Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01449 ATGTCCCTCCTTAGTAGATTCTTTTACCGAAGACCTCCAGATGGGTTGCTGGAATTTGTTGAACGAGTCTATATTTTTGATTCGTGTTTTTCGACTGAAGCTTTGCCTGATGGTATGTACCAAATATATCTGCATGAAATCATTAATGAATTACATGAAGAATTCCCGGACTCTTCCTTCCTTGCGTTTAATTTTCGTGAAGGGGAGAAAAGGAGCCAATTTGCAGAAATGTTGTGTGCGTATGACGTCACTGTCATGGATTATCCTCGACAATACGAAGGTTGTCCTCTTCTTCCACTGTCGTTGATTCAGCACTTCCTCCGTGTTTGTGAAAGTTGGCTTCTGCTTGGTAACCAACAAAATGTTATTCTTCTTCACTGTGAGAGAGGAGGTTGGCCTCTTTTGGCATTCCTTTTGGCTAGCTTTTTGATTTTTAGAAAAATGCACAGTGGTGAGAGGAAAACTCTTGAAATTGTACATCGGGAAGCTCCGAAAGGGTTTTTGCAGCTCTTGTCCCCACTAAATCCATTTCCATCTCAGCTCCGCTACTTGCAATATGTAGCAAGGAGAAATATAGTCTCCGAGTGGCCACCACCTGAGCGAGCACTCTCTTTAGATTGTGTAATTCTTCGTGGCGTTCCAGGTTTTGATGCTCAGAATGGCTGCAGACCAGTCATTCGTATTTTTGGGAGAAATCTTTTTAGTAAGGGTGGGCTTTCCACGCAGATGCTTTTCTCCATGCCCAAGAAGAACAAGGCCCTCCGTCACTACCATCAGGCAGACTGTGATGTGATTAAAATAGACGTGCAGTGTTTGGTTCAAGGAGATGTAGTGTTGGAGTGTTCACATTTGGAATCGGAACCAGAAAGAGAAGTTATGATGTTTCGTATTATGTTCAATACAGCATTTATTAGATCAAACATACTGATGCTAACCTCTGAAAATTTGGATATTCTTTGGGATTCAAAGGACCGTTATCCAAAAGGCTTTCGAGCTGAGGTTTTGTTTGGGGAGATGGAAAACATCTCCCCTCCGAGGGCTCCAACCTCCATTTTGAATGGTGAAGAGAAAGGTGGATTGCCAATTGAAGCTTTTTCCAGGGTTCAAGAACTTTTTAGTGGTGTCGAGTGGATTGATAACAACGATGATGCTGCCTTGTGGCTACTTAAGAATCTTTCTGCCTTGAGTGATGTGAAAGAATTGTCAAGATTGCAAAATAAAACAAGTTCATACTCCTCACCAGTAGATTCTGAAGAGGAAAATAATACTTCTAGCACTGCCGATAGTTCAGATGAAGTGTTTGATATTATTACAAAGCCTTTTGTGGATCCAACTTCTACCAACTTTACAATTCCGGCCACGGTACATTCTTCTGAATTATTGTCTGAGAAGATTGTTGTCAATGAAGTGAATATTTCATCAGAGTCTCCTCAATCTTCTGATGAATTTCAAGACAAGATATTTTCAAATAAAGAACCTTTACCGACTTCATCACCTCTGTTGCCTCCATCTAATCTACTATCTACCGATGCTAGTGGGAAACTTGACTCAAATAAAATGACACCCACTGTTAAAGTGATTCCTCCACCACCACCACCACCACCACCGCTGCCACCTTTTTCTCTATCACATGATAAGCCTCAAGTAGAAACTTCCTCTAGTTTGGATTCGACCACTGTAACAATGCATGTGAGACCCCCTCCACCTCCTCCATCTCCACCGCAGTATCCTACTATTAACAATCCTGTTACAACCTCGACTCATTCACTTTCATTCGTTCCTAAATCTTCTGGTGCACCCCCACCCCCACCCCCACCCCCACCTCCTCCTTTTGTTCCAAAATCTTCTAGTGCTCCTTCACCTCCTCCTCCACCCCCAATAAAATCTTCTAGTGCTCCTCCACCACCTCCTCCTCCGCCTCTAAAATCTTCTAGTGCTCCTCCACCTCCGCCTCCACCTCCATTTCCAAAACTTTCTGGTGCTCCTCCACCTCCGCCTCCACCTCCATTTCCAAAACTTTCTGGTGCTCCTCCACCTCCGCCTCCACCTCCTTTTCCAAAACTTTCTAGTGCTCCTCCACCTCCGCCTCCACCTCCATTTCCAAAACTTTCTGGTGCTTCTCCACCTCCACCTCCTCCACAATCAAATCGTGGTGCACCAGTTCCACCTCCTCCACCACCGAAACCTCCCAGTGTTGAGCTGCCTAGTCATGGTGCTAAATCAACTAGACCTCCTCCACCTCCTCCACCAGCAAAGCCCTTCAATGCCAATTCTCTGACAAGTCAAGGTGCTACACCAATGCCACCACCTCCCCCCGGACCAAGAGGATCAAATGTACCACCACCGCCGCCACCTTCTGCTGGAAGAGGCAAAGCTGCCCTAGGATCAACAACTCAAGGAAGAGGCCGAGTTGCCACAACAGTTGTAAATGCTCCAAAAAAAACCACCTTAAAACCATTACACTGGGTGAAAGTTACTCGAGCAATGCAAGGGAGTTTATGGGCTGACTCACAAAAGCAGGAAAATCAATCGAGGGCCCCAGAAATTGACATCTCCGAACTTGAAAGTCTATTCTCAGCAGCTTCTGCTTCTGATGGAAGTGGCAGTAAAGGTGGAGGACGACGTGGTTCCAACATCAATAAACCTGAAAAAGTGCAACTGATTGACCTGCGGAGAGCATATAACTGTGAGATAATGCTCTCAAAAATAAAGATTCCCTTACCGGACATGATAAATTCAGTTCTTGCATTGGATTCTACTGCTCTCGATATTGACCAGGTTGAGAATCTCATCAAGTTTTGTCCTACTAGGGAAGAGATGGAAACGTTGAAGGGTTATACAGGTGACAGAGAAATGCTTGGAAAGTGTGAGCTGTTTTTTCTCGAGCTATTGAAGGTCCCACGAATAGAGCCCAAGTTACGAGTATTTGCTTTCAAAATCACCTTTTCTAGTCAGGTGAATGATTTAAGATATCATTTGAGCACAATAAATGATGCTACAAGAGAGGTCAAAGAATCTGCAAAATTGCGTCAGATAATGCAAACTATTCTTACACTGGGAAATGCGTTAAACCAGGGTACTGCACGAGGCTCCGCTATAGGTTTTAAGTTAGACAGCCTCCTTAAATTGTCTGACACTCGGGCAAGAAACAACAAAATGACTTTGATGCATTATCTATGTAAGCTCATTGCAGAGAAAATGCCAGAGTTACTTGATTTTGACAAGGACCTTGTTCATCTAGAAGCTGCCTCTAAGATTCAATTGAAAGCATTGGCTGAGGAAATGCAAGCAGTAAGTAAAGGTCTTGAAAAAGTGGAGCAAGAGCTAACTGCCTCAGAAAACGATGGTGCGATCTCTGTTGGTTTCCAAAAGGTGCTGAAGAATTTTCTTGATACGGCTGAAGCTGAAGTAAGGGCACTTATCTCCTTATATTCTGAAGTGGGGAGAAATGCGGATTCTCTATCACAGTACTTTGGCGAGGATCCAGCTCGGTGCCCTTTTGAGCAAGTGACTCAAATTTTGATAGTCTTCGTTAAGATGTTCAAGAAGTCACGAGAAGAAAATGAAAGGCAGGCTGATGCTGAAAAGAAAAAAATAGAAAAGGAAGCCATGAAAGAAAGAAGTTCAGTTAAAGCGAAGTGA 3642 43.74 MSLLSRFFYRRPPDGLLEFVERVYIFDSCFSTEALPDGMYQIYLHEIINELHEEFPDSSFLAFNFREGEKRSQFAEMLCAYDVTVMDYPRQYEGCPLLPLSLIQHFLRVCESWLLLGNQQNVILLHCERGGWPLLAFLLASFLIFRKMHSGERKTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVARRNIVSEWPPPERALSLDCVILRGVPGFDAQNGCRPVIRIFGRNLFSKGGLSTQMLFSMPKKNKALRHYHQADCDVIKIDVQCLVQGDVVLECSHLESEPEREVMMFRIMFNTAFIRSNILMLTSENLDILWDSKDRYPKGFRAEVLFGEMENISPPRAPTSILNGEEKGGLPIEAFSRVQELFSGVEWIDNNDDAALWLLKNLSALSDVKELSRLQNKTSSYSSPVDSEEENNTSSTADSSDEVFDIITKPFVDPTSTNFTIPATVHSSELLSEKIVVNEVNISSESPQSSDEFQDKIFSNKEPLPTSSPLLPPSNLLSTDASGKLDSNKMTPTVKVIPPPPPPPPPLPPFSLSHDKPQVETSSSLDSTTVTMHVRPPPPPPSPPQYPTINNPVTTSTHSLSFVPKSSGAPPPPPPPPPPPFVPKSSSAPSPPPPPPIKSSSAPPPPPPPPLKSSSAPPPPPPPPFPKLSGAPPPPPPPPFPKLSGAPPPPPPPPFPKLSSAPPPPPPPPFPKLSGASPPPPPPQSNRGAPVPPPPPPKPPSVELPSHGAKSTRPPPPPPPAKPFNANSLTSQGATPMPPPPPGPRGSNVPPPPPPSAGRGKAALGSTTQGRGRVATTVVNAPKKTTLKPLHWVKVTRAMQGSLWADSQKQENQSRAPEIDISELESLFSAASASDGSGSKGGGRRGSNINKPEKVQLIDLRRAYNCEIMLSKIKIPLPDMINSVLALDSTALDIDQVENLIKFCPTREEMETLKGYTGDREMLGKCELFFLELLKVPRIEPKLRVFAFKITFSSQVNDLRYHLSTINDATREVKESAKLRQIMQTILTLGNALNQGTARGSAIGFKLDSLLKLSDTRARNNKMTLMHYLCKLIAEKMPELLDFDKDLVHLEAASKIQLKALAEEMQAVSKGLEKVEQELTASENDGAISVGFQKVLKNFLDTAEAEVRALISLYSEVGRNADSLSQYFGEDPARCPFEQVTQILIVFVKMFKKSREENERQADAEKKKIEKEAMKERSSVKAK 1213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20598444 20608631 - MELO3C022751.2.1 Cme04g01449 325710

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01449 1213 MobiDBLite consensus disorder prediction 489 519 - -
Cme04g01449 1213 Pfam C2 domain of PTEN tumour-suppressor protein 199 337 IPR014020 -
Cme04g01449 1213 MobiDBLite consensus disorder prediction 596 733 - -
Cme04g01449 1213 ProSiteProfiles Formin homology-2 (FH2) domain profile. 807 1207 IPR015425 -
Cme04g01449 1213 MobiDBLite consensus disorder prediction 860 874 - -
Cme04g01449 1213 MobiDBLite consensus disorder prediction 764 788 - -
