Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01519 ATGGTGAAGAAGTGGAGTTGGGGAGAGCCGTTGCTGCTAGTCAGTATCTGCATTTTGGGATGGAGGATTAGTTTTATCAATGGAGCTACGGATCCAGGAGATGTATCGGCTCTAAATGCCATGTATAGTAGTTTAAACTCTCCTCCAATTCTAACACAATGGAGTTCGAGTGGTGGAGATCCATGTGGACAAATTTGGAAAGGCATTACTTGCTTGGGCTTAAGGGTCACAGAAATTTCATTGTCTGGTTTAGGACTTTCTGGAACAATGGGATATCAGCTCTCGAGTTTGACATCCCTAACTAATCTAGATGTGAGTAACAACAATCTTGGACCTGACATACCTTATCAGCTCCCTCAAAACTTGCAAAAATTAAACCTTGGATGGAATAACTTCAGTGGAAGCATCCCCTATTCTATTTCTCAAATGAGTTTGCTTATTTCCTTAAACATGAGCCACAATCAGCTTCAGAATCAAGTGAATGATATGTTCTGGAAGCTTTCTTCCCTGGCCATGTTGGACATCTCTTTCAATTTTCTGTCAGGTGCCCTCCCCCAGAGTTTTAGCAACCTTACCAGTCTTAACGCAATGTTTCTGCAAAACAACCAATTCAGTGGCACTATTGATGTTCTTGCAAATCTTCCGCTACAAAATTTGAATGTCGAGAACAACCATTTTACTGGTTGGGTTCCTGAACGATTGAAGAATATAAATATTCAGGAGGGTGGCAATTCTTGGAGCTTTGGATTTGCACCCCCACCTCCACCTGGGACTCCTCCAGCCAACCAAAATTACAGATATCACAAGGCTGGTAACAGTTACAGCCCACTGGGTAGTGATGCTGCTGGTGGAGGTAGCAATGGATCAGGAATCGGTGGTGGTGCCATTGCTGGAATTCTTATATCTGTGCTAGTCGTAGGAGCTATACTAGCATATCTTCTTGTAAAGAGAACATCCAAGAGGCCATCCACAGACGTAGAAAAGCAAAAGCATGGGAACTTGCCTATTGTATCTCCTGCTTCAAATGAAGTGCAAGATGCATTGGCAGAGATGAAGCTTGTTCATACTTCATCATCATTTGATGCAAAAGAATTGGAATCTCCTGCTTTAATCAATCTCAAACCCCCACCTATTGATCGTCATAAATCATTTGATGACAATGATACATCAAAGATACCCGTGGTGAAAAAGACCAATGTCACTGCTCCATTAAGTGTGAAATCATACTCAATAGCAGATCTGCAAATGGCTACGGGTAGTTTCAATGTAGAAAACCTTCTTGATGAGGGATCACTTGGACGTGTTTATCGGGCTCAGTTCAACGATGGGAAGGTTCTTGTAGTGAAGAAAATAGATTCAGCTGCCTTCCGTAGAGAATTGTTGGAAGATTTCACGGAGATCGTTGCTAATATATCTCAGCTGCATCATCCGAATGTAACCGAGCTAATGGGCTATTGCTCAGAGCATAGCCTGCATTTGCTAATATACGAGTTCCATAAGAATGGGTCACTACATGACTTCTTGCACATATCAGATGAATATAGCAAGCCACTGACTTGGAACTCACGTGTCAAGATTGCTTTAGGGACGGCCCGTGCTTTAGAGTACCTACATGAAGTTTGTTCCCCGTCAGTTGTTCACAGAAATATCAAGTCAGCCAATATCTTATTAGATGCCGAAATGAATCCTCATCTCTCCGATTGTGGTCTGGCTAGCTTTATAACCAATCTAGATCAGGCATTGGATCAGCAGACAGGATCTGGGTACAGTGCTCCTGAGGTTACCATGTCTGGTCAATATACATTAAAAAGCGACGTATATAGCTTTGGAGTGGTGATGTTAGAACTTCTAAGCGGACGTAAGCCATTTGATAGTTCAAGACCAAGGGCTGAGCAATCCTTGGTTCGATGGGCTACGCCTCAGCTCCATGATATTGATGCCTTGACAAAAATGGTTGATCCTGCACTGAAAGGGCTCTATCCTGTTAAGTCTCTCTCAAGATTTGCAGATGTTGTAGCTCTCTGCGTCCAGCCTGAGCCTGAATTCAGACCACCCATGTCGGAGGTGGTGGAAGCGTTGGTTCGGCTGGTGCAGAGATCCAACATGAGCAGGAGAACATTTGGAAGTGATCATGGATCATCTTTTAGAACCGATGATCTTGATGCATGCAAAACATCTTAA 2181 43.1 MVKKWSWGEPLLLVSICILGWRISFINGATDPGDVSALNAMYSSLNSPPILTQWSSSGGDPCGQIWKGITCLGLRVTEISLSGLGLSGTMGYQLSSLTSLTNLDVSNNNLGPDIPYQLPQNLQKLNLGWNNFSGSIPYSISQMSLLISLNMSHNQLQNQVNDMFWKLSSLAMLDISFNFLSGALPQSFSNLTSLNAMFLQNNQFSGTIDVLANLPLQNLNVENNHFTGWVPERLKNINIQEGGNSWSFGFAPPPPPGTPPANQNYRYHKAGNSYSPLGSDAAGGGSNGSGIGGGAIAGILISVLVVGAILAYLLVKRTSKRPSTDVEKQKHGNLPIVSPASNEVQDALAEMKLVHTSSSFDAKELESPALINLKPPPIDRHKSFDDNDTSKIPVVKKTNVTAPLSVKSYSIADLQMATGSFNVENLLDEGSLGRVYRAQFNDGKVLVVKKIDSAAFRRELLEDFTEIVANISQLHHPNVTELMGYCSEHSLHLLIYEFHKNGSLHDFLHISDEYSKPLTWNSRVKIALGTARALEYLHEVCSPSVVHRNIKSANILLDAEMNPHLSDCGLASFITNLDQALDQQTGSGYSAPEVTMSGQYTLKSDVYSFGVVMLELLSGRKPFDSSRPRAEQSLVRWATPQLHDIDALTKMVDPALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRSNMSRRTFGSDHGSSFRTDDLDACKTS 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21789300 21797787 - MELO3C026658.2.1 Cme04g01519 325780

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01519 726 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Cme04g01519 726 SUPERFAMILY L domain-like 30 236 - -
Cme04g01519 726 Pfam Protein tyrosine and serine/threonine kinase 423 693 IPR001245 GO:0004672|GO:0006468
Cme04g01519 726 ProSiteProfiles Protein kinase domain profile. 421 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g01519 726 MobiDBLite consensus disorder prediction 706 726 - -
Cme04g01519 726 Gene3D Transferase(Phosphotransferase) domain 1 500 717 - -
Cme04g01519 726 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 20 720 - -
Cme04g01519 726 Gene3D Ribonuclease Inhibitor 31 249 IPR032675 -
Cme04g01519 726 PANTHER OS01G0253100 PROTEIN 20 720 IPR045271 GO:0004714|GO:0006468
Cme04g01519 726 Pfam Leucine rich repeat 121 178 IPR001611 GO:0005515
Cme04g01519 726 SUPERFAMILY Protein kinase-like (PK-like) 402 693 IPR011009 -
Cme04g01519 726 MobiDBLite consensus disorder prediction 711 726 - -
Cme04g01519 726 Gene3D Phosphorylase Kinase; domain 1 383 498 - -
Cme04g01519 726 CDD STKc_IRAK 427 696 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01519 - - - csv:101208239 1360.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02755 Cme-Chr1:34670615 Cme04g01519 Cme-Chr4:21789300 0 dispersed
Cme03g00822 Cme-Chr3:15445884 Cme04g01519 Cme-Chr4:21789300 0 dispersed
Cme04g01519 Cme-Chr4:21789300 Cme12g00906 Cme-Chr12:15934595 0 dispersed
Cme04g01519 Cme-Chr4:21789300 Cme08g00325 Cme-Chr8:2068138 9.96E-145 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme01g00355 . 31 786 Strubbelig Receptor Gene Family AT4G03390 61.7 4.9e-205 711.4
Cme01g02755 . 355 681 Strubbelig Receptor Gene Family AT4G03390 55.1 1.1e-90 331.6
Cme04g02226 . 4 637 Strubbelig Receptor Gene Family AT5G06820 51.7 2.0e-160 563.1
