Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01583 ATGGCGGCTGCAGCTACAACGAGCGTTGTGCCACCGAATCGGCGTCGGATTAGCGCGCCGGAAGACAAACTGGAATTCGAGACGACGGAGGGGGTTGAGCCGATCTTGACTTTCGATCAGATGGGCATTAAAGATGACCTTCTTCGTGGAATATATGCATACGGTTTTGAAAAGCCATCTGCCATTCAGCAGAGAGCTGTGAGGCCGATTATTGAGGGTCGAGATGTTATTGCGCAGGCTCAATCTGGGACTGGGAAGACTTCCATGATTGCCCTCACCGTTTGCCAGATGGTTGATACCACAAGTAGAGAGGTGCAGGCCTTGATCTTGTCCCCTACGAGAGAATTGGCTACTCAGACAGAGAAGGTTATATTGGCAATTGGCGACTACATTAATATACAAGCGCACGCATGTATTGGTGGCAAAAGTGTGGGTGAAGATATCAGAAAGCTTGAGTTTGGAGTTCAGGTTGTGTCGGGAACTCCTGGAAGAGTCTGTGACATGATCAAGAGAAGGACATTGCGTACCAGAGCCATTAAGTTATTAGTTCTGGACGAGTCTGATGAAATGCTGAGCAGGGGGTTTAAAGACCAAATTTATGATGTATATCGTTATCTTCCACCAGAACTTCAGGTTGTCTTGATTTCTGCTACCCTTCCTCATGAAATCCTGGAGATGACAAACAAGTTTATGACAGATCCTGTGAGGATTCTTGTCAAGCGTGATGAGTTAACTTTGGAGGGTATTAAGCAATTCTTTGTCGCGGTTGAAAGGGAAGAATGGAAGTTTGATACCTTATGTGATCTTTATGATACCTTGACTATCACTCAAGCTGTCATTTTCTGTAACACTAAGCGGAAGGTTGAATGGTTGACTGAGAAGATGCGAAGTAATAACTTCACTGTATCACATATGCATGGGGACATGCCTCAAAAGGAAAGAGATGCAATCATGGGGGAGTTCCGATCAGGAACTACCCGCGTTCTAATTACTACTGATGTTTGGGCACGAGGGCTTGATGTTCAGCAGGTATCACTTGTGATAAATTATGACCTTCCAAACAATCGAGAACTTTACATTCACAGGATAGGAAGGTCGGGTCGGTTTGGGCGCAAGGGTGTTGCTATTAACTTTGTGAAAAGCGATGACATCAAGATCCTGAGAGATATTGAGCAATACTACAGTACCCAGATTGACGAGATGCCCATGAATGTTGCTGATTTGATTTAA 1230 44.88 MAAAATTSVVPPNRRRISAPEDKLEFETTEGVEPILTFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQMVDTTSREVQALILSPTRELATQTEKVILAIGDYINIQAHACIGGKSVGEDIRKLEFGVQVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVEWLTEKMRSNNFTVSHMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23137930 23142342 - MELO3C024028.2.1 Cme04g01583 325844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01583 409 Pfam Helicase conserved C-terminal domain 262 370 IPR001650 -
Cme04g01583 409 Gene3D - 26 244 IPR027417 -
Cme04g01583 409 SMART ultradead3 55 252 IPR014001 -
Cme04g01583 409 CDD DEADc_EIF4AIII_DDX48 38 238 - -
Cme04g01583 409 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 104 392 IPR027417 -
Cme04g01583 409 Gene3D - 245 409 IPR027417 -
Cme04g01583 409 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 67 237 IPR014001 -
Cme04g01583 409 CDD SF2_C_DEAD 249 379 - -
Cme04g01583 409 Pfam DEAD/DEAH box helicase 61 223 IPR011545 GO:0003676|GO:0005524
Cme04g01583 409 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 248 409 IPR001650 -
Cme04g01583 409 SMART helicmild6 289 370 IPR001650 -
Cme04g01583 409 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 36 64 IPR014014 GO:0003724
Cme04g01583 409 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 20 402 - -
Cme04g01583 409 PANTHER BNAC03G41130D PROTEIN 20 402 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01226 Cme-Chr4:17004019 Cme04g01583 Cme-Chr4:23137930 0 dispersed
Cme04g01583 Cme-Chr4:23137930 Cme06g00191 Cme-Chr6:1170357 9.08E-94 dispersed
Cme08g00565 Cme-Chr8:3567564 Cme04g01583 Cme-Chr4:23137930 1.26E-08 dispersed
Cme04g01583 Cme-Chr4:23137930 Cme01g02831 Cme-Chr1:35251061 4.48E-177 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01583 K13025 - csv:101222664 801.586