Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme04g01583 | ATGGCGGCTGCAGCTACAACGAGCGTTGTGCCACCGAATCGGCGTCGGATTAGCGCGCCGGAAGACAAACTGGAATTCGAGACGACGGAGGGGGTTGAGCCGATCTTGACTTTCGATCAGATGGGCATTAAAGATGACCTTCTTCGTGGAATATATGCATACGGTTTTGAAAAGCCATCTGCCATTCAGCAGAGAGCTGTGAGGCCGATTATTGAGGGTCGAGATGTTATTGCGCAGGCTCAATCTGGGACTGGGAAGACTTCCATGATTGCCCTCACCGTTTGCCAGATGGTTGATACCACAAGTAGAGAGGTGCAGGCCTTGATCTTGTCCCCTACGAGAGAATTGGCTACTCAGACAGAGAAGGTTATATTGGCAATTGGCGACTACATTAATATACAAGCGCACGCATGTATTGGTGGCAAAAGTGTGGGTGAAGATATCAGAAAGCTTGAGTTTGGAGTTCAGGTTGTGTCGGGAACTCCTGGAAGAGTCTGTGACATGATCAAGAGAAGGACATTGCGTACCAGAGCCATTAAGTTATTAGTTCTGGACGAGTCTGATGAAATGCTGAGCAGGGGGTTTAAAGACCAAATTTATGATGTATATCGTTATCTTCCACCAGAACTTCAGGTTGTCTTGATTTCTGCTACCCTTCCTCATGAAATCCTGGAGATGACAAACAAGTTTATGACAGATCCTGTGAGGATTCTTGTCAAGCGTGATGAGTTAACTTTGGAGGGTATTAAGCAATTCTTTGTCGCGGTTGAAAGGGAAGAATGGAAGTTTGATACCTTATGTGATCTTTATGATACCTTGACTATCACTCAAGCTGTCATTTTCTGTAACACTAAGCGGAAGGTTGAATGGTTGACTGAGAAGATGCGAAGTAATAACTTCACTGTATCACATATGCATGGGGACATGCCTCAAAAGGAAAGAGATGCAATCATGGGGGAGTTCCGATCAGGAACTACCCGCGTTCTAATTACTACTGATGTTTGGGCACGAGGGCTTGATGTTCAGCAGGTATCACTTGTGATAAATTATGACCTTCCAAACAATCGAGAACTTTACATTCACAGGATAGGAAGGTCGGGTCGGTTTGGGCGCAAGGGTGTTGCTATTAACTTTGTGAAAAGCGATGACATCAAGATCCTGAGAGATATTGAGCAATACTACAGTACCCAGATTGACGAGATGCCCATGAATGTTGCTGATTTGATTTAA | 1230 | 44.88 | MAAAATTSVVPPNRRRISAPEDKLEFETTEGVEPILTFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQMVDTTSREVQALILSPTRELATQTEKVILAIGDYINIQAHACIGGKSVGEDIRKLEFGVQVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVEWLTEKMRSNNFTVSHMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI | 409 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 23137930 | 23142342 | - | MELO3C024028.2.1 | Cme04g01583 | 325844 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme04g01583 | 409 | Pfam | Helicase conserved C-terminal domain | 262 | 370 | IPR001650 | - | |
Cme04g01583 | 409 | Gene3D | - | 26 | 244 | IPR027417 | - | |
Cme04g01583 | 409 | SMART | ultradead3 | 55 | 252 | IPR014001 | - | |
Cme04g01583 | 409 | CDD | DEADc_EIF4AIII_DDX48 | 38 | 238 | - | - | |
Cme04g01583 | 409 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 104 | 392 | IPR027417 | - | |
Cme04g01583 | 409 | Gene3D | - | 245 | 409 | IPR027417 | - | |
Cme04g01583 | 409 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 67 | 237 | IPR014001 | - | |
Cme04g01583 | 409 | CDD | SF2_C_DEAD | 249 | 379 | - | - | |
Cme04g01583 | 409 | Pfam | DEAD/DEAH box helicase | 61 | 223 | IPR011545 | GO:0003676|GO:0005524 | |
Cme04g01583 | 409 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 248 | 409 | IPR001650 | - | |
Cme04g01583 | 409 | SMART | helicmild6 | 289 | 370 | IPR001650 | - | |
Cme04g01583 | 409 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 36 | 64 | IPR014014 | GO:0003724 | |
Cme04g01583 | 409 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 20 | 402 | - | - | |
Cme04g01583 | 409 | PANTHER | BNAC03G41130D PROTEIN | 20 | 402 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme04g01226 | Cme-Chr4:17004019 | Cme04g01583 | Cme-Chr4:23137930 | 0 | dispersed | |
Cme04g01583 | Cme-Chr4:23137930 | Cme06g00191 | Cme-Chr6:1170357 | 9.08E-94 | dispersed | |
Cme08g00565 | Cme-Chr8:3567564 | Cme04g01583 | Cme-Chr4:23137930 | 1.26E-08 | dispersed | |
Cme04g01583 | Cme-Chr4:23137930 | Cme01g02831 | Cme-Chr1:35251061 | 4.48E-177 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme04g01583 | K13025 | - | csv:101222664 | 801.586 |