Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01689 ATGGAGTTGGATTTGAGGTTAGGAAATGACCCTTCTCCTTCTTCACATCCAACACCCCTTCATTTTTCCCTTTCTTTTTCCTCCCTTGAACTTCAACATCAAGCTCGCAATCACATTCACCAAAACCACCTCCTTCTTCACTCTCTTAATTCTCCTCCACCACCCGCCGCCTCCGCTTCTCGCCCATCTTCTCCAACCGAAAGATCAAGAGGGAAGGTTTTTACGGAGGTGATTAGCGAAGCGACAGCTGATGGGGGAGGAGAAATAGGTCGAAGATCGTCAAAGGGAATAGTTTGGTCTATAGGAAAGAATAATAGTGAAGAAGAAAGAGAAGGGAAAAGTGAGAATGAAGAAGAAGAAGAACAAGAAGAAATGGATATGAATATGATTAGCGGTGGAAGAAAAAAACTGAGGCTTTCAAGACGACAATCAGCATTTCTTGAAGAAAGCTTCAAACAACACCATACCCTTTACCCTAAGCAAAAGCTAGAAGTTGCAAGAAGGTTGAATCTTCGTCCTCGTCAAGTAGAAGTTTGGTTTCAAAACAGACGAGCAAGAACGAAGTTGAAACAAAATGAAGTAGAATGTGAATACTTGAAGAAATGTTGTGCAACACTTACTCAACAAAACACGAAGCTTCAAAAGGAACTTCAAGACTTGAGAGCTCTCAAAACTACTCATTCTCTCTTCATCAACTCTCCCCCTACTACTCTCACCTTGTGCGCCTCTTGTGAACGCGCCGTCGCAACCCCAATCTCCCGCTGA 765 43.14 MELDLRLGNDPSPSSHPTPLHFSLSFSSLELQHQARNHIHQNHLLLHSLNSPPPPAASASRPSSPTERSRGKVFTEVISEATADGGGEIGRRSSKGIVWSIGKNNSEEEREGKSENEEEEEQEEMDMNMISGGRKKLRLSRRQSAFLEESFKQHHTLYPKQKLEVARRLNLRPRQVEVWFQNRRARTKLKQNEVECEYLKKCCATLTQQNTKLQKELQDLRALKTTHSLFINSPPTTLTLCASCERAVATPISR 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24192692 24195264 - MELO3C023937.2.1 Cme04g01689 325950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01689 254 ProSiteProfiles 'Homeobox' domain profile. 130 190 IPR001356 GO:0003677
Cme04g01689 254 MobiDBLite consensus disorder prediction 100 126 - -
Cme04g01689 254 CDD homeodomain 134 191 IPR001356 GO:0003677
Cme04g01689 254 MobiDBLite consensus disorder prediction 112 126 - -
Cme04g01689 254 Coils Coil 203 223 - -
Cme04g01689 254 Pfam Homeodomain 134 188 IPR001356 GO:0003677
Cme04g01689 254 Gene3D - 138 188 - -
Cme04g01689 254 PANTHER - 1 250 - -
Cme04g01689 254 MobiDBLite consensus disorder prediction 46 72 - -
Cme04g01689 254 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX11-LIKE 1 250 - -
Cme04g01689 254 Coils Coil 103 125 - -
Cme04g01689 254 SUPERFAMILY Homeodomain-like 126 191 IPR009057 -
Cme04g01689 254 SMART HOX_1 132 194 IPR001356 GO:0003677
Cme04g01689 254 SMART halz 190 233 IPR003106 GO:0006355|GO:0043565
Cme04g01689 254 ProSitePatterns 'Homeobox' domain signature. 165 188 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01689 Cme-Chr4:24192692 Cme04g02253 Cme-Chr4:29613050 2.50E-53 dispersed
Cme01g02508 Cme-Chr1:33076673 Cme04g01689 Cme-Chr4:24192692 2.93E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41206 PF00046 Homeodomain 7.30E-14 CL0123 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01689 K09338 - csv:101208907 372.859