Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01735 ATGGCTGGAGACACTCCCGACGGCCACTCAAGCAATCCTCCTTCCACGCCTGATTCCCCCACCACCTCCGCCGGTTTCGAAACAGATCAGCTTCCTCATCTCAGCCAAACTTCCGACAACTACCCCGATGAGGACGAAGCCGCCGTCGATCCTCACATCCTTCCCGACGAGCCTGACCCCGATGAAGAGGAGGAAGGAGAGGATCTCTACCACGACAATTTCTTGGACGATTACCGAAGGATGGACGAGCATGACCAGTACGAGTCCTTGGGCCTCGACGATTCGTTAGAGGATGAGAGGGATTTTGATCAGATTATAAGGGACCGACGAGCTGCTGAGATAGAACTGGAAAATCGGGATGCTCAGTTCAACCGTCGGAAGCTTCCTGAACTCTTACATGATCATGACTCTGAGGACGACAACTACAGGCCTTCAAAAAGATCAAGAGCTGATTTTCGGCCTCCAGCTGGTGCAAGAGGCTATGATGACATTGATGGCATGCAAAGCTCTCCAGGTAGATCACAGAGGGAAAACTCGCGTGATGATGTGCCAATGACAGATCAATCTGTTGATGACCAATATGAGGATGAAGATGATGATGAAAATGAGAATGAGATGTATCGTGTTCAAGGGCCACTTAGAGAACATGTTACCATGGATGCGGTTCGGCGCTTTATAGGCAAAAAATTTAAGAAATTCTTGGAAACATATGTGAATCCAAAGAGTGGAAATGGTGAGCTTGAGTACATGCGATTGATAAATGAGATGGTGTTAGCCAATAGGTGCAGTTTGGAGATAGATTACAAACAGTTCATCTTTGTTCATCCAAATATAGCAATCTGGTTGGCTGATGCACCCCAGCCCGTCTTAGAAGTTATGGAAGATGTTGCAAAGAAGGTTGTCTTTGACATACATCCAAACTACAAAAATATCCACCAAAAGATCTATGTTCGGATTAATAATTTACCAGTCTATGATCAGATTCGAAATATAAGGCAAATTCATTTAAATACCATGATTCGTATTGGGGGTGTAGTGACCCGACGCTCTGGTGTCTTCCCCCAGTTGCAGCAGGTGAAGTATGATTGTAATAAATGTGGCACAATATTGGGACCTTTTTTTCAGAATTCTTATTCAGAGGTCAAGGTTGGTTCTTGTCCTGAATGCCAATCGAAAGGGCCATTCACTGTAAATGTTGAGCAGACTGTGTATAGGAATTATCAAAAGCTAACCCTCCAAGAAAGCCCAGGAATTGTGCCAGCTGGTCGACTTCCTAGGTACAAGGAAGTGATACTATTGAATGATCTAATTGATTGTGCTCGTCCTGGCGAAGAAATTGAAGTCACAGGCATTTATACAAATAATTTTGACTTATCATTGAACACAAAGAACGGCTTTCCTGTATTTTCCACTGTTGTTGAAGCAAATTATATTACCAAGAAGCAAGATCTTTTTTCTGCTTACAAGATTACCCAGGAAGACAAGGAAGAGATTGAGAAGTTGGCTAAAGACCCTAGAATTGGAGAAAGGATAATCAAGTCCATTGCACCGTCAATCTATGGTCACGAAGACATAAAAACAGCAATTGCTCTTGCAATGTTTGGAGGTCAAGAAAAAAATGTTGAAGGGAAACACCGATTGCGAGGCGATATCAATGTTCTTTTATTAGGTGATCCTGGCACAGCCAAATCACAATTTCTCAAGTATGTTGAGAAAACTGGGCATAGAGCAGTGTACACCACAGGGAAAGGAGCTTCAGCTGTAGGACTGACAGCAGCAGTGCATAAGGATCCTGTCACAAGGGAGTGGACTCTTGAAGGAGGTGCCCTTGTATTAGCCGATAGAGGAATTTGTCTTATTGATGAATTTGACAAAATGAATGATCAGGACAGGGTGAGTATCCACGAGGCAATGGAGCAGCAGAGTATTAGCATATCAAAAGCTGGAATAGTCACTTCCCTTCAAGCCAGATGTTCGGTCATTTCTGCTGCCAATCCAATTGGGGGAAGGTACGACTCCTCAAAAACATTTTCACAGAATGTTGAGCTGACCGATCCTATCATTTCTCGATTTGACATCCTCTGCGTTGTTAAGGATGTGGTAGACTCTGTAGCAGATGAGATGCTTGCTACGTTTGTGGTTGATAGTCATTTCAAATCACAGCCAAAGGGAGGCATTCTCGATGACAAGTCTATAAATGAATCTCAGGAGGACAGTCAAGACACTGCAAGGCCACTGGATCCGGAGGTGCTCCCCCAAGATCTGTTGAGGAAGTACATAACTTATTCCAAGTTGAATGTTTTTCCAAGGTTGCACGATGCTGATTTGGACAAGTTAACACATGTCTATGCAGAATTACGAAGGGAATCTTCTCATGGGCAAGGAGTTCCGATTGCAGTTAGGCACATAGAGTCAATGATACGCATGTCTGAAGCACATGCAAGAATGCACCTTAGACAACACGTCACACAAGAAGATGTTGATATGGCAATTCGTGTATTACTTGATTCCTTCATTTCGACCCAGAAATTTGGAGTGCAGAAAGCTCTGCAGAAGAGCTTCAGAAAGTATATGACTTTCAAGAAGGATTACAATGAACTGCTGCTATATCTTCTCCGAGAGCTTGTGAAGAATGCACTTCACTTTGAGGAAATTGTTCGTGGATCCACATCAGAGCTTACCCAAATCAATGTGAAATTGGAAGACCTACAAAGCAAGGCACAAGAGCATGAAATTTATGATCTGAAACCATTCTTCAACAGCACACATTTTTCAAATGCTAATTTTGTGCTAGATGAAGAGCATGGACTAATCAGGCATAACCTTGCCAGATGA 2835 43.25 