Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01751 ATGGAGAAGAAGACTTATCCCATAGGTGAAGAATTTTATATTCTATATGAAGAGGTTGGGCAGGGTGTGAGCGCTGCAGTTCACCGTGCTCTTTGTAAACCTCTTAATGAAATCGTCGCCATCAAGATTCTCGATTTTGAGCGTGAGAATTGTGATCTGGCTAGCATTTATCGTGAAGTACAGACAATGATCTTGGTTGACCATCCGAATGTCCTTAAATCACACTGCTCCTTTGTCAATGGCCATAATTTGTGGATTGTTATGGCCTACATGTCTGGAGGTTCATGTCTTCACATATTGAAGGCTGCATATCCTGATGGCTTTGAGGAGGTCGTGATAGCAACAGTATTGCGAGAAGTATTGAAGGGAGTTGAATATCTTCATAATCATGGACATATACATCGGGATATAAAAGCAGGGAATGTTCTTATTGATTCACGTGGTGCAATCAAGCTAGGAGATTTTGGTGTTTCTGCTTGCCTTTTTGATTCAGGTGATCGACAACGTGTGAGGAATACATTCGTGGGGACACCTTGCTGGATGGCACCTGAGGTTATGGAGCAATTAAATGGTTATGACTTCAAGGCTGACATCTGGTCTTTTGCCATAACTGGGTTAGAGCTTGCCCATGGCCATGCTCCTTTCTCAAAATATCCTCCAATGAAGGTACTGATGATGACCTTGCAAAATGCACCTCCAGGGCTTGATTATGAGAGGGATAAAAAATTTTCAAAGTCTTTCAAGCAGATGATTGCTAGTTGCTTGGTAAAGGATCCTTCAAAACGACCTTCTGCGAGTAAGCTGCTAAAGCATTCATTTTTTAAGCAAGCCCGGTCAAATGATTACATTGCACGCACCCTTTTGGAAGGGCTACCTGTTCTTGGTGATCGTATAAAGGCACTTAAGAGAAAGGAAGAAGATATGCTTGCACAAAAGAAAATGCCAGATGGAAAAAAGGAAGAATTATCACAGAATGAATATAAACGAGGCATCAGTGGATGGAACTTCAATCTTGATGATCTAAAGGCTCAGGCATCTCTGATTCAGGAATTTGAAGAGTCAATTAGTGAAATCAATGAAGTAGGGAGCTCAAATTCATTGAATGCACTTGATGTGCAAGAAAAGAAATTACAAGGCCAAAATTCTTCAGAAATTTCAGATATTGAAGAGAATGCCTTGCTCCGGAGACAACCCTCCATGAAAGCAAACGACACAGTAAATGGTAAAAAGTCTATCAATGAATCAACAATTATTGGTTCTTGCTCCCAACATCATTCTTCACCCCGCCATGATAATCAAACTGAGAATGGCTCCAGTGAAGAGGTTAATTTGGAGAGCAGCAGAAGAATTATGGGGAATACTCCTAATACTATCCAACATAAAAGAAGTATTTCTTCTAATACCTGTATTCAACAAGAAGTCGGTGTGCCTCTGAACAGAAGAGAGAGTTACGAGACAGAAAAGAATGGTGCAAATGGAAGTCCTGCAACGGGAATGACTTCCCAGGCGGTAGATGATGTACTTTCTGATTCTCATTCTAAAGATCCCAAGTCATCATCAAGTCCAGCAATAATTGAAGAGGATCAGGATGAGAAAGCGAAGGCACCAGTTATTCAGCAGAAAGGGCGTTTCAAAGTTACTTCAGAGAGTGTCGATTTAGAAAAGGCAGCAGCATCCCCTATTCTGCAAAAAAGTCACAGTATGCAGGTTGGTAATTTTGAG 1722 41.0 MEKKTYPIGEEFYILYEEVGQGVSAAVHRALCKPLNEIVAIKILDFERENCDLASIYREVQTMILVDHPNVLKSHCSFVNGHNLWIVMAYMSGGSCLHILKAAYPDGFEEVVIATVLREVLKGVEYLHNHGHIHRDIKAGNVLIDSRGAIKLGDFGVSACLFDSGDRQRVRNTFVGTPCWMAPEVMEQLNGYDFKADIWSFAITGLELAHGHAPFSKYPPMKVLMMTLQNAPPGLDYERDKKFSKSFKQMIASCLVKDPSKRPSASKLLKHSFFKQARSNDYIARTLLEGLPVLGDRIKALKRKEEDMLAQKKMPDGKKEELSQNEYKRGISGWNFNLDDLKAQASLIQEFEESISEINEVGSSNSLNALDVQEKKLQGQNSSEISDIEENALLRRQPSMKANDTVNGKKSINESTIIGSCSQHHSSPRHDNQTENGSSEEVNLESSRRIMGNTPNTIQHKRSISSNTCIQQEVGVPLNRRESYETEKNGANGSPATGMTSQAVDDVLSDSHSKDPKSSSSPAIIEEDQDEKAKAPVIQQKGRFKVTSESVDLEKAAASPILQKSHSMQVGNFE 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25101881 25107577 - MELO3C024882.2.1 Cme04g01751 326012

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01751 574 Pfam Protein kinase domain 15 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g01751 574 ProSiteProfiles Protein kinase domain profile. 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g01751 574 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 570 - -
