Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01468 ATGGAGCGGAATTACCCCTATGAGAATGGAGTGATGATGACGAGAGACCCAAAGCCAAGACTGAGATGGACTGCTGATCTTCACGACCGTTTCGTAGACGCGGTCACCAAGCTTGGTGGGCCGGAAAAAGCAACTCCCAAGTCTGTGTTAAGATTGATGGGTTTAAAGGGCTTGACTTTGTATCACTTGAAGAGCCATTTGCAGAAGTACAGACTTGGACTGCAAACACGAAAGCAAAATATGGCAGAGCAAAGGAATGAAAGCAGCGGTACTCTTAGCAATTTCTCCGGAGTAGAGGAAGATGACAGAGGGATGCAAATTGCTGAGGCTCTTAAATCACATGTTGAAGTCCAAAAAACAATACTAGAACAACTCGAGGTACAAAATAAACTGCAAATGAGAATAGAGGCTCAAGGAAAATACTTGCAAGATATCTTAGAGAATGCACAAAAGAGTCTGGCACTCGCCATTAACAGTAACCTTGGTAATCTTGAAAGCACAGAAATGCAGTTAATAAACTTTGATGCGGCTCTGTCGGATCAAATTGAAAAATTTAAGAAACAAGAAATAAGAGGAAATATAGCAAACCTAAATGATGTTTGTAAGAAGACCGCTGATTCACTCATCCAGATATGCAAAGTAGAGGCTGCAGAAGGAGACACAAACGAGTTTAATGTCGAAAAGAATATGATCAACTTTGATTTGAATTCCAAAGGTGGCTATGATTACAGTGCAAACGGGGCTGAAATACTTGAGGCCAAAACACATACCCAGCACCTAGTAGCTCTTTCTTCACATACCCAGCACCTAGTAGCTCTTTCTCCTTCCACAAAGATACAGGGGAGGCCTGGGTTTCGATCATGTGGAAGTTTGCTTACGCAAGGCAGGGGACTGCAAAACGAAAGCAAGGTGAAAAGTCAATTTTACCCTTAA 933 42.23 MERNYPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPEKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGLQTRKQNMAEQRNESSGTLSNFSGVEEDDRGMQIAEALKSHVEVQKTILEQLEVQNKLQMRIEAQGKYLQDILENAQKSLALAINSNLGNLESTEMQLINFDAALSDQIEKFKKQEIRGNIANLNDVCKKTADSLIQICKVEAAEGDTNEFNVEKNMINFDLNSKGGYDYSANGAEILEAKTHTQHLVALSSHTQHLVALSPSTKIQGRPGFRSCGSLLTQGRGLQNESKVKSQFYP 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20916450 20922122 - MELO3C022765.2.1 Cme04g01468 325729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01468 310 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 18 72 IPR006447 GO:0003677
Cme04g01468 310 Pfam MYB-CC type transfactor, LHEQLE motif 105 152 IPR025756 -
Cme04g01468 310 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 247 IPR044848 GO:0003700
Cme04g01468 310 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 247 - -
Cme04g01468 310 MobiDBLite consensus disorder prediction 79 98 - -
Cme04g01468 310 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Cme04g01468 310 MobiDBLite consensus disorder prediction 79 96 - -
Cme04g01468 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Cme04g01468 310 Gene3D - 17 74 - -
Cme04g01468 310 SUPERFAMILY Homeodomain-like 18 75 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01468 Cme-Chr4:20916450 Cme11g01645 Cme-Chr11:24315395 4.74E-49 dispersed
Cme04g01468 Cme-Chr4:20916450 Cme01g01493 Cme-Chr1:19617312 3.46E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41199 PF00249 Myb_DNA-binding 3.60E-07 CL0123 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01468 - - csv:101219098 480.715