Cme03g00822 . 4 674 Strubbelig Receptor Gene Family AT1G78980 59.7 2.0e-181 632.9
Cme04g01519 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.1 6.9e-150 528.1
Cme03g00822 . 4 652 Strubbelig Receptor Gene Family AT3G13065 55.0 1.4e-139 493.8
Cme01g02755 . 371 664 Strubbelig Receptor Gene Family AT3G13065 60.5 1.6e-98 357.5
Cme12g00906 . 458 751 Strubbelig Receptor Gene Family AT1G11130 53.7 5.9e-85 312.4
Cme04g02226 . 4 637 Strubbelig Receptor Gene Family AT5G06820 51.7 2.0e-160 563.1
Cme01g00355 . 31 786 Strubbelig Receptor Gene Family AT4G03390 61.7 4.9e-205 711.4
Cme01g02755 . 355 681 Strubbelig Receptor Gene Family AT4G03390 55.1 1.1e-90 331.6
Cme03g00822 . 4 652 Strubbelig Receptor Gene Family AT3G13065 55.0 1.4e-139 493.8
Cme01g02755 . 371 664 Strubbelig Receptor Gene Family AT3G13065 60.5 1.6e-98 357.5
Cme03g00822 . 4 674 Strubbelig Receptor Gene Family AT1G78980 59.7 2.0e-181 632.9
Cme04g01519 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.1 6.9e-150 528.1
Cme04g01519 . 1 719 Strubbelig Receptor Gene Family AT1G53730 58.3 3.7e-207 718.4
Cme01g02755 . 1 691 Strubbelig Receptor Gene Family AT1G53730 59.0 5.1e-172 601.7
Cme03g00822 . 5 660 Strubbelig Receptor Gene Family AT1G53730 51.5 1.1e-150 530.8
Cme12g00906 . 79 759 Strubbelig Receptor Gene Family AT1G53730 50.6 4.6e-149 525.4
Cme04g01519 . 11 714 Strubbelig Receptor Gene Family AT3G14350 53.8 2.4e-187 652.5
Cme01g02755 . 6 681 Strubbelig Receptor Gene Family AT3G14350 53.5 1.0e-153 540.8
Cme12g00906 . 208 781 Strubbelig Receptor Gene Family AT4G22130 63.0 3.3e-179 625.2
Cme04g01519 . 398 719 Strubbelig Receptor Gene Family AT4G22130 63.3 1.9e-118 423.3
Cme01g02755 . 368 683 Strubbelig Receptor Gene Family AT4G22130 65.1 8.1e-117 417.9
Cme01g00355 . 454 778 Strubbelig Receptor Gene Family AT4G22130 56.8 2.9e-106 382.9
Cme03g00822 . 355 674 Strubbelig Receptor Gene Family AT4G22130 57.1 1.5e-99 360.5
Cme08g00325 . 367 655 Strubbelig Receptor Gene Family AT4G22130 60.5 1.3e-98 357.5
Cme04g02226 . 299 621 Strubbelig Receptor Gene Family AT4G22130 50.5 4.2e-89 325.9
Cme04g02225 . 334 624 Strubbelig Receptor Gene Family AT4G22130 51.2 1.7e-77 287.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64814 PF07714 PK_Tyr_Ser-Thr 1.30E-41 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g01519 Cme_Chr04 FPKM 16.108494 18.10681 9.523817 8.494845 27.01997 28.096056 26.705278 12.092136 10.371247 8.952466