Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01519 ATGGTGAAGAAGTGGAGTTGGGGAGAGCCGTTGCTGCTAGTCAGTATCTGCATTTTGGGATGGAGGATTAGTTTTATCAATGGAGCTACGGATCCAGGAGATGTATCGGCTCTAAATGCCATGTATAGTAGTTTAAACTCTCCTCCAATTCTAACACAATGGAGTTCGAGTGGTGGAGATCCATGTGGACAAATTTGGAAAGGCATTACTTGCTTGGGCTTAAGGGTCACAGAAATTTCATTGTCTGGTTTAGGACTTTCTGGAACAATGGGATATCAGCTCTCGAGTTTGACATCCCTAACTAATCTAGATGTGAGTAACAACAATCTTGGACCTGACATACCTTATCAGCTCCCTCAAAACTTGCAAAAATTAAACCTTGGATGGAATAACTTCAGTGGAAGCATCCCCTATTCTATTTCTCAAATGAGTTTGCTTATTTCCTTAAACATGAGCCACAATCAGCTTCAGAATCAAGTGAATGATATGTTCTGGAAGCTTTCTTCCCTGGCCATGTTGGACATCTCTTTCAATTTTCTGTCAGGTGCCCTCCCCCAGAGTTTTAGCAACCTTACCAGTCTTAACGCAATGTTTCTGCAAAACAACCAATTCAGTGGCACTATTGATGTTCTTGCAAATCTTCCGCTACAAAATTTGAATGTCGAGAACAACCATTTTACTGGTTGGGTTCCTGAACGATTGAAGAATATAAATATTCAGGAGGGTGGCAATTCTTGGAGCTTTGGATTTGCACCCCCACCTCCACCTGGGACTCCTCCAGCCAACCAAAATTACAGATATCACAAGGCTGGTAACAGTTACAGCCCACTGGGTAGTGATGCTGCTGGTGGAGGTAGCAATGGATCAGGAATCGGTGGTGGTGCCATTGCTGGAATTCTTATATCTGTGCTAGTCGTAGGAGCTATACTAGCATATCTTCTTGTAAAGAGAACATCCAAGAGGCCATCCACAGACGTAGAAAAGCAAAAGCATGGGAACTTGCCTATTGTATCTCCTGCTTCAAATGAAGTGCAAGATGCATTGGCAGAGATGAAGCTTGTTCATACTTCATCATCATTTGATGCAAAAGAATTGGAATCTCCTGCTTTAATCAATCTCAAACCCCCACCTATTGATCGTCATAAATCATTTGATGACAATGATACATCAAAGATACCCGTGGTGAAAAAGACCAATGTCACTGCTCCATTAAGTGTGAAATCATACTCAATAGCAGATCTGCAAATGGCTACGGGTAGTTTCAATGTAGAAAACCTTCTTGATGAGGGATCACTTGGACGTGTTTATCGGGCTCAGTTCAACGATGGGAAGGTTCTTGTAGTGAAGAAAATAGATTCAGCTGCCTTCCGTAGAGAATTGTTGGAAGATTTCACGGAGATCGTTGCTAATATATCTCAGCTGCATCATCCGAATGTAACCGAGCTAATGGGCTATTGCTCAGAGCATAGCCTGCATTTGCTAATATACGAGTTCCATAAGAATGGGTCACTACATGACTTCTTGCACATATCAGATGAATATAGCAAGCCACTGACTTGGAACTCACGTGTCAAGATTGCTTTAGGGACGGCCCGTGCTTTAGAGTACCTACATGAAGTTTGTTCCCCGTCAGTTGTTCACAGAAATATCAAGTCAGCCAATATCTTATTAGATGCCGAAATGAATCCTCATCTCTCCGATTGTGGTCTGGCTAGCTTTATAACCAATCTAGATCAGGCATTGGATCAGCAGACAGGATCTGGGTACAGTGCTCCTGAGGTTACCATGTCTGGTCAATATACATTAAAAAGCGACGTATATAGCTTTGGAGTGGTGATGTTAGAACTTCTAAGCGGACGTAAGCCATTTGATAGTTCAAGACCAAGGGCTGAGCAATCCTTGGTTCGATGGGCTACGCCTCAGCTCCATGATATTGATGCCTTGACAAAAATGGTTGATCCTGCACTGAAAGGGCTCTATCCTGTTAAGTCTCTCTCAAGATTTGCAGATGTTGTAGCTCTCTGCGTCCAGCCTGAGCCTGAATTCAGACCACCCATGTCGGAGGTGGTGGAAGCGTTGGTTCGGCTGGTGCAGAGATCCAACATGAGCAGGAGAACATTTGGAAGTGATCATGGATCATCTTTTAGAACCGATGATCTTGATGCATGCAAAACATCTTAA 2181 43.1 