Cme04g01449 1213 Gene3D Protein tyrosine phosphatase superfamily 16 191 IPR029021 -
Cme04g01449 1213 MobiDBLite consensus disorder prediction 545 561 - -
Cme04g01449 1213 MobiDBLite consensus disorder prediction 740 754 - -
Cme04g01449 1213 Pfam Formin Homology 2 Domain 812 1182 IPR015425 -
Cme04g01449 1213 MobiDBLite consensus disorder prediction 563 578 - -
Cme04g01449 1213 MobiDBLite consensus disorder prediction 579 594 - -
Cme04g01449 1213 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Cme04g01449 1213 SMART it6_source 527 1213 IPR015425 -
Cme04g01449 1213 Gene3D - 197 342 - -
Cme04g01449 1213 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 339 IPR035892 -
Cme04g01449 1213 MobiDBLite consensus disorder prediction 489 812 - -
Cme04g01449 1213 PANTHER FORMIN-J 1 627 - -
Cme04g01449 1213 PANTHER FORMIN-J 626 1209 - -
Cme04g01449 1213 SUPERFAMILY Formin homology 2 domain (FH2 domain) 882 1207 - -
Cme04g01449 1213 MobiDBLite consensus disorder prediction 406 430 - -
Cme04g01449 1213 Gene3D Formin, FH2 domain 805 1193 IPR042201 -
Cme04g01449 1213 MobiDBLite consensus disorder prediction 524 542 - -
Cme04g01449 1213 Coils Coil 1088 1115 - -
Cme04g01449 1213 SMART PTEN_C2_2 198 338 IPR014020 -
Cme04g01449 1213 Coils Coil 1182 1213 - -
Cme04g01449 1213 MobiDBLite consensus disorder prediction 1184 1213 - -
Cme04g01449 1213 MobiDBLite consensus disorder prediction 860 880 - -
Cme04g01449 1213 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 19 187 IPR029021 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01449 - - - csv:101217517 1103.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01449 Cme-Chr4:20598444 Cme12g01971 Cme-Chr12:25543931 1.56E-119 dispersed
Cme04g01449 Cme-Chr4:20598444 Cme02g01069 Cme-Chr2:15699961 2.65E-177 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme10g01384 . 220 696 FH2 protein (formin) Gene Family AT3G25500 65.2 5.9e-161 565.5
Cme11g00355 . 475 894 FH2 protein (formin) Gene Family AT3G25500 63.0 4.0e-141 499.6
Cme02g00090 . 500 893 FH2 protein (formin) Gene Family AT3G25500 51.7 4.7e-102 369.8
Cme11g00355 . 475 910 FH2 protein (formin) Gene Family AT2G43800 55.4 8.9e-126 448.4
Cme04g00799 . 445 591 FH2 protein (formin) Gene Family AT4G15200 65.5 1.2e-46 184.5
Cme11g00755 . 334 599 FH2 protein (formin) Gene Family AT4G15200 54.4 1.3e-38 157.9
Cme04g00799 . 7 953 FH2 protein (formin) Gene Family AT5G54650 50.2 4.1e-171 599.0
Cme11g00355 . 35 913 FH2 protein (formin) Gene Family AT5G67470 56.5 8.1e-228 787.3
Cme10g01384 . 258 678 FH2 protein (formin) Gene Family AT5G67470 62.3 1.4e-126 451.1
Cme02g00090 . 500 895 FH2 protein (formin) Gene Family AT5G67470 50.7 3.0e-105 380.2
Cme10g00485 . 403 890 FH2 protein (formin) Gene Family AT1G59910 52.5 6.8e-129 458.8
