Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01735 ATGGCTGGAGACACTCCCGACGGCCACTCAAGCAATCCTCCTTCCACGCCTGATTCCCCCACCACCTCCGCCGGTTTCGAAACAGATCAGCTTCCTCATCTCAGCCAAACTTCCGACAACTACCCCGATGAGGACGAAGCCGCCGTCGATCCTCACATCCTTCCCGACGAGCCTGACCCCGATGAAGAGGAGGAAGGAGAGGATCTCTACCACGACAATTTCTTGGACGATTACCGAAGGATGGACGAGCATGACCAGTACGAGTCCTTGGGCCTCGACGATTCGTTAGAGGATGAGAGGGATTTTGATCAGATTATAAGGGACCGACGAGCTGCTGAGATAGAACTGGAAAATCGGGATGCTCAGTTCAACCGTCGGAAGCTTCCTGAACTCTTACATGATCATGACTCTGAGGACGACAACTACAGGCCTTCAAAAAGATCAAGAGCTGATTTTCGGCCTCCAGCTGGTGCAAGAGGCTATGATGACATTGATGGCATGCAAAGCTCTCCAGGTAGATCACAGAGGGAAAACTCGCGTGATGATGTGCCAATGACAGATCAATCTGTTGATGACCAATATGAGGATGAAGATGATGATGAAAATGAGAATGAGATGTATCGTGTTCAAGGGCCACTTAGAGAACATGTTACCATGGATGCGGTTCGGCGCTTTATAGGCAAAAAATTTAAGAAATTCTTGGAAACATATGTGAATCCAAAGAGTGGAAATGGTGAGCTTGAGTACATGCGATTGATAAATGAGATGGTGTTAGCCAATAGGTGCAGTTTGGAGATAGATTACAAACAGTTCATCTTTGTTCATCCAAATATAGCAATCTGGTTGGCTGATGCACCCCAGCCCGTCTTAGAAGTTATGGAAGATGTTGCAAAGAAGGTTGTCTTTGACATACATCCAAACTACAAAAATATCCACCAAAAGATCTATGTTCGGATTAATAATTTACCAGTCTATGATCAGATTCGAAATATAAGGCAAATTCATTTAAATACCATGATTCGTATTGGGGGTGTAGTGACCCGACGCTCTGGTGTCTTCCCCCAGTTGCAGCAGGTGAAGTATGATTGTAATAAATGTGGCACAATATTGGGACCTTTTTTTCAGAATTCTTATTCAGAGGTCAAGGTTGGTTCTTGTCCTGAATGCCAATCGAAAGGGCCATTCACTGTAAATGTTGAGCAGACTGTGTATAGGAATTATCAAAAGCTAACCCTCCAAGAAAGCCCAGGAATTGTGCCAGCTGGTCGACTTCCTAGGTACAAGGAAGTGATACTATTGAATGATCTAATTGATTGTGCTCGTCCTGGCGAAGAAATTGAAGTCACAGGCATTTATACAAATAATTTTGACTTATCATTGAACACAAAGAACGGCTTTCCTGTATTTTCCACTGTTGTTGAAGCAAATTATATTACCAAGAAGCAAGATCTTTTTTCTGCTTACAAGATTACCCAGGAAGACAAGGAAGAGATTGAGAAGTTGGCTAAAGACCCTAGAATTGGAGAAAGGATAATCAAGTCCATTGCACCGTCAATCTATGGTCACGAAGACATAAAAACAGCAATTGCTCTTGCAATGTTTGGAGGTCAAGAAAAAAATGTTGAAGGGAAACACCGATTGCGAGGCGATATCAATGTTCTTTTATTAGGTGATCCTGGCACAGCCAAATCACAATTTCTCAAGTATGTTGAGAAAACTGGGCATAGAGCAGTGTACACCACAGGGAAAGGAGCTTCAGCTGTAGGACTGACAGCAGCAGTGCATAAGGATCCTGTCACAAGGGAGTGGACTCTTGAAGGAGGTGCCCTTGTATTAGCCGATAGAGGAATTTGTCTTATTGATGAATTTGACAAAATGAATGATCAGGACAGGGTGAGTATCCACGAGGCAATGGAGCAGCAGAGTATTAGCATATCAAAAGCTGGAATAGTCACTTCCCTTCAAGCCAGATGTTCGGTCATTTCTGCTGCCAATCCAATTGGGGGAAGGTACGACTCCTCAAAAACATTTTCACAGAATGTTGAGCTGACCGATCCTATCATTTCTCGATTTGACATCCTCTGCGTTGTTAAGGATGTGGTAGACTCTGTAGCAGATGAGATGCTTGCTACGTTTGTGGTTGATAGTCATTTCAAATCACAGCCAAAGGGAGGCATTCTCGATGACAAGTCTATAAATGAATCTCAGGAGGACAGTCAAGACACTGCAAGGCCACTGGATCCGGAGGTGCTCCCCCAAGATCTGTTGAGGAAGTACATAACTTATTCCAAGTTGAATGTTTTTCCAAGGTTGCACGATGCTGATTTGGACAAGTTAACACATGTCTATGCAGAATTACGAAGGGAATCTTCTCATGGGCAAGGAGTTCCGATTGCAGTTAGGCACATAGAGTCAATGATACGCATGTCTGAAGCACATGCAAGAATGCACCTTAGACAACACGTCACACAAGAAGATGTTGATATGGCAATTCGTGTATTACTTGATTCCTTCATTTCGACCCAGAAATTTGGAGTGCAGAAAGCTCTGCAGAAGAGCTTCAGAAAGTATATGACTTTCAAGAAGGATTACAATGAACTGCTGCTATATCTTCTCCGAGAGCTTGTGAAGAATGCACTTCACTTTGAGGAAATTGTTCGTGGATCCACATCAGAGCTTACCCAAATCAATGTGAAATTGGAAGACCTACAAAGCAAGGCACAAGAGCATGAAATTTATGATCTGAAACCATTCTTCAACAGCACACATTTTTCAAATGCTAATTTTGTGCTAGATGAAGAGCATGGACTAATCAGGCATAACCTTGCCAGATGA 2835 43.25 MAGDTPDGHSSNPPSTPDSPTTSAGFETDQLPHLSQTSDNYPDEDEAAVDPHILPDEPDPDEEEEGEDLYHDNFLDDYRRMDEHDQYESLGLDDSLEDERDFDQIIRDRRAAEIELENRDAQFNRRKLPELLHDHDSEDDNYRPSKRSRADFRPPAGARGYDDIDGMQSSPGRSQRENSRDDVPMTDQSVDDQYEDEDDDENENEMYRVQGPLREHVTMDAVRRFIGKKFKKFLETYVNPKSGNGELEYMRLINEMVLANRCSLEIDYKQFIFVHPNIAIWLADAPQPVLEVMEDVAKKVVFDIHPNYKNIHQKIYVRINNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGTILGPFFQNSYSEVKVGSCPECQSKGPFTVNVEQTVYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFSTVVEANYITKKQDLFSAYKITQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHEDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGHRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVISAANPIGGRYDSSKTFSQNVELTDPIISRFDILCVVKDVVDSVADEMLATFVVDSHFKSQPKGGILDDKSINESQEDSQDTARPLDPEVLPQDLLRKYITYSKLNVFPRLHDADLDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIVRGSTSELTQINVKLEDLQSKAQEHEIYDLKPFFNSTHFSNANFVLDEEHGLIRHNLAR 944