MVKKWSWGEPLLLVSICILGWRISFINGATDPGDVSALNAMYSSLNSPPILTQWSSSGGDPCGQIWKGITCLGLRVTEISLSGLGLSGTMGYQLSSLTSLTNLDVSNNNLGPDIPYQLPQNLQKLNLGWNNFSGSIPYSISQMSLLISLNMSHNQLQNQVNDMFWKLSSLAMLDISFNFLSGALPQSFSNLTSLNAMFLQNNQFSGTIDVLANLPLQNLNVENNHFTGWVPERLKNINIQEGGNSWSFGFAPPPPPGTPPANQNYRYHKAGNSYSPLGSDAAGGGSNGSGIGGGAIAGILISVLVVGAILAYLLVKRTSKRPSTDVEKQKHGNLPIVSPASNEVQDALAEMKLVHTSSSFDAKELESPALINLKPPPIDRHKSFDDNDTSKIPVVKKTNVTAPLSVKSYSIADLQMATGSFNVENLLDEGSLGRVYRAQFNDGKVLVVKKIDSAAFRRELLEDFTEIVANISQLHHPNVTELMGYCSEHSLHLLIYEFHKNGSLHDFLHISDEYSKPLTWNSRVKIALGTARALEYLHEVCSPSVVHRNIKSANILLDAEMNPHLSDCGLASFITNLDQALDQQTGSGYSAPEVTMSGQYTLKSDVYSFGVVMLELLSGRKPFDSSRPRAEQSLVRWATPQLHDIDALTKMVDPALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRSNMSRRTFGSDHGSSFRTDDLDACKTS 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21789300 21797787 - MELO3C026658.2.1 Cme04g01519 325780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01519 726 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Cme04g01519 726 SUPERFAMILY L domain-like 30 236 - -
Cme04g01519 726 Pfam Protein tyrosine and serine/threonine kinase 423 693 IPR001245 GO:0004672|GO:0006468
Cme04g01519 726 ProSiteProfiles Protein kinase domain profile. 421 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g01519 726 MobiDBLite consensus disorder prediction 706 726 - -
Cme04g01519 726 Gene3D Transferase(Phosphotransferase) domain 1 500 717 - -
Cme04g01519 726 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 20 720 - -
Cme04g01519 726 Gene3D Ribonuclease Inhibitor 31 249 IPR032675 -
Cme04g01519 726 PANTHER OS01G0253100 PROTEIN 20 720 IPR045271 GO:0004714|GO:0006468
Cme04g01519 726 Pfam Leucine rich repeat 121 178 IPR001611 GO:0005515
Cme04g01519 726 SUPERFAMILY Protein kinase-like (PK-like) 402 693 IPR011009 -
Cme04g01519 726 MobiDBLite consensus disorder prediction 711 726 - -
Cme04g01519 726 Gene3D Phosphorylase Kinase; domain 1 383 498 - -
Cme04g01519 726 CDD STKc_IRAK 427 696 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02755 Cme-Chr1:34670615 Cme04g01519 Cme-Chr4:21789300 0 dispersed
Cme03g00822 Cme-Chr3:15445884 Cme04g01519 Cme-Chr4:21789300 0 dispersed
Cme04g01519 Cme-Chr4:21789300 Cme12g00906 Cme-Chr12:15934595 0 dispersed
Cme04g01519 Cme-Chr4:21789300 Cme08g00325 Cme-Chr8:2068138 9.96E-145 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64814 PF07714 PK_Tyr_Ser-Thr 1.30E-41 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01519 - - csv:101208239 1360.9