Cme11g00355 . 496 871 FH2 protein (formin) Gene Family AT5G48360 50.3 6.9e-90 328.9
Cme04g00799 . 451 864 FH2 protein (formin) Gene Family AT3G05470 51.2 2.0e-106 384.0
Cme11g00355 . 472 870 FH2 protein (formin) Gene Family AT3G05470 51.8 5.9e-106 382.5
Cme04g01449 . 893 1204 FH2 protein (formin) Gene Family AT1G42980 50.5 1.7e-68 256.5
Cme04g01449 . 1 1211 FH2 protein (formin) Gene Family AT1G31810 66.8 0.0e+00 1245.7
Cme07g00118 . 1 428 FH2 protein (formin) Gene Family AT1G31810 52.3 2.3e-132 470.7
Cme02g01861 CCT 1014 1335 FH2 protein (formin) Gene Family AT5G07650 75.2 4.0e-130 462.6
Cme12g01971 CCT 980 1290 FH2 protein (formin) Gene Family AT5G07650 69.5 1.6e-118 424.1
Cme02g01069 . 867 1186 FH2 protein (formin) Gene Family AT5G07650 62.0 1.9e-108 390.6
Cme04g01449 . 877 1208 FH2 protein (formin) Gene Family AT5G07650 58.4 1.2e-105 381.3
Cme02g01861 CCT 941 1328 FH2 protein (formin) Gene Family AT5G07770 69.4 3.8e-141 498.8
Cme12g01971 CCT 903 1290 FH2 protein (formin) Gene Family AT5G07770 62.7 1.8e-127 453.4
Cme02g01069 . 790 1178 FH2 protein (formin) Gene Family AT5G07770 56.7 2.7e-115 412.9
Cme04g01449 . 813 1202 FH2 protein (formin) Gene Family AT5G07770 54.7 2.0e-113 406.8
Cme02g01069 . 797 1187 FH2 protein (formin) Gene Family AT3G32400 68.4 6.6e-147 517.7
Cme02g01861 CCT 941 1335 FH2 protein (formin) Gene Family AT3G32400 65.7 1.3e-142 503.4
Cme04g01449 . 813 1207 FH2 protein (formin) Gene Family AT3G32400 65.7 2.7e-140 495.7
Cme12g01971 CCT 873 1293 FH2 protein (formin) Gene Family AT3G32400 57.6 2.3e-131 466.1
Cme07g00118 . 1 575 FH2 protein (formin) Gene Family AT2G25050 58.6 1.3e-190 664.1
Cme02g01861 CCT 942 1335 FH2 protein (formin) Gene Family AT5G07780 63.3 4.3e-124 441.8
Cme12g01971 CCT 904 1293 FH2 protein (formin) Gene Family AT5G07780 56.9 8.5e-112 401.0
Cme04g01449 . 814 1203 FH2 protein (formin) Gene Family AT5G07780 51.7 3.3e-100 362.5
Cme02g01069 . 797 1178 FH2 protein (formin) Gene Family AT5G07780 53.3 4.4e-100 362.1
Cme02g01861 CCT 1 1344 FH2 protein (formin) Gene Family AT5G07740 51.2 0.0e+00 1154.8
Cme07g00118 . 1 403 FH2 protein (formin) Gene Family AT5G07740 62.6 1.5e-142 505.0
Cme02g01861 CCT 1013 1342 FH2 protein (formin) Gene Family AT5G07760 74.7 1.1e-128 458.0
Cme12g01971 CCT 979 1293 FH2 protein (formin) Gene Family AT5G07760 69.3 1.2e-116 417.9
Cme02g01069 . 866 1186 FH2 protein (formin) Gene Family AT5G07760 64.4 1.1e-109 394.8
Cme04g01449 . 887 1208 FH2 protein (formin) Gene Family AT5G07760 59.4 2.1e-103 374.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010762 0 1 1 0 0 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 0 1 1 3 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g01449 Cme_Chr04 FPKM 4.480392 5.487726 5.771828 5.303144 20.747263 18.53405 18.681047 8.84431 7.144527 6.826764