Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01469 ATGAGGCCTATGGGATTTTCTTCTTTTTATGAACTTATTTCAAGTGGTTCTGATTTGATTAAAAGACCAGTGATTAGACAAGAAGATACAGCTGCTATATTGTTTTCTTCAGGTACTACTGGAGTGAGCAAAGGGGTTATGTTATCACATAGAAATTTTATATCTACCATTGAGCTTTTCGTTCGGTTTGAAGCTTCACAGTATGAATATTTGCCTACAAAGAATGTGTATCTGGCTGCTATACCAATGTTTCATATCTATGGTCTCTCCATTTTTGTGATGGGATTAATGTCATTGGGGTCTAGTGTTGTTGTAATGAGCAAATTTGATGTCAAAGATGTGGTCAAGGCCATTGATAGATTTAAGGTCACACATTTTCCAGTTGTTCCACCTATATTGATAGCTTTGTCTAGGACTGCAGAGAAAATTGGTGTGCGTAGATTTCGAAGTTTGAAACAAGTTTCTTGTGGGGCTGCTGCTTCCAGCAAGAAGACCATAGATGATTTTGTGCAGGCTCTCTCTCATGTTGACTTCATTCAGGGATATGGCATGACAGAGTCCACAGCTATAGGAACCCGTGGTTTCAATAACAAAAAGACTAGAAATTATTTGTCGGTGGGACTTTTAGCTCCAAACACAGAAGCTAAAGTCGTCGATTGGGTTACCGGATCTTCCATGCCTCCTGGTAAAACCGGCGAACTTTTGTTACGAGGACCTGGTTCAATGAAAGGGTACTTGAATAATCCAGAAGCAACAATGTCCACTATAGACCAAGAAAATTGGCTACATACTGGAGACATTGTCTACTTTGACCGAGATGGATACTTGTATGTTGTTGATCGTTTGAAGGAGGTTATAAAGTATAAAGGCTTTCAGATTGCACCTACTGATTTAGAAGCTGTAGTGATCGCACATCCTGAAGTTCTTGATACTGCAGTAGCAGCGGCCAAAGATGAAGAATGTGGTGAAATTCCAGTGGCATTTGTGGTAAAGAAGCCAGGAAGTGCACTCTCACAAAAGGATGTTGTTGATTACGTTGCTCAACAGGTTTCCCATATTTTTCAAATCTGCCCATGCATTTTTGAACATTAA 1092 39.65 MRPMGFSSFYELISSGSDLIKRPVIRQEDTAAILFSSGTTGVSKGVMLSHRNFISTIELFVRFEASQYEYLPTKNVYLAAIPMFHIYGLSIFVMGLMSLGSSVVVMSKFDVKDVVKAIDRFKVTHFPVVPPILIALSRTAEKIGVRRFRSLKQVSCGAAASSKKTIDDFVQALSHVDFIQGYGMTESTAIGTRGFNNKKTRNYLSVGLLAPNTEAKVVDWVTGSSMPPGKTGELLLRGPGSMKGYLNNPEATMSTIDQENWLHTGDIVYFDRDGYLYVVDRLKEVIKYKGFQIAPTDLEAVVIAHPEVLDTAVAAAKDEECGEIPVAFVVKKPGSALSQKDVVDYVAQQVSHIFQICPCIFEH 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20987851 21001092 + MELO3C022770.2.1 Cme04g01469 325730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01469 363 ProSitePatterns Putative AMP-binding domain signature. 33 44 IPR020845 -
Cme04g01469 363 Gene3D - 284 361 IPR045851 -
Cme04g01469 363 Gene3D - 2 283 IPR042099 -
Cme04g01469 363 Pfam AMP-binding enzyme 24 288 IPR000873 -
Cme04g01469 363 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 5 358 - -
Cme04g01469 363 Pfam AMP-binding enzyme C-terminal domain 298 353 IPR025110 -
Cme04g01469 363 SUPERFAMILY Acetyl-CoA synthetase-like 4 354 - -
Cme04g01469 363 PANTHER 4-COUMARATE--COA LIGASE-LIKE 6 5 358 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01469 Cme-Chr4:20987851 Cme07g00071 Cme-Chr7:444827 5.58E-111 dispersed
Cme04g01469 Cme-Chr4:20987851 Cme12g00392 Cme-Chr12:5642969 5.52E-94 transposed
Cme04g01469 Cme-Chr4:20987851 Cme04g02507 Cme-Chr4:31408827 4.80E-94 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01469 K01904 - csv:101219578 648.662