MAGDTPDGHSSNPPSTPDSPTTSAGFETDQLPHLSQTSDNYPDEDEAAVDPHILPDEPDPDEEEEGEDLYHDNFLDDYRRMDEHDQYESLGLDDSLEDERDFDQIIRDRRAAEIELENRDAQFNRRKLPELLHDHDSEDDNYRPSKRSRADFRPPAGARGYDDIDGMQSSPGRSQRENSRDDVPMTDQSVDDQYEDEDDDENENEMYRVQGPLREHVTMDAVRRFIGKKFKKFLETYVNPKSGNGELEYMRLINEMVLANRCSLEIDYKQFIFVHPNIAIWLADAPQPVLEVMEDVAKKVVFDIHPNYKNIHQKIYVRINNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGTILGPFFQNSYSEVKVGSCPECQSKGPFTVNVEQTVYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFSTVVEANYITKKQDLFSAYKITQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHEDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGHRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVISAANPIGGRYDSSKTFSQNVELTDPIISRFDILCVVKDVVDSVADEMLATFVVDSHFKSQPKGGILDDKSINESQEDSQDTARPLDPEVLPQDLLRKYITYSKLNVFPRLHDADLDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIVRGSTSELTQINVKLEDLQSKAQEHEIYDLKPFFNSTHFSNANFVLDEEHGLIRHNLAR 944
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24907917 24913720 + MELO3C026749.2.1 Cme04g01735 325996

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01735 944 ProSitePatterns MCM family signature. 616 624 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cme04g01735 944 MobiDBLite consensus disorder prediction 725 747 - -
Cme04g01735 944 ProSiteProfiles MCM family domain profile. 507 713 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme04g01735 944 MobiDBLite consensus disorder prediction 188 203 - -
Cme04g01735 944 CDD MCM2 510 837 - -
Cme04g01735 944 MobiDBLite consensus disorder prediction 8 42 - -
Cme04g01735 944 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 337 354 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cme04g01735 944 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 360 372 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cme04g01735 944 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 395 409 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cme04g01735 944 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 456 467 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cme04g01735 944 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 471 482 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cme04g01735 944 MobiDBLite consensus disorder prediction 1 82 - -
Cme04g01735 944 Pfam MCM OB domain 327 454 IPR033762 -
Cme04g01735 944 PRINTS Mini-chromosome maintenance (MCM) protein family signature 548 563 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme04g01735 944 PRINTS Mini-chromosome maintenance (MCM) protein family signature 608 622 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme04g01735 944 PRINTS Mini-chromosome maintenance (MCM) protein family signature 636 649 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme04g01735 944 PRINTS Mini-chromosome maintenance (MCM) protein family signature 660 672 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme04g01735 944 PRINTS Mini-chromosome maintenance (MCM) protein family signature 687 695 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme04g01735 944 Pfam MCM N-terminal domain 228 321 IPR027925 -
Cme04g01735 944 Gene3D - 220 324 - -
Cme04g01735 944 MobiDBLite consensus disorder prediction 117 158 - -
