Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01644 ATGTGTATTTTTATATTTGGTTTGGATGCAACTGGGAAGGGTTGTATCGAAGTTCATTTAGATGTTGTGATTGTTGATTCTCAGGAGTGGTGGAGTTGCAATTTTGATCACTGCGTATCCCTTAGTAATTTCTTGTATAAGCTTGTTACATGTTCATTCCGATATTTGAGTATGTGTGGTGGTCCAGAAAAATCTAATTCTTCATCGACTACAACGGCAAGCTCATCACCTAACCCCAAAGACATGAATCTTTTAACAGTTGATTGTGAGGATTCTTTTTATAGTTTACTGGAGCTTGTTTCTGACAATGATGCTGAAGGCTTCAAAAGTTTGATGGAGTCTGATTTGTTTTCTCTGAACAAGTCTGGTCTTTGGTATGTTCGTCAAAAAGGCTCAAAACAAGTTGTTCATGAGCATAGGACTCCCCTGATGGTTGCTGCCACATATGGTTGTGTTGATGTTCTGAAGCTTATATTATCATATCCTGAGGTTGATGTTAATCTCTCAGCTGGCACAGACAAGAGCACTGCTCTTCACTGTGCTACTTCCAGTGGATCTGTGAATGCAGTTGATATTGTTGATTTGCTATTATCTGCTGGTGCTGACCCAAACTCCAAGGATGTTAATGGTGACCGCCCTGTTGATGTCATTTTTATTCATCCAAAGTTGCAGAAACAGAATACGAGGTTCAAGCTTGAGGAGCTTCTTAATAATAGTTCAAATGGATCAATGGACGTGTCCTGTTTACATTTGTCAATTAAAACACCCAGTTCAGAGTCACCACCACTTTCTTCATCATTGGAGGATGAATTTCCATCTCCACCCAAGTCTATTTCTTCGCCCAAATTTACTGACGGGTTTGGAAACTCTACAAAGGAGAAAAAAGAATATCCAATTGATCCATCGCTTCCTGACATTAAGAACAGCATATATGCAACTGACGAGTTTCGCATGTTCTCTTTCAAGGTTAGGCCTTGTTCTCGAGCATATTCTCATGATTGGACTGAGTGTCCTTTTGTCCACCCGGGGGAGAATGCTCGCAGAAGAGACCCAAGGAAGTTTCACTACAGCTGTGTTCCTTGCCCAGATTTCAGAAAGGGAGCTTGTAGGCGTGGGGATATGTGTGAATATGCACATGGAGTGTTTGAGTGTTGGCTACATCCAGCACAGTACCGAACTCGTCTGTGCAAGGATGGTACCAGTTGCAATAGGCGGGTTTGCTTCTTTGCTCACACCAATGAAGAACTAAGGCCATTGTATGTGTCCACTGGATCTGCTGTCCCTTCCCCACGGTCAATTGGGTCAGCACCAACTGTAATGGATATGGCCACTGCATTGGGTCTTCTTCCTGGTTCTCCCTCATCGATGTCTGCATTATCCCCATCTCCATTTACTCAATCCATGTCACCCTCATCTAATGGTGTTTCTCACTCTTCTGTCAACTGGCAACAGCCTAATGTTCCGACCCTTCATCTTCCAGGAAGTAACCTTCAATCCAGCCGGTTGAGGTCATCTCTGAATGCCAGAGATATGCCTCTGGAGGATTTAAATGCCTTGCCAGACTTTGAAAATCAGCCACGAATTTTGAACGACATGAACTGTTTCTCTCAGCCTCGTCCGAGTGCTGTGTCTGTTAGCCGATCTGGCTGGACCCAAACACTAACCCCTAACAACCTTGAAGAGCTTTTTTCTTCTGAGATCTCTTCGTCTCCTCGATTCTCTGATCCGGCTGCCAATGTCTTTTCACCCACCCGCAAATCAACAATGCTTAACCAATTCCAGCAGCAGCAGCAGAACATGTTGTCACCTATTAATACAAGCATTATGTCCCCTAAGAATGTTGATCATCATTTGTTGCAGGCCTCTTTTGGAGTTTCATCCCCAGGAAGGATGTCACCGAGGAGCACTGAGCCACTGTCCCCAATGGGATCTAGGTTCTCTGCCTTTGTACAGCGTGAAAAGCAACATCTTCGCACTCTCAGTTCAAGGGAGCTTGGATCTAACATCCCAAGCTCATTGATCGGATCTCCTGTCAATTCTATGCCTAAATGGGGGTCCCCCAATGGAAAGGTGGACTGGTCGGTTGGTAAGAATGAACTGGGTCAACTCCGGAGGTCGTCATCTTTTGAAATGGGAAATAACGGGGAGGAGCCTGACTTATCATGGGTTCAATCCCTGGTGAAAGAATCCCCACCTGAGATGCTAAAAGATAAACTGGCAGTGCCTGGGATGGGCACTGCAGCATCCGGTGAGGGTCTAACTACTTCTAAATCACAATTAGAATCCACTGATCATTCTGTGATAGGAGCTTGGCTTGAGCAGATGCAGCTTGATCAGCTTGTAGTGTAG 2349 44.53 MCIFIFGLDATGKGCIEVHLDVVIVDSQEWWSCNFDHCVSLSNFLYKLVTCSFRYLSMCGGPEKSNSSSTTTASSSPNPKDMNLLTVDCEDSFYSLLELVSDNDAEGFKSLMESDLFSLNKSGLWYVRQKGSKQVVHEHRTPLMVAATYGCVDVLKLILSYPEVDVNLSAGTDKSTALHCATSSGSVNAVDIVDLLLSAGADPNSKDVNGDRPVDVIFIHPKLQKQNTRFKLEELLNNSSNGSMDVSCLHLSIKTPSSESPPLSSSLEDEFPSPPKSISSPKFTDGFGNSTKEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTNEELRPLYVSTGSAVPSPRSIGSAPTVMDMATALGLLPGSPSSMSALSPSPFTQSMSPSSNGVSHSSVNWQQPNVPTLHLPGSNLQSSRLRSSLNARDMPLEDLNALPDFENQPRILNDMNCFSQPRPSAVSVSRSGWTQTLTPNNLEELFSSEISSSPRFSDPAANVFSPTRKSTMLNQFQQQQQNMLSPINTSIMSPKNVDHHLLQASFGVSSPGRMSPRSTEPLSPMGSRFSAFVQREKQHLRTLSSRELGSNIPSSLIGSPVNSMPKWGSPNGKVDWSVGKNELGQLRRSSSFEMGNNGEEPDLSWVQSLVKESPPEMLKDKLAVPGMGTAASGEGLTTSKSQLESTDHSVIGAWLEQMQLDQLVV 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23708827 23712984 + MELO3C023977.2.1 Cme04g01644 325905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01644 782 SMART ANK_2a 173 205 IPR002110 GO:0005515
Cme04g01644 782 SMART ANK_2a 138 168 IPR002110 GO:0005515
Cme04g01644 782 Gene3D - 355 418 - -
Cme04g01644 782 MobiDBLite consensus disorder prediction 457 480 - -
Cme04g01644 782 PRINTS Ankyrin repeat signature 192 206 IPR002110 GO:0005515
Cme04g01644 782 PRINTS Ankyrin repeat signature 139 154 IPR002110 GO:0005515
Cme04g01644 782 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 360 380 IPR000571 GO:0046872
Cme04g01644 782 ProSiteProfiles Ankyrin repeat profile. 173 208 IPR002110 GO:0005515
Cme04g01644 782 ProSiteProfiles Zinc finger C3H1-type profile. 360 382 IPR000571 GO:0046872
Cme04g01644 782 SMART c3hfinal6 390 413 IPR000571 GO:0046872
Cme04g01644 782 SMART c3hfinal6 355 381 IPR000571 GO:0046872
Cme04g01644 782 MobiDBLite consensus disorder prediction 257 287 - -
Cme04g01644 782 MobiDBLite consensus disorder prediction 257 299 - -
Cme04g01644 782 PANTHER UNKEMPT FAMILY MEMBER 75 780 IPR045234 -
Cme04g01644 782 MobiDBLite consensus disorder prediction 61 81 - -
Cme04g01644 782 SUPERFAMILY Ankyrin repeat 137 217 IPR036770 -
Cme04g01644 782 Pfam Ankyrin repeats (3 copies) 133 207 IPR002110 GO:0005515
Cme04g01644 782 Gene3D - 63 263 IPR036770 -
Cme04g01644 782 ProSiteProfiles Ankyrin repeat region circular profile. 173 207 - -
Cme04g01644 782 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 75 780 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01644 Cme-Chr4:23708827 Cme04g02194 Cme-Chr4:29184502 0 dispersed
Cme04g01644 Cme-Chr4:23708827 Cme02g00207 Cme-Chr2:1614273 1.00E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41203 PF12796 Ank_2 1.60E-10 CL0465 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01644 - - csv:101205376 1332.39