Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme04g01685 | ATGGCGTTTTCCACACCGCATCTCCGGTCACCGATGATCCTTGTTTTACAGGACAAGGTGGAACAAGCCATAATCGGAACAAAGAACGTCATGACCGCCGCTGCTGAAGCAAACATTCGACGAGTTGTGTTCACGTCGTCGATTGGCACTGTCTACATGAACCCAAACCGAAGCCCGGACACGGTGGTGGACGAGTCTTGTTGGAGTGACCTTGAGTTTTGCAAGAACACAAAGAATTGGTATTGTTATGCAAAGACAAAGGCAGAACAAGCAGCATGGGAAGTGGCGAAAGAAAGAGGAATTGATCTTGTGGTGGTGAACCCAATGTTGGTATTGGGACCAATGTTGCAAGAAGGAGTGAATGCAAGTGTTGTTCATATAATGAAATATTTGACAGGATCAGCAAAGACATATGTGAATGCAGTACAAGGTTATGTTGATGTTAAGGATGTTGCCAAAGCTCATCTTTTGGTCTATGAGACTCCCTCAGCTTCAGGAAGATATATTTGCGTTGAGAGTATGCTTCATCGTGGTGAATTGGTTGAAATTCTTGCCAATTTCTTCCCTCAATATCCGCTTCCCACCAAGTGTTCAGATGAAGTAAACCCAAGGAAGAAACCTTACAAATACACAGTTGAGAAGCTAAAGTCATTGGGAATGGAATTCACACCAATCAAACAATGCATTTATGAAACCGTGAAGAGCCTACAAGAAAAGGGTCATCTTCCACTTCCTTCCCAACTCCAACATTAA | 753 | 43.43 | MAFSTPHLRSPMILVLQDKVEQAIIGTKNVMTAAAEANIRRVVFTSSIGTVYMNPNRSPDTVVDESCWSDLEFCKNTKNWYCYAKTKAEQAAWEVAKERGIDLVVVNPMLVLGPMLQEGVNASVVHIMKYLTGSAKTYVNAVQGYVDVKDVAKAHLLVYETPSASGRYICVESMLHRGELVEILANFFPQYPLPTKCSDEVNPRKKPYKYTVEKLKSLGMEFTPIKQCIYETVKSLQEKGHLPLPSQLQH | 250 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 24140189 | 24141886 | + | MELO3C030668.2.1 | Cme04g01685 | 325946 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme04g01685 | 250 | CDD | FR_SDR_e | 7 | 219 | - | - | |
| Cme04g01685 | 250 | Pfam | NAD dependent epimerase/dehydratase family | 20 | 164 | IPR001509 | - | |
| Cme04g01685 | 250 | PANTHER | NAD DEPENDENT EPIMERASE/DEHYDRATASE | 7 | 245 | - | - | |
| Cme04g01685 | 250 | Gene3D | - | 6 | 250 | - | - | |
| Cme04g01685 | 250 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 21 | 237 | IPR036291 | - | |
| Cme04g01685 | 250 | PANTHER | CINNAMOYL-COA REDUCTASE-LIKE PROTEIN | 7 | 245 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme04g01685 | Cme-Chr4:24140189 | Cme04g01730 | Cme-Chr4:24865012 | 3.28E-173 | dispersed | |
| Cme04g01685 | Cme-Chr4:24140189 | Cme04g01686 | Cme-Chr4:24147441 | 9.05E-127 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme04g01685 | K09753 | - | csv:116401652 | 468.003 |