Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01787 ATGTACCATCATCAGCACAGAGGGAAGAGCATTCACTCATCAGAAAGGCATATGTTTTTACAAGGTGGTGGAAATGGGGGCGGAGGAGATTCAGGACTTGTTCTTTCAACTGATGCTAAGCCTAGACTTAAATGGACTCCTGATTTGCATGACCGCTTTGTTGAAGCTGTTAATCAATTGGGAGGGGCTGACAAGGCCACTCCTAAAACTGTGATGAAAATCATGGGCATTCCTGGGCTTACTTTGTACCACTTGAAAAGCCATCTTCAGAAATACAGGCTAAGCAAGAATTTGCATGGACAAGCAAATGGTGGAAGTGGAACAAATAAAACTGGTATGGGTTGGCGTGTAGGAACCGTGGCGGTTTCCGTAGACCAAAGGTTGGGAGAGGCAAATGGAGCAGCAGCAGCGGCAGCAGCAGCTCGTACTAACAGTATTGTTGTCGGCCCACAACCCTCCTCCCAGTCCAACAAAAACCTTCAAATAAGTGAAACAATACAGATGCAAATCGAAGTGCAGAAAAGGCTACACGAGCAACTCGAGGTACAAAGGCATTTACAACTTAGAATAGAAACACAAGGGAAGTATCTCCAAACAGTATTGGAGAAAGCACAAGAAACATTAGGAAGACAAAACTTAGGGACAGTAGGACTTGAAGCAGCCAAAