Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme04g01787 | ATGTACCATCATCAGCACAGAGGGAAGAGCATTCACTCATCAGAAAGGCATATGTTTTTACAAGGTGGTGGAAATGGGGGCGGAGGAGATTCAGGACTTGTTCTTTCAACTGATGCTAAGCCTAGACTTAAATGGACTCCTGATTTGCATGACCGCTTTGTTGAAGCTGTTAATCAATTGGGAGGGGCTGACAAGGCCACTCCTAAAACTGTGATGAAAATCATGGGCATTCCTGGGCTTACTTTGTACCACTTGAAAAGCCATCTTCAGAAATACAGGCTAAGCAAGAATTTGCATGGACAAGCAAATGGTGGAAGTGGAACAAATAAAACTGGTATGGGTTGGCGTGTAGGAACCGTGGCGGTTTCCGTAGACCAAAGGTTGGGAGAGGCAAATGGAGCAGCAGCAGCGGCAGCAGCAGCTCGTACTAACAGTATTGTTGTCGGCCCACAACCCTCCTCCCAGTCCAACAAAAACCTTCAAATAAGTGAAACAATACAGATGCAAATCGAAGTGCAGAAAAGGCTACACGAGCAACTCGAGGTACAAAGGCATTTACAACTTAGAATAGAAACACAAGGGAAGTATCTCCAAACAGTATTGGAGAAAGCACAAGAAACATTAGGAAGACAAAACTTAGGGACAGTAGGACTTGAAGCAGCCAAAGTACAGCTTTCAGAATTAGTCTCTAAAGTCTCCACTCAATGTCTAACCGCAGCATTTCCAGAGCTACACAATCAAAGCCAAAGCCAAAGGGTTTGTGCTCAACAACAAAGCCAACCCCCTGACTGCTCAATGGACAGTTGCCTGACCTCCAGCGAGGGGGGCTCCAAGGATCAACAAGCTGCCCAACAACAGCAACAACAACAACAAGTCCTCCTCCACAACAGCCACTTGGCCCTCCGACCCTACGCGGACCGAGCCTCGTCAGGTGCTCCCGACCACAGCCTTCATGGGCTGTCCATGAGCATTGGACTGGTGCAAGGGGAGAAAGCAGGGACGGAAGCGTATAATGGGTATTCGACATCGGAGGGTCAGAGATTATTTGGGAGTAAAAGGACGACAAAGGAGGCAGTACTGGAAAAGGAGACGGGGTTTAGATATAGAATGGATTTGAATAATGCCGGAGAGGATCAATTAATTAGTAGTAATAGTAATAATGATCATACGTCTTCTACTACTTGCAAGATGTTTGATCTGAATGGTTTTAGCTAA | 1215 | 46.34 | MYHHQHRGKSIHSSERHMFLQGGGNGGGGDSGLVLSTDAKPRLKWTPDLHDRFVEAVNQLGGADKATPKTVMKIMGIPGLTLYHLKSHLQKYRLSKNLHGQANGGSGTNKTGMGWRVGTVAVSVDQRLGEANGAAAAAAAARTNSIVVGPQPSSQSNKNLQISETIQMQIEVQKRLHEQLEVQRHLQLRIETQGKYLQTVLEKAQETLGRQNLGTVGLEAAKVQLSELVSKVSTQCLTAAFPELHNQSQSQRVCAQQQSQPPDCSMDSCLTSSEGGSKDQQAAQQQQQQQQVLLHNSHLALRPYADRASSGAPDHSLHGLSMSIGLVQGEKAGTEAYNGYSTSEGQRLFGSKRTTKEAVLEKETGFRYRMDLNNAGEDQLISSNSNNDHTSSTTCKMFDLNGFS | 404 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 25571642 | 25574703 | + | MELO3C026896.2.1 | Cme04g01787 | 326048 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme04g01787 | 404 | MobiDBLite | consensus disorder prediction | 264 | 288 | - | - | |
Cme04g01787 | 404 | Pfam | MYB-CC type transfactor, LHEQLE motif | 160 | 207 | IPR025756 | - | |
Cme04g01787 | 404 | SUPERFAMILY | Homeodomain-like | 39 | 95 | IPR009057 | - | |
Cme04g01787 | 404 | Pfam | Myb-like DNA-binding domain | 42 | 93 | IPR001005 | - | |
Cme04g01787 | 404 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cme04g01787 | 404 | Gene3D | - | 39 | 97 | - | - | |
Cme04g01787 | 404 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 37 | 97 | IPR017930 | - | |
Cme04g01787 | 404 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 40 | 95 | IPR006447 | GO:0003677 | |
Cme04g01787 | 404 | PANTHER | MYB-RELATED PROTEIN 2 | 4 | 404 | - | - | |
Cme04g01787 | 404 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 4 | 404 | IPR044848 | GO:0003700 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme04g01787 | Cme-Chr4:25571642 | Cme11g01645 | Cme-Chr11:24315395 | 1.20E-55 | dispersed | |
Cme05g00934 | Cme-Chr5:12800456 | Cme04g01787 | Cme-Chr4:25571642 | 1.44E-33 | dispersed | |
Cme06g00381 | Cme-Chr6:2389842 | Cme04g01787 | Cme-Chr4:25571642 | 9.96E-19 | dispersed | |
Cme04g01787 | Cme-Chr4:25571642 | Cme01g01493 | Cme-Chr1:19617312 | 2.01E-57 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41210 | PF00249 | Myb_DNA-binding | 6.00E-08 | CL0123 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme04g01787 | - | - | cmo:103502977 | 744.191 |