Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01757 CCATTCTTCGAACTCAGAAGAACAATAAACCTTCAAGAAAAAAGAAAGTTATCTGTTCTTCTTCTTCTTCTTCTTCTTCTTCAATTCGGCGTTGAAATGGGAATTGAAACAGTTGAGAATGACGTTATTTTCCGGTCAAAACTACCGGACATCTACATCCCAAATCATCTTCCTCTGCATTCCTACTGCCTACAAGAAAACGCCGCCAAAATAGGCCACCGAACTTGCTTAATCAACGGCGTTACCGGCGAATCCTTCACCTTCAACGACGTCGATCTCACTGCACGCAAGGTCGCCTCCGGATTAAACAAACTCGGCATTACAAAACGCGACGTAATCATGCTCCTCCTCCCAAATTCACCGGAGTTCGTCTTCGCTTTCCTCGGGGCCTCCCACCTCGGCGCAATCATGACGGCCGCAAACCCTTTCTTCACGGCAGCAGAAATCGCAAAGCAAGCAAAAGGATCAAAAGCAAAACTAATCATAACGCAATCGTCCTACTACGAAAAGTTGAAGGAAATAACAGAGGAATTGCCAGAGGTTAAAATCATGACCGTCGATTCTCCTCACGATGGTTGTTTATGGTTCGGTGATCTAATTAAAGCCGACGAAAGAGAGATTCCGAGGGTGGAAATCGACCCAGATGACGTGGTTGCGCTGCCGTATTCGTCGGGAACGACGGGATTGCCAAAGGGAGTGATGCTTACACATAAAAGTTTGGTTACGAGTGTGGCTCAGCAAGTGGATGGGGAAAATCCAAATCTGTATTATGGAAATGAGGATGTGATTCTGTGTGTTTTGCCGTTGTTTCATATTTATTCTTTGAATTCAGTTTTGCTGTGTGGATTAAGAGCTGGAAGTACCATTTTGATTATGCCCAAATTTGAGATCGGTTTGCTTTTGCAATTGGTGGAGAAATATGGAGTTACCGTGGCGCCCATCGTGCCGCCCATCGTTCTGGCTATTGCAAAGTCGCCGGAGCTAGAGAAGTATGACCTTTCGTCGATCAGAGTTATTAAATCCGGCGGTGCACCGCTTGGGAAGGAGCTTGAAGATACCGTAAGAGCCAAGTTTCCTAAGGCTGTGCTTGGACAGGGATACGGAATGACGGAGGCGGGTCCAGTACTAACAATGGGATTAGCATTTGCAAAGGAACCGTTTCCGATGAAACCAGGCGCCTGCGGCACCGTCGTCAGAAACGCCGAGATGAAGATCGTCGACACCGAAACCGGAAGTTCCTTGCCTCGTAACACGCCGGGAGAGATATGCATCAGAGGCGATCAAATCATGAAAGGCTATCTCAACAATCCGGAGGCAACGGCGGCCACAATCGACAAGGATGGGTGGTTGCACACCGGGGATATCGGATTCATCGACGAAGATGACGAGCTGTTCATTGTGGATCGGTTGAAGGAACTGATTAAGTACAAGGGATTTCAAGTGGCTCCGGCGGAACTGGAAGCTCTGTTGTTGACTCATCCGGTCATCTCTGATGCCGCCGTTGTTCCAATGAAAGATGAACAAGCTGGAGAAGTTCCGGTCGCGTTCGTTGTGAAATTGAAGAATTCTGAAGCCACTGAAGATGAAATTAAACAATTTATTTCAAAACAGGTGGTTTTCTACAAAAAGATAAACCGGGTGTTTTTCATAGACGCAATTCCCAAATCGCCCTCGGGAAAGATCTTGAGGAAGGAGTTGAGGGCAAAGTTGGCAGCTGCATTTCCAAATTCTAATTAA 1737 46.75 PFFELRRTINLQEKRKLSVLLLLLLLLQFGVEMGIETVENDVIFRSKLPDIYIPNHLPLHSYCLQENAAKIGHRTCLINGVTGESFTFNDVDLTARKVASGLNKLGITKRDVIMLLLPNSPEFVFAFLGASHLGAIMTAANPFFTAAEIAKQAKGSKAKLIITQSSYYEKLKEITEELPEVKIMTVDSPHDGCLWFGDLIKADEREIPRVEIDPDDVVALPYSSGTTGLPKGVMLTHKSLVTSVAQQVDGENPNLYYGNEDVILCVLPLFHIYSLNSVLLCGLRAGSTILIMPKFEIGLLLQLVEKYGVTVAPIVPPIVLAIAKSPELEKYDLSSIRVIKSGGAPLGKELEDTVRAKFPKAVLGQGYGMTEAGPVLTMGLAFAKEPFPMKPGACGTVVRNAEMKIVDTETGSSLPRNTPGEICIRGDQIMKGYLNNPEATAATIDKDGWLHTGDIGFIDEDDELFIVDRLKELIKYKGFQVAPAELEALLLTHPVISDAAVVPMKDEQAGEVPVAFVVKLKNSEATEDEIKQFISKQVVFYKKINRVFFIDAIPKSPSGKILRKELRAKLAAAFPNSN 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25168974 25172925 + MELO3C024886.2.1 Cme04g01757 326018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01757 578 Gene3D - 471 573 IPR045851 -
Cme04g01757 578 CDD 4CL 53 566 - -
Cme04g01757 578 Pfam AMP-binding enzyme C-terminal domain 485 560 IPR025110 -
Cme04g01757 578 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 38 572 - -
Cme04g01757 578 SUPERFAMILY Acetyl-CoA synthetase-like 49 572 - -
Cme04g01757 578 Pfam AMP-binding enzyme 64 476 IPR000873 -
Cme04g01757 578 ProSitePatterns Putative AMP-binding domain signature. 220 231 IPR020845 -
Cme04g01757 578 Gene3D - 37 470 IPR042099 -
Cme04g01757 578 PANTHER 4-COUMARATE--COA LIGASE 2-LIKE 38 572 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02526 Cme-Chr1:33235376 Cme04g01757 Cme-Chr4:25168974 0 dispersed
Cme01g02527 Cme-Chr1:33243310 Cme04g01757 Cme-Chr4:25168974 0 dispersed
Cme02g01554 Cme-Chr2:22576638 Cme04g01757 Cme-Chr4:25168974 0 dispersed
Cme04g01757 Cme-Chr4:25168974 Cme11g00620 Cme-Chr11:7131535 0 dispersed
Cme09g01003 Cme-Chr9:14110144 Cme04g01757 Cme-Chr4:25168974 5.61E-51 dispersed
Cme09g01106 Cme-Chr9:15666005 Cme04g01757 Cme-Chr4:25168974 1.51E-35 dispersed
Cme04g01757 Cme-Chr4:25168974 Cme05g01441 Cme-Chr5:23772562 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01757 K01904 - csv:101215427 1039.25