Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01468 ATGGAGCGGAATTACCCCTATGAGAATGGAGTGATGATGACGAGAGACCCAAAGCCAAGACTGAGATGGACTGCTGATCTTCACGACCGTTTCGTAGACGCGGTCACCAAGCTTGGTGGGCCGGAAAAAGCAACTCCCAAGTCTGTGTTAAGATTGATGGGTTTAAAGGGCTTGACTTTGTATCACTTGAAGAGCCATTTGCAGAAGTACAGACTTGGACTGCAAACACGAAAGCAAAATATGGCAGAGCAAAGGAATGAAAGCAGCGGTACTCTTAGCAATTTCTCCGGAGTAGAGGAAGATGACAGAGGGATGCAAATTGCTGAGGCTCTTAAATCACATGTTGAAGTCCAAAAAACAATACTAGAACAACTCGAGGTACAAAATAAACTGCAAATGAGAATAGAGGCTCAAGGAAAATACTTGCAAGATATCTTAGAGAATGCACAAAAGAGTCTGGCACTCGCCATTAACAGTAACCTTGGTAATCTTGAAAGCACAGAAATGCAGTTAATAAACTTTGATGCGGCTCTGTCGGATCAAATTGAAAAATTTAAGAAACAAGAAATAAGAGGAAATATAGCAAACCTAAATGATGTTTGTAAGAAGACCGCTGATTCACTCATCCAGATATGCAAAGTAGAGGCTGCAGAAGGAGACACAAACGAGTTTAATGTCGAAAAGAATATGATCAACTTTGATTTGAATTCCAAAGGTGGCTATGATTACAGTGCAAACGGGGCTGAAATACTTGAGGCCAAAACACATACCCAGCACCTAGTAGCTCTTTCTTCACATACCCAGCACCTAGTAGCTCTTTCTCCTTCCACAAAGATACAGGGGAGGCCTGGGTTTCGATCATGTGGAAGTTTGCTTACGCAAGGCAGGGGACTGCAAAACGAAAGCAAGGTGAAAAGTCAATTTTACCCTTAA 933 42.23 MERNYPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPEKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGLQTRKQNMAEQRNESSGTLSNFSGVEEDDRGMQIAEALKSHVEVQKTILEQLEVQNKLQMRIEAQGKYLQDILENAQKSLALAINSNLGNLESTEMQLINFDAALSDQIEKFKKQEIRGNIANLNDVCKKTADSLIQICKVEAAEGDTNEFNVEKNMINFDLNSKGGYDYSANGAEILEAKTHTQHLVALSSHTQHLVALSPSTKIQGRPGFRSCGSLLTQGRGLQNESKVKSQFYP 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20916450 20922122 - MELO3C022765.2.1 Cme04g01468 325729

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01468 310 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 18 72 IPR006447 GO:0003677
Cme04g01468 310 Pfam MYB-CC type transfactor, LHEQLE motif 105 152 IPR025756 -
Cme04g01468 310 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 247 IPR044848 GO:0003700
Cme04g01468 310 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 247 - -
Cme04g01468 310 MobiDBLite consensus disorder prediction 79 98 - -
Cme04g01468 310 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Cme04g01468 310 MobiDBLite consensus disorder prediction 79 96 - -
Cme04g01468 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Cme04g01468 310 Gene3D - 17 74 - -
Cme04g01468 310 SUPERFAMILY Homeodomain-like 18 75 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01468 - - - csv:101219098 480.715
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01468 Cme-Chr4:20916450 Cme11g01645 Cme-Chr11:24315395 4.74E-49 dispersed
Cme04g01468 Cme-Chr4:20916450 Cme01g01493 Cme-Chr1:19617312 3.46E-49 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme11g01645 CCT 22 220 G2-like Transcription Factor Family AT3G24120 54.4 1.1e-43 174.1
Cme01g01493 CCT 16 176 G2-like Transcription Factor Family AT3G24120 59.8 5.9e-42 168.3
Cme04g01468 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 1.0e-38 157.5
Cme08g01009 . 31 186 G2-like Transcription Factor Family AT3G24120 56.4 3.0e-38 156.0
Cme06g01406 . 298 500 G2-like Transcription Factor Family AT5G16560 54.5 1.6e-45 180.6
Cme04g00145 . 298 503 G2-like Transcription Factor Family AT5G16560 50.9 6.4e-39 158.7
Cme04g00674 CCT 1 159 G2-like Transcription Factor Family AT5G42630 59.0 4.3e-37 151.8
Cme02g01289 CCT 4 340 G2-like Transcription Factor Family AT2G03500 51.4 6.1e-80 295.0
Cme03g00787 . 20 258 G2-like Transcription Factor Family AT1G25550 55.2 1.3e-51 200.3
Cme10g00288 . 19 255 G2-like Transcription Factor Family AT1G25550 53.4 2.6e-47 186.0
Cme08g01427 . 1 301 G2-like Transcription Factor Family AT5G05090 55.7 2.5e-76 282.3
Cme04g02132 . 1 286 G2-like Transcription Factor Family AT5G05090 55.9 4.9e-72 268.1
Cme11g01645 CCT 22 220 G2-like Transcription Factor Family AT3G24120 54.4 1.1e-43 174.1
Cme01g01493 CCT 16 176 G2-like Transcription Factor Family AT3G24120 59.8 5.9e-42 168.3
Cme04g01468 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 1.0e-38 157.5
Cme08g01009 . 31 186 G2-like Transcription Factor Family AT3G24120 56.4 3.0e-38 156.0
Cme01g01493 CCT 1 379 G2-like Transcription Factor Family AT1G79430 53.1 4.0e-85 312.0
Cme11g01645 CCT 1 223 G2-like Transcription Factor Family AT1G79430 72.3 4.9e-75 278.5
Cme04g01787 . 72 273 G2-like Transcription Factor Family AT5G18240 52.7 1.2e-40 164.1
Cme08g01008 . 54 270 G2-like Transcription Factor Family AT2G01060 65.2 1.2e-53 206.8
Cme08g01427 . 1 301 G2-like Transcription Factor Family AT3G10760 63.5 6.4e-93 337.8
Cme04g02132 . 1 286 G2-like Transcription Factor Family AT3G10760 59.2 4.6e-83 305.1
Cme08g01427 . 1 203 G2-like Transcription Factor Family AT2G40970 62.1 2.3e-63 239.2
Cme04g02132 . 1 199 G2-like Transcription Factor Family AT2G40970 63.3 1.1e-57 220.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008955 1 3 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41199 PF00249 Myb_DNA-binding 3.60E-07 CL0123 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g01468 Cme_Chr04 FPKM 13.546275 16.566248 15.31087 15.360126 9.678884 7.670463 9.577791 19.090425 17.012852 18.499437