Cme04g01735 944 MobiDBLite consensus disorder prediction 117 203 - -
Cme04g01735 944 Gene3D - 487 861 IPR027417 -
Cme04g01735 944 MobiDBLite consensus disorder prediction 730 744 - -
Cme04g01735 944 MobiDBLite consensus disorder prediction 56 71 - -
Cme04g01735 944 Gene3D - 355 405 - -
Cme04g01735 944 SMART mcm 324 839 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cme04g01735 944 Pfam Mini-chromosome maintenance protein 2 44 199 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cme04g01735 944 Gene3D - 328 453 IPR012340 -
Cme04g01735 944 Pfam MCM AAA-lid domain 754 838 IPR041562 -
Cme04g01735 944 SUPERFAMILY Nucleic acid-binding proteins 229 476 IPR012340 -
Cme04g01735 944 Pfam MCM P-loop domain 495 717 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme04g01735 944 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 517 841 IPR027417 -
Cme04g01735 944 PANTHER DNA HELICASE 144 937 - -
Cme04g01735 944 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 144 937 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01735 K02540 MCM2; DNA replication licensing factor MCM2 [EC:5.6.2.3] - csv:101219546 1785.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00219 Cme-Chr1:1554921 Cme04g01735 Cme-Chr4:24907917 3.70E-59 dispersed
Cme04g01735 Cme-Chr4:24907917 Cme08g00150 Cme-Chr8:1080036 1.28E-101 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme08g00074 . 94 784 Core DNA Replication Machinery Family AT4G14700 66.2 6.8e-266 913.7
Cme08g00074 . 94 784 Core DNA Replication Machinery Family AT4G12620 68.1 8.9e-274 939.9
Cme03g02018 . 2 360 Core DNA Replication Machinery Family AT2G37560 65.7 1.7e-141 499.2
Cme10g01189 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.0 5.7e-155 544.3
Cme11g02167 . 3 536 Core DNA Replication Machinery Family AT4G29910 59.1 4.1e-177 618.2
Cme05g00896 . 1 277 Core DNA Replication Machinery Family AT1G26840 63.2 1.7e-91 332.8
Cme01g01521 . 4 800 Core DNA Replication Machinery Family AT1G79150 58.0 3.0e-245 845.1
Cme04g01735 . 1 939 Core DNA Replication Machinery Family AT1G44900 73.8 0.0e+00 1311.6
Cme08g00150 . 1 575 Core DNA Replication Machinery Family AT5G46280 80.7 3.0e-268 921.0
Cme01g01361 . 80 830 Core DNA Replication Machinery Family AT2G16440 77.5 0.0e+00 1146.7
Cme05g01856 . 1 742 Core DNA Replication Machinery Family AT2G07690 76.2 0.0e+00 1088.6
Cme08g00004 . 14 785 Core DNA Replication Machinery Family AT5G44635 69.1 0.0e+00 1094.7
Cme01g02199 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.1 0.0e+00 1217.6
Cme11g01369 . 12 458 Core DNA Replication Machinery Family AT2G29680 53.3 1.9e-136 483.0
Cme11g01369 . 22 427 Core DNA Replication Machinery Family AT1G07270 52.8 1.7e-120 429.9
Cme01g01799 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.2 2.5e-257 884.8
Cme04g02557 . 12 792 Core DNA Replication Machinery Family AT3G09660 73.0 0.0e+00 1098.2
Cme01g00219 . 10 477 Core DNA Replication Machinery Family AT2G14050 76.8 2.9e-211 731.9
Cme01g02620 . 1 200 Core DNA Replication Machinery Family AT1G80190 66.3 4.0e-74 274.6
