Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01688 ATGGAATCTGTTTACTTAGAGTATCTAACCTTTTTGGATTTAACTAAACAAGGGAAAAATAAGAGCAACCATAAAATGGCTGCTGGAGGATCTGGTTCTGGGCAGCCACAATTCCTTGTGAGGGCTGGGGATGAGAATTTTTCACATGCTCCTTTGATCGAGAACCCGGAAACTGATCAGATTATTGTTCCTGATTTGCTTTGGATCATATTAGTGGCTTCCTTTGCTGCCCTTATCATTCAGTCTTTAGCAGCCAATCTAGGTGTTGTCACTGGAAAACATTTAGCAGAGCACTGTAAAGCTGAGTACCCCAAGGCTCAAAATTTCATCCTCTGGGTCCTTGCTGAAATTGCGATTGTTGCGTGTGATATTCCTGAAGTTATAGGAACTGCTTTTGCATTGAATATGCTCTTCCGCATTCCTGTTTGGTGTGGCGTTCTTCTGACAGGGCTTAGTACACTATTACTTCTTGCACTGCAGCAGTATGGGATTAGAAAGCTTGAATTCTTGATTGCCTTTCTTGTGTTGACAATTGCGGTTTGCTTCTTCCTGGAGCTGGGCTATGCAAAGCCGGACGTTGGAGAAATTTTTTATGGGCTGTTTGTCCCTCAATTGAAAGGAAGTGGTGCCACTGGTCTTGCAATTTCACTTCTTGGTGCTATGGAAGCTTGCAGATTTTATATGATCGAGAGTGGCTTTGCTCTTATGGTGGCCTTCCTCATTAATGTGTCAGTCATTTCAGTTAGTGGTGCAGTTTGCAATTCCCCAGATCTAAATAAGGAGGACCAAATGAGCTGCAATGACTTGGACTTGAATAAAGCTTCATTTTTATTGAGAGTATGTGTGATCTATTTGAAAACTTTTCTAAAATCTAGATCAACGAAACAAAGAAAACCATATATGAAAATTACAGTTTTGACATGGATTATTGGATTGCTCATCATGGCTATCAATATATACTACCTCATGAGCCGTTTTATCCACGTGCTCCTTCATAACGATCTCCATCTTGCAGCAGTCGTCTCCATAGGGATACTTGGATTTTCAGGCGTGGCACTATATTTATCTGGAATTGCTTATCTAGTTTTCAGAAAGACCAAGGAGATAAGTCATCTCTTAGCACTAACAACAGTAGATAATCGAAGACTGAGCAACGAGCCGAGTAACAGATCAAGATATGATCCCCCGAACGAAGATACAGTAAGTATGCAGTTGCCTCAAAGAATTAGAAGTACCAATGATGTAAACTGA 1251 40.77 MESVYLEYLTFLDLTKQGKNKSNHKMAAGGSGSGQPQFLVRAGDENFSHAPLIENPETDQIIVPDLLWIILVASFAALIIQSLAANLGVVTGKHLAEHCKAEYPKAQNFILWVLAEIAIVACDIPEVIGTAFALNMLFRIPVWCGVLLTGLSTLLLLALQQYGIRKLEFLIAFLVLTIAVCFFLELGYAKPDVGEIFYGLFVPQLKGSGATGLAISLLGAMEACRFYMIESGFALMVAFLINVSVISVSGAVCNSPDLNKEDQMSCNDLDLNKASFLLRVCVIYLKTFLKSRSTKQRKPYMKITVLTWIIGLLIMAINIYYLMSRFIHVLLHNDLHLAAVVSIGILGFSGVALYLSGIAYLVFRKTKEISHLLALTTVDNRRLSNEPSNRSRYDPPNEDTVSMQLPQRIRSTNDVN 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24164599 24170373 - MELO3C023938.2.1 Cme04g01688 325949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01688 416 PANTHER METAL TRANSPORTER NRAMP1 300 409 - -
Cme04g01688 416 PANTHER METAL TRANSPORTER NRAMP1 65 221 - -
Cme04g01688 416 Pfam Natural resistance-associated macrophage protein 65 220 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cme04g01688 416 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 222 282 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cme04g01688 416 PANTHER METAL TRANSPORTER NRAMP1 222 282 - -
Cme04g01688 416 PRINTS Natural resistance-associated macrophage protein signature 164 185 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cme04g01688 416 PRINTS Natural resistance-associated macrophage protein signature 111 137 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cme04g01688 416 PRINTS Natural resistance-associated macrophage protein signature 139 158 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cme04g01688 416 MobiDBLite consensus disorder prediction 383 416 - -
Cme04g01688 416 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 300 409 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cme04g01688 416 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 65 221 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01688 Cme-Chr4:24164599 Cme04g01729 Cme-Chr4:24840362 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01688 K21398 - cmo:103500288 712.605