Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01728 TTCCCTCTTTCAAATCTTCTCCTCTTTCTTTTCATTATCCAATCCCCCTCTCTCTCCCCCTCACCTCACTCATCCACCCACTTCCTATTTTCTTATCAATGTTCAGACTCCTTGTTCCAAACTCTCTTTTTACTCTTTCTCGAACATAATTCGGACATGGCGGGTGAGGCGGCGCAGGTTAGGAATGTTCTTTTTGGGAAATATGAAATGGGTCGGCTTTTGGGGAAAGGGACCTTTGCGAAGGTCTACTATGGAAGAAACGTGATGACCCACGAGAGTGTTGCCATTAAAGTGATTCTCAAGGACAGGGTGAAGAAAGAGGGGCTTCTTGAGCAAATCCGGCGAGAAATTTCTGTTATGGGGTTGGTTCGTCATCCTCATATTGTGGAATTGAAAGAAGTTATGGCGACGAAATCGAAGGTGTATTTTGTGATGGAGTATGTTAATGGAGGCGAACTGTTTGTGAAGTTGTCTCAACAAGGGAAATTGACTGAGGATGGAGCAAGAAATTATTTTCAACAGCTTATCTCTGCCGTGGACTTTTGCCATAGCCGTGGTGTCTCTCACCGTGATTTGAAGCCTGAGAATCTCCTTCTTGACCAGAATGGGAATTTGAAGGTTTCTGATTTTGGCCTCTCTGCGCTGCCGGAGCAGCTCCGGATTGATGGTTTGCTTCACACACGGTGTGGAACTCCGGCTTATGTGGCGCCTGAGGTGCTCAGAAAGAGAGGATACGATGGCGCCAAGGCGGATATTTGGTCTTGTGGGGTGATTTTGTTTGTGTTGCTTGCTGGGACTTTGCCATTTCGAGCTGATAATGCGATGAAGTTGTATAGGAAGATTTTCAAGGCGGAGTTTGAGTTTCCTCCATGGTTTTCTTCAGAAGCCAAGGAAATGGTGTCTAAGCTTCTGGTTGTTGATCCTCAAAAGAGAGCTTCAATGGTTGAGATAATGCATAGTCCTTGGTTTCAAGAGGGCTTCACAAAGCCAGTTTCATTCCTTGAGAAAGATGAATTCAACAATGAATTCTCTGAATTGGCTAATCCCAAGTTGTTGTCATCTTCTCCTCCTTTTTACAATGCATTTGAATTCATTTCCTCAATGTCCTCTGGTTTTGACTTGTCTAGTTTGTTTGAAAGCAAGAAGAAACAAGGCTCTATTTTCACTTCAAAATGCCCTGCTTCAGCCATTATAGCCAAGCTTCAATCTCTGGCCGTGAAGCTCAACTTCAAAGCTACTAACCTAAGGGAGTTCAAGGTGAGACTGCAGGCCAAGGAGGAGGGGAGGAAAGGGAAGTTGACAGTGACCGCAGAGGTTCACGAGGTGGCCCCGGAGCTGGCAGTGGTTGAGTTCTCGAAGTCGGCCGGCGACACTTTGGAATACAACAAGTTCTGTGAGAAGGACGTGAGGCCCGCATTGAAAGACATAGTTTGGAGCTGGCAAGGAGAAAATGAAGTGCCTTTAACAGTGGATTCTTTGCAAAATGACCATTGA 1494 45.45 FPLSNLLLFLFIIQSPSLSPSPHSSTHFLFSYQCSDSLFQTLFLLFLEHNSDMAGEAAQVRNVLFGKYEMGRLLGKGTFAKVYYGRNVMTHESVAIKVILKDRVKKEGLLEQIRREISVMGLVRHPHIVELKEVMATKSKVYFVMEYVNGGELFVKLSQQGKLTEDGARNYFQQLISAVDFCHSRGVSHRDLKPENLLLDQNGNLKVSDFGLSALPEQLRIDGLLHTRCGTPAYVAPEVLRKRGYDGAKADIWSCGVILFVLLAGTLPFRADNAMKLYRKIFKAEFEFPPWFSSEAKEMVSKLLVVDPQKRASMVEIMHSPWFQEGFTKPVSFLEKDEFNNEFSELANPKLLSSSPPFYNAFEFISSMSSGFDLSSLFESKKKQGSIFTSKCPASAIIAKLQSLAVKLNFKATNLREFKVRLQAKEEGRKGKLTVTAEVHEVAPELAVVEFSKSAGDTLEYNKFCEKDVRPALKDIVWSWQGENEVPLTVDSLQNDH 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24822090 24823839 + MELO3C026741.2.1 Cme04g01728 325989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01728 497 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Cme04g01728 497 Pfam NAF domain 356 412 IPR004041 GO:0007165
Cme04g01728 497 ProSiteProfiles NAF domain profile. 354 379 IPR018451 GO:0007165
Cme04g01728 497 Pfam Protein kinase domain 68 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g01728 497 PANTHER - 61 486 - -
Cme04g01728 497 SUPERFAMILY Protein kinase-like (PK-like) 64 337 IPR011009 -
Cme04g01728 497 ProSitePatterns Protein kinases ATP-binding region signature. 74 106 IPR017441 GO:0005524
Cme04g01728 497 SMART serkin_6 68 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g01728 497 ProSiteProfiles Protein kinase domain profile. 68 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g01728 497 Gene3D Kinase associated domain 1, KA1 359 479 - -
Cme04g01728 497 CDD STKc_SnRK3 67 322 - -
Cme04g01728 497 Gene3D Transferase(Phosphotransferase) domain 1 59 358 - -
Cme04g01728 497 CDD CIPK_C 360 474 - -
Cme04g01728 497 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 25-RELATED 61 486 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01728 Cme-Chr4:24822090 Cme05g01830 Cme-Chr5:27161860 9.38E-170 dispersed
Cme06g00242 Cme-Chr6:1452860 Cme04g01728 Cme-Chr4:24822090 8.88E-62 dispersed
Cme04g01728 Cme-Chr4:24822090 Cme07g00116 Cme-Chr7:765253 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64820 PF00069 Pkinase 1.10E-76 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01728 - - csv:101218600 857.055