Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme04g01487 | ATGCAACTGGTACCAAATCATGATGAGAATAAAGATGATATTCTGGAACGTGCGCCCATTTTAAGTCAATTGGATTTTCTGCCACAATCTGTGGGGTCATCATCCTCTGCTGAGATTGCTGAGATTATAGCTATAGGGAGAGAGAGCTCTGTTAGTGATGATGATTTACACAATCTTAACATTGATGAAACTTGTCATCTGGTGAATGACCAACCACAATGTCGTATATGCCTTGACACTGGAGGAGAAGATTTAATTGCTCCATGCCATTGCAAAGGCACTCAAAAGTATGTCCATAGATCTTGTCTTGATAATTGGAGGTCCACAAAGGGTAATGGAATGTGGTATCAACTGCTATTCCAACGTAAAACTTTTACTTACCGTCATCAATCTGATACATCTGCTTTCAAGAATGATCAAGTTTTCAAGGAGGGCTTTGCTTTTGCTCATTGTACAGAATGCAGAGCTATGTTTGTGTTACGTGCAAATGTTCCTCCTGACCGCTGGTGGTTGAGACTGAAGTTTCAATTTCTTGTTGCTAGGGACCATGCGTTCATTTTCATCATTGTTCAACTGATTGTGGCATTCTTGGGGGTGTTAGTGTACAAATTTTACGGAGAGGAACTAAGGGAAATGTTTGGCTATGAAGAACACCCATACGGGTTCTATGCAATGGCTGTCTTGGCTATCATCTTGGTTGGCTTACTCTATGGTTTCTTCATAGCCATTATTTGCGGGCAGAGGATAAATGAACGCCACTACCATGTTCTCGCTAAGCAAGAACTGACAAAGGAATATATAGTTGAAGATCGAGAACATAACAAGAACGTTCCTGAATTAGACCCCAGTCATGTTAGTATTGATCTGGCGGATGTACTTTCAGTCTGGTCAAACAAAGCAAAGTTATTACTGAAAATGTTGCCAATTTGCCAGCAAGAAGAGTACTTCCAAAATCCCCTGAATTTATATCGAACGACGTGTTTGTTTCATTCTCCTTGTTTATCCAAGCGATCTGTTTGA | 1020 | 40.39 | MQLVPNHDENKDDILERAPILSQLDFLPQSVGSSSSAEIAEIIAIGRESSVSDDDLHNLNIDETCHLVNDQPQCRICLDTGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKGNGMWYQLLFQRKTFTYRHQSDTSAFKNDQVFKEGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVSIDLADVLSVWSNKAKLLLKMLPICQQEEYFQNPLNLYRTTCLFHSPCLSKRSV | 339 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 21326709 | 21329260 | + | MELO3C030624.2.1 | Cme04g01487 | 325748 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme04g01487 | 339 | PANTHER | OS02G0132300 PROTEIN | 126 | 285 | - | - | |
Cme04g01487 | 339 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 62 | 166 | IPR013083 | - | |
Cme04g01487 | 339 | PANTHER | OS02G0132300 PROTEIN | 2 | 111 | - | - | |
Cme04g01487 | 339 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 2 | 111 | - | - | |
Cme04g01487 | 339 | Pfam | RING-variant domain | 74 | 109 | IPR011016 | GO:0008270 | |
Cme04g01487 | 339 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 66 | 161 | IPR011016 | GO:0008270 | |
Cme04g01487 | 339 | SUPERFAMILY | RING/U-box | 70 | 112 | - | - | |
Cme04g01487 | 339 | CDD | RING_CH-C4HC3_MARCH | 74 | 113 | - | - | |
Cme04g01487 | 339 | SMART | ringv_2 | 73 | 113 | IPR011016 | GO:0008270 | |
Cme04g01487 | 339 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 126 | 285 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme04g01487 | Cme-Chr4:21326709 | Cme08g00802 | Cme-Chr8:5333640 | 4.02E-09 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme04g01487 | - | - | csv:101221632 | 486.108 |