Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme04g01730 | ATGCCGATCGACACCACCGCAGTATCCGGTGAAATTGTGTGTGTCACCGGAGCCGGAGGCTTCATTGCTTCATGGCTTGTAAAGCTTCTTCTTGAGAAGGGATACACTGTTAGAGGAACCGTTAGAAATCCAGATGACCAAAAGAACGCTCATTTGAGAAACTTAGAAGGAGCTAAGGAGAGGCTTTCTTTGTTTAGTGCTGATCTTCTTGATTTTGAAAGCCTTCAAGCAGCCATTATGGGTTGTCATGGCATTTTTCACACTGCGTCTCCAGTCACCGATGACCCTGACAAAGTGGAACAAGCAATAATCGGAACAAAGAACGTCATGACCGCCGCTGCTGAAGCAAATGTTCGACGAGTGGTGTTCACATCGTCGATTGGCACCGTCTACATGAACCCAAACAGAAGCCCGGACACGGTGGTGGATGAGTCTTGTTGGAGTGACCTTGAGTTTTGCAAGAATACAAAGAATTGGTATTGTTATGCAAAGACAAAGGCAGAACAAGCAGCATGGGAAGTGGCAAAAGAAAAAGGAATTGATCTTGTGGTGGTGAATCCAATGTTGGTATTGGGACCAATGTTGCAGGAAGGAGTGAATGCAAGTGTTGTTCATATAATGAAATATTTGACAGGATCAGCAAAGACATATGTAAATGCAGTACAAGGTTATGTTGATGTTAAGGATGTTGCTAAAGCTCATCTTTTGGTCTATGAAACTCCCTCAGCCTCAGGAAGATATATTTGCGTTGAGAGTATGCTTCATCGTGGTGAATTGGTTGAAATTCTTGCCAATTTCTTCCCTCAATATCCGCTTCCCACCAAGTGTTCTGATGAGGTAAACCCAAGAAAGAAACCTTACAAATACACAGTTGAGAAGGTGAAGTCATTGGGAATGGAATTCACACCAATTAAACAATGTATTTACGAAACTGTGAAGAGCCTGCAAGAAAAGGGCCATCTTCCACTTCCCACCTCCCAAATTCAACATTAA | 993 | 43.1 | MPIDTTAVSGEIVCVTGAGGFIASWLVKLLLEKGYTVRGTVRNPDDQKNAHLRNLEGAKERLSLFSADLLDFESLQAAIMGCHGIFHTASPVTDDPDKVEQAIIGTKNVMTAAAEANVRRVVFTSSIGTVYMNPNRSPDTVVDESCWSDLEFCKNTKNWYCYAKTKAEQAAWEVAKEKGIDLVVVNPMLVLGPMLQEGVNASVVHIMKYLTGSAKTYVNAVQGYVDVKDVAKAHLLVYETPSASGRYICVESMLHRGELVEILANFFPQYPLPTKCSDEVNPRKKPYKYTVEKVKSLGMEFTPIKQCIYETVKSLQEKGHLPLPTSQIQH | 330 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 24865012 | 24866612 | - | MELO3C026745.2.1 | Cme04g01730 | 325991 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme04g01730 | 330 | CDD | FR_SDR_e | 13 | 298 | - | - | |
| Cme04g01730 | 330 | Pfam | NAD dependent epimerase/dehydratase family | 13 | 243 | IPR001509 | - | |
| Cme04g01730 | 330 | PANTHER | NAD DEPENDENT EPIMERASE/DEHYDRATASE | 7 | 324 | - | - | |
| Cme04g01730 | 330 | Gene3D | - | 4 | 330 | - | - | |
| Cme04g01730 | 330 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 6 | 316 | IPR036291 | - | |
| Cme04g01730 | 330 | PANTHER | CINNAMOYL-COA REDUCTASE-LIKE PROTEIN | 7 | 324 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme01g02556 | Cme-Chr1:33487740 | Cme04g01730 | Cme-Chr4:24865012 | 0 | dispersed | |
| Cme04g01685 | Cme-Chr4:24140189 | Cme04g01730 | Cme-Chr4:24865012 | 3.28E-173 | dispersed | |
| Cme04g01686 | Cme-Chr4:24147441 | Cme04g01730 | Cme-Chr4:24865012 | 0 | dispersed | |
| Cme04g01730 | Cme-Chr4:24865012 | Cme05g00170 | Cme-Chr5:1150440 | 5.17E-96 | dispersed | |
| Cme04g01880 | Cme-Chr4:26495277 | Cme04g01730 | Cme-Chr4:24865012 | 3.55E-42 | dispersed | |
| Cme07g00367 | Cme-Chr7:2371857 | Cme04g01730 | Cme-Chr4:24865012 | 1.42E-16 | dispersed | |
| Cme11g00568 | Cme-Chr11:6211042 | Cme04g01730 | Cme-Chr4:24865012 | 1.25E-37 | dispersed | |
| Cme04g01730 | Cme-Chr4:24865012 | Cme04g01731 | Cme-Chr4:24876086 | 1.72E-171 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme04g01730 | K09753 | - | csv:116401668 | 637.106 |