Cme04g01751 574 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 570 - -
Cme04g01751 574 Gene3D Transferase(Phosphotransferase) domain 1 94 327 - -
Cme04g01751 574 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
Cme04g01751 574 SMART serkin_6 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g01751 574 MobiDBLite consensus disorder prediction 488 507 - -
Cme04g01751 574 SUPERFAMILY Protein kinase-like (PK-like) 13 275 IPR011009 -
Cme04g01751 574 CDD STKc_OSR1_SPAK 13 274 - -
Cme04g01751 574 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Cme04g01751 574 MobiDBLite consensus disorder prediction 420 551 - -
Cme04g01751 574 MobiDBLite consensus disorder prediction 437 474 - -
Cme04g01751 574 MobiDBLite consensus disorder prediction 524 538 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01751 K08835 OXSR1, STK39; serine/threonine-protein kinase OSR1/STK39 [EC:2.7.11.1] - csv:101211076 1080.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01751 Cme-Chr4:25101881 Cme09g00387 Cme-Chr9:3475453 0 dispersed
Cme04g01751 Cme-Chr4:25101881 Cme06g00521 Cme-Chr6:3294460 1.58E-104 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme07g00580 . 1 693 MAP Kinase Kinase Kinase Kinase AT1G53165 63.1 1.2e-223 773.1
Cme07g00580 . 1 692 MAP Kinase Kinase Kinase Kinase AT3G15220 64.9 4.6e-231 797.7
Cme07g00580 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 51.8 2.9e-67 253.8
Cme09g00387 . 1 664 MAP Kinase Kinase Kinase Kinase AT5G14720 66.3 4.6e-252 867.5
Cme04g01751 . 3 551 MAP Kinase Kinase Kinase Kinase AT5G14720 51.4 1.1e-149 527.3
Cme06g00521 CCT 32 384 MAP Kinase Kinase Kinase Kinase AT5G14720 51.1 5.5e-96 349.0
Cme06g02394 . 7 719 MAP Kinase Kinase Kinase Kinase AT4G24100 64.8 1.7e-247 852.4
Cme04g01751 . 2 348 MAP Kinase Kinase Kinase Kinase AT4G24100 62.2 4.1e-129 459.1
Cme06g02394 . 11 720 MAP Kinase Kinase Kinase Kinase AT4G10730 65.3 5.4e-248 854.0
Cme04g01751 . 4 362 MAP Kinase Kinase Kinase Kinase AT1G70430 61.8 3.6e-131 465.7
Cme06g02394 . 3 369 MAP Kinase Kinase Kinase Kinase AT1G70430 57.3 2.4e-119 426.4
Cme04g01751 . 1 570 MAP Kinase Kinase Kinase Kinase AT1G79640 65.0 2.0e-199 692.6
Cme09g00387 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 58.9 5.7e-103 371.7
Cme04g01751 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.2 9.8e-87 317.8
Cme06g02394 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 51.5 1.3e-75 280.8
Cme06g00521 CCT 32 495 MAP Kinase Kinase Kinase Kinase AT4G14480 58.0 3.7e-142 501.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002203 1 4 3 2 3 1 2 1 1 2 1 1 3 2 2 3 2 5 2 1 2 2 2 2 1 1 2 4 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64821 PF00069 Pkinase 9.60E-59 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g01751 Cme_Chr04 FPKM 24.629755 26.713839 20.057766 20.026901 20.038052 20.373827 19.978504 22.565969 19.956778 19.600134