus disorder prediction 563 578 - -
Cme04g01449 1213 MobiDBLite consensus disorder prediction 579 594 - -
Cme04g01449 1213 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Cme04g01449 1213 SMART it6_source 527 1213 IPR015425 -
Cme04g01449 1213 Gene3D - 197 342 - -
Cme04g01449 1213 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 339 IPR035892 -
Cme04g01449 1213 MobiDBLite consensus disorder prediction 489 812 - -
Cme04g01449 1213 PANTHER FORMIN-J 1 627 - -
Cme04g01449 1213 PANTHER FORMIN-J 626 1209 - -
Cme04g01449 1213 SUPERFAMILY Formin homology 2 domain (FH2 domain) 882 1207 - -
Cme04g01449 1213 MobiDBLite consensus disorder prediction 406 430 - -
Cme04g01449 1213 Gene3D Formin, FH2 domain 805 1193 IPR042201 -
Cme04g01449 1213 MobiDBLite consensus disorder prediction 524 542 - -
Cme04g01449 1213 Coils Coil 1088 1115 - -
Cme04g01449 1213 SMART PTEN_C2_2 198 338 IPR014020 -
Cme04g01449 1213 Coils Coil 1182 1213 - -
Cme04g01449 1213 MobiDBLite consensus disorder prediction 1184 1213 - -
Cme04g01449 1213 MobiDBLite consensus disorder prediction 860 880 - -
Cme04g01449 1213 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 19 187 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01449 Cme-Chr4:20598444 Cme12g01971 Cme-Chr12:25543931 1.56E-119 dispersed
Cme04g01449 Cme-Chr4:20598444 Cme02g01069 Cme-Chr2:15699961 2.65E-177 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01449 - - csv:101217517 1103.97