Cme07g01243 . 1 145 Core DNA Replication Machinery Family AT3G12530 71.0 2.7e-59 224.9
Cme03g00250 . 118 312 Core DNA Replication Machinery Family AT1G19080 54.0 2.5e-46 182.2
Cme03g00250 . 118 312 Core DNA Replication Machinery Family AT3G55490 54.0 2.5e-46 182.2
Cme06g00165 . 1 188 Core DNA Replication Machinery Family AT5G49010 55.3 3.3e-46 181.8
Cme11g00335 . 9 1546 Core DNA Replication Machinery Family AT5G67100 60.7 0.0e+00 1761.5
Cme12g01926 . 3 622 Core DNA Replication Machinery Family AT1G67630 62.3 5.3e-218 754.2
Cme11g02327 . 8 412 Core DNA Replication Machinery Family AT1G67320 64.3 9.1e-165 577.0
Cme09g00110 . 1 118 Core DNA Replication Machinery Family AT5G41880 75.4 1.9e-52 203.8
Cme08g01142 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.6 0.0e+00 1794.6
Cme04g02239 . 1 495 Core DNA Replication Machinery Family AT2G42120 55.3 4.4e-150 528.1
Cme11g02327 . 8 412 Core DNA Replication Machinery Family AT1G67320 64.3 9.1e-165 577.0
Cme09g01463 . 34 158 Core DNA Replication Machinery Family AT1G09815 60.8 6.3e-38 153.7
Cme11g01900 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.2 0.0e+00 2984.5
Cme09g00647 . 7 1305 Core DNA Replication Machinery Family AT1G08260 60.8 0.0e+00 1701.8
Cme11g01900 . 25 2206 Core DNA Replication Machinery Family AT2G27120 67.5 0.0e+00 2938.3
Cme09g00647 . 29 1305 Core DNA Replication Machinery Family AT2G27120 59.2 0.0e+00 1620.1
Cme12g02044 . 7 487 Core DNA Replication Machinery Family AT5G22110 68.9 1.4e-192 669.5
Cme05g00231 . 1 926 Core DNA Replication Machinery Family AT5G22010 64.0 2.1e-308 1055.0
Cme06g02668 . 1 331 Core DNA Replication Machinery Family AT1G63160 91.0 1.6e-173 605.5
Cme08g01938 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.3 1.0e-178 622.9
Cme07g00817 . 1 290 Core DNA Replication Machinery Family AT1G21690 80.4 2.7e-128 455.3
Cme03g00527 . 39 254 Core DNA Replication Machinery Family AT1G77470 78.3 6.1e-89 324.7
Cme06g02413 . 32 705 Core DNA Replication Machinery Family AT2G06510 50.7 1.3e-197 686.4
Cme02g01827 . 1 634 Core DNA Replication Machinery Family AT5G08020 66.3 2.8e-240 828.2
Cme06g02413 . 10 814 Core DNA Replication Machinery Family AT5G45400 52.8 7.2e-234 807.4
Cme02g01827 . 1 629 Core DNA Replication Machinery Family AT5G61000 64.3 9.1e-234 806.6
Cme06g02413 . 5 800 Core DNA Replication Machinery Family AT4G19130 53.9 9.9e-230 793.5
Cme04g02390 . 37 142 Core DNA Replication Machinery Family AT4G18590 65.1 1.6e-37 152.1
Cme02g00001 . 1 377 Core DNA Replication Machinery Family AT5G26680 85.0 7.7e-181 630.2
Cme07g01888 . 8 297 Core DNA Replication Machinery Family AT2G25100 68.3 3.7e-115 411.4
Cme11g01841 . 1 849 Core DNA Replication Machinery Family AT1G08130 62.9 1.0e-287 986.1
Cme11g01841 . 201 849 Core DNA Replication Machinery Family AT1G49250 64.2 9.5e-234 806.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008086 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g01735 Cme_Chr04 FPKM 17.706348 18.838579 12.135135 9.550455 8.013792 6.835531 5.773703 0.355855 1.042954 0.953207