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24907917 24913720 + MELO3C026749.2.1 Cme04g01735 325996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01735 944 ProSitePatterns MCM family signature. 616 624 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cme04g01735 944 MobiDBLite consensus disorder prediction 725 747 - -
Cme04g01735 944 ProSiteProfiles MCM family domain profile. 507 713 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme04g01735 944 MobiDBLite consensus disorder prediction 188 203 - -
Cme04g01735 944 CDD MCM2 510 837 - -
Cme04g01735 944 MobiDBLite consensus disorder prediction 8 42 - -
Cme04g01735 944 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 337 354 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cme04g01735 944 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 360 372 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cme04g01735 944 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 395 409 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cme04g01735 944 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 456 467 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cme04g01735 944 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 471 482 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cme04g01735 944 MobiDBLite consensus disorder prediction 1 82 - -
Cme04g01735 944 Pfam MCM OB domain 327 454 IPR033762 -
Cme04g01735 944 PRINTS Mini-chromosome maintenance (MCM) protein family signature 548 563 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme04g01735 944 PRINTS Mini-chromosome maintenance (MCM) protein family signature 608 622 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme04g01735 944 PRINTS Mini-chromosome maintenance (MCM) protein family signature 636 649 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme04g01735 944 PRINTS Mini-chromosome maintenance (MCM) protein family signature 660 672 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme04g01735 944 PRINTS Mini-chromosome maintenance (MCM) protein family signature 687 695 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme04g01735 944 Pfam MCM N-terminal domain 228 321 IPR027925 -
Cme04g01735 944 Gene3D - 220 324 - -
Cme04g01735 944 MobiDBLite consensus disorder prediction 117 158 - -
Cme04g01735 944 MobiDBLite consensus disorder prediction 117 203 - -
Cme04g01735 944 Gene3D - 487 861 IPR027417 -
Cme04g01735 944 MobiDBLite consensus disorder prediction 730 744 - -
Cme04g01735 944 MobiDBLite consensus disorder prediction 56 71 - -
Cme04g01735 944 Gene3D - 355 405 - -
Cme04g01735 944 SMART mcm 324 839 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cme04g01735 944 Pfam Mini-chromosome maintenance protein 2 44 199 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cme04g01735 944 Gene3D - 328 453 IPR012340 -
Cme04g01735 944 Pfam MCM AAA-lid domain 754 838 IPR041562 -
Cme04g01735 944 SUPERFAMILY Nucleic acid-binding proteins 229 476 IPR012340 -
Cme04g01735 944 Pfam MCM P-loop domain 495 717 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme04g01735 944 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 517 841 IPR027417 -
Cme04g01735 944 PANTHER DNA HELICASE 144 937 - -
Cme04g01735 944 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 144 937 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00219 Cme-Chr1:1554921 Cme04g01735 Cme-Chr4:24907917 3.70E-59 dispersed
Cme04g01735 Cme-Chr4:24907917 Cme08g00150 Cme-Chr8:1080036 1.28E-101 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01735 K02540 - csv:101219546 1785.77