Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01727 ATGGCTGCTTTCTCCTCTTGGTTGTTGGATTCTGTTGATACTAAATTAGATCTCAATTCTATGCCTCTCAGATTCTCCGGTGAACCTCCGAAGGAGAGGAATTATATGGATGTCGAGAGGAAGGTTACTGTCAAAGAAGAGACTGGAGCTTTAATGGAGGAGTTGAAGAGGGTTAGTGCAGAGAACAAGAAATTAACTGAAATGTTGACTGTTGTTTGCGAAAATTACAACACTTTGAGAGGACATTTGATGGAACAAATGAACAAAAATGGAGAAAAAGAGATTTCTTCTTCAAAGAAGAGGAAATCAGAGAGTAGCAATAACAATAACAATATGGTTGGAATGAATGGGAATTCTGAAAGTAGTTCAACTGATGAAGAATCTTACAAGAAACCAAAAGAAGAAACCATTAACAAATCAGCTAAAATCACTAGAGTTCAAGTCAAAATTGGAGCTTCTGATTCAAATCTGGTTGTTAAAGATGGATATCAATGGAGGAAATATGGTCAAAAAGTCACTAGAGATAATCCTTGTCCTAGAGCTTATTTCAAATGCTCTTTTGCTCCTAGTTGCCCTGTTAAAAAGAAGGTTCAAAGAAGTGTTGAAGATCAATCAGTTCTTGTAGCCACATATGAAGGTGAACACAATCATCCACACCCATCTCAGATTGAGGCCACTTCCGGTGGTGCCGCAGCCCGTAGTGTTAACATAGCTCCGGCGGTGGTTACGGCAGCGCCGGGATCCTCGTCGGCGCAGGCCGTTTCCCTTGACTTGGTGAAGGCGAAACCGATTATGGAAGCTAAAACGATCGCCAACCCAAGATTTGACTCACCAGAACTGCAACAGTTTCTCGTCGAACAGATGGCCTCTTCATTAACGAAAGATCCCAATTTCACGGCGGCGCTTGCGGCAGCGATTTCGGGAAAGATTTTCCCACATTGA 942 42.04 MAAFSSWLLDSVDTKLDLNSMPLRFSGEPPKERNYMDVERKVTVKEETGALMEELKRVSAENKKLTEMLTVVCENYNTLRGHLMEQMNKNGEKEISSSKKRKSESSNNNNNMVGMNGNSESSSTDEESYKKPKEETINKSAKITRVQVKIGASDSNLVVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPSCPVKKKVQRSVEDQSVLVATYEGEHNHPHPSQIEATSGGAAARSVNIAPAVVTAAPGSSSAQAVSLDLVKAKPIMEAKTIANPRFDSPELQQFLVEQMASSLTKDPNFTAALAAAISGKIFPH 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24790872 24793030 - MELO3C026740.2.1 Cme04g01727 325988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01727 313 PANTHER TRANSCRIPTION FACTOR 12 310 - -
Cme04g01727 313 SUPERFAMILY WRKY DNA-binding domain 157 220 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme04g01727 313 MobiDBLite consensus disorder prediction 102 123 - -
Cme04g01727 313 Gene3D WRKY domain 143 221 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme04g01727 313 SMART WRKY_cls 159 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme04g01727 313 MobiDBLite consensus disorder prediction 90 136 - -
Cme04g01727 313 Pfam WRKY DNA -binding domain 160 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme04g01727 313 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 12 310 IPR044810 GO:0003700
Cme04g01727 313 ProSiteProfiles WRKY domain profile. 154 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01579 Cme-Chr3:24784408 Cme04g01727 Cme-Chr4:24790872 2.88E-29 dispersed
Cme03g01580 Cme-Chr3:24792780 Cme04g01727 Cme-Chr4:24790872 5.27E-67 dispersed
Cme04g01727 Cme-Chr4:24790872 Cme08g00421 Cme-Chr8:2563779 1.34E-30 dispersed
Cme04g01727 Cme-Chr4:24790872 Cme07g00117 Cme-Chr7:778340 4.30E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41208 PF03106 WRKY 4.40E-23 CL0274 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01727 - - csv:101218366 557.37