Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01566 ATGGCTTCTTCTTCTTCTACATCCACGAACACGAGCGTGTCGGGGTGTGGTGGTAGCGGTGGCGGTGGTTCGCCGTGTGGAGCATGCAAGTTTCTAAGGAGAAAATGTGTGGCTGATTGTATATTTGCTCCTTATTTTTGTTCAGAACAAGGGGCTGCGAGATTTGCTGCCATTCATAAAGTGTTCGGAGCAAGTAATGTTTCGAAGTTGTTGCTTCATGTTCCTGTTCACGATCGTTGTGAAGCTGTTGTTACTATTGCCTATGAAGCTCAAGCAAGGATTCATGATCCTGTTTATGGTTGTGTTGCTCATATTTTTGCTCTTCAACAACAGGTGGCATACTTACAAACACAGCTGATGCAAGCCAAGGCTCAACTTGCACAAACCCTAATGGATTCAGGAAGTAATATGGAGATTCAATGGACAGGCGATTTCAATAACAGCAACCTCTCGAATGGATCAATTCCAAATAACAATTATCAAACTCAAATTATGAACAACCCAACCCCACAAAGCTCTCTAGAATCAGCTGCCAACAATGATGAAGCATTGTTATTCATTAATCAAAATCAATTATTTCATGAGAGCCAATTAAGCAGATCATCGCAAGAACCTCAAATTCTTCAACCATTTCCTAGAAAAAAATTATCTTCTTCTCATGCAGATCTTGGGGAACTCCATGCTTTGGCCCTTAGAATGATGAGAAACTAA 711 41.07 MASSSSTSTNTSVSGCGGSGGGGSPCGACKFLRRKCVADCIFAPYFCSEQGAARFAAIHKVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARIHDPVYGCVAHIFALQQQVAYLQTQLMQAKAQLAQTLMDSGSNMEIQWTGDFNNSNLSNGSIPNNNYQTQIMNNPTPQSSLESAANNDEALLFINQNQLFHESQLSRSSQEPQILQPFPRKKLSSSHADLGELHALALRMMRN 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22964703 22966417 + MELO3C024038.2.1 Cme04g01566 325827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01566 236 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 12 235 - -
Cme04g01566 236 MobiDBLite consensus disorder prediction 1 22 - -
Cme04g01566 236 Pfam Lateral organ boundaries (LOB) domain 25 123 IPR004883 -
Cme04g01566 236 MobiDBLite consensus disorder prediction 1 18 - -
Cme04g01566 236 ProSiteProfiles LOB domain profile. 24 126 IPR004883 -
Cme04g01566 236 PANTHER LOB DOMAIN CONTAINING PROTEIN 12 235 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01036 Cme-Chr4:14194325 Cme04g01566 Cme-Chr4:22964703 1.30E-51 dispersed
Cme04g01566 Cme-Chr4:22964703 Cme04g02065 Cme-Chr4:28030339 4.03E-51 dispersed
Cme04g01566 Cme-Chr4:22964703 Cme06g00253 Cme-Chr6:1538026 4.55E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41201 PF03195 LOB 2.70E-36 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01566 K13944 - csv:101214521 422.935