Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01487 ATGCAACTGGTACCAAATCATGATGAGAATAAAGATGATATTCTGGAACGTGCGCCCATTTTAAGTCAATTGGATTTTCTGCCACAATCTGTGGGGTCATCATCCTCTGCTGAGATTGCTGAGATTATAGCTATAGGGAGAGAGAGCTCTGTTAGTGATGATGATTTACACAATCTTAACATTGATGAAACTTGTCATCTGGTGAATGACCAACCACAATGTCGTATATGCCTTGACACTGGAGGAGAAGATTTAATTGCTCCATGCCATTGCAAAGGCACTCAAAAGTATGTCCATAGATCTTGTCTTGATAATTGGAGGTCCACAAAGGGTAATGGAATGTGGTATCAACTGCTATTCCAACGTAAAACTTTTACTTACCGTCATCAATCTGATACATCTGCTTTCAAGAATGATCAAGTTTTCAAGGAGGGCTTTGCTTTTGCTCATTGTACAGAATGCAGAGCTATGTTTGTGTTACGTGCAAATGTTCCTCCTGACCGCTGGTGGTTGAGACTGAAGTTTCAATTTCTTGTTGCTAGGGACCATGCGTTCATTTTCATCATTGTTCAACTGATTGTGGCATTCTTGGGGGTGTTAGTGTACAAATTTTACGGAGAGGAACTAAGGGAAATGTTTGGCTATGAAGAACACCCATACGGGTTCTATGCAATGGCTGTCTTGGCTATCATCTTGGTTGGCTTACTCTATGGTTTCTTCATAGCCATTATTTGCGGGCAGAGGATAAATGAACGCCACTACCATGTTCTCGCTAAGCAAGAACTGACAAAGGAATATATAGTTGAAGATCGAGAACATAACAAGAACGTTCCTGAATTAGACCCCAGTCATGTTAGTATTGATCTGGCGGATGTACTTTCAGTCTGGTCAAACAAAGCAAAGTTATTACTGAAAATGTTGCCAATTTGCCAGCAAGAAGAGTACTTCCAAAATCCCCTGAATTTATATCGAACGACGTGTTTGTTTCATTCTCCTTGTTTATCCAAGCGATCTGTTTGA 1020 40.39 MQLVPNHDENKDDILERAPILSQLDFLPQSVGSSSSAEIAEIIAIGRESSVSDDDLHNLNIDETCHLVNDQPQCRICLDTGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKGNGMWYQLLFQRKTFTYRHQSDTSAFKNDQVFKEGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVSIDLADVLSVWSNKAKLLLKMLPICQQEEYFQNPLNLYRTTCLFHSPCLSKRSV 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21326709 21329260 + MELO3C030624.2.1 Cme04g01487 325748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01487 339 PANTHER OS02G0132300 PROTEIN 126 285 - -
Cme04g01487 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 166 IPR013083 -
Cme04g01487 339 PANTHER OS02G0132300 PROTEIN 2 111 - -
Cme04g01487 339 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 111 - -
Cme04g01487 339 Pfam RING-variant domain 74 109 IPR011016 GO:0008270
Cme04g01487 339 ProSiteProfiles Zinc finger RING-CH-type profile. 66 161 IPR011016 GO:0008270
Cme04g01487 339 SUPERFAMILY RING/U-box 70 112 - -
Cme04g01487 339 CDD RING_CH-C4HC3_MARCH 74 113 - -
Cme04g01487 339 SMART ringv_2 73 113 IPR011016 GO:0008270
Cme04g01487 339 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 126 285 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01487 Cme-Chr4:21326709 Cme08g00802 Cme-Chr8:5333640 4.02E-09 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01487 - - csv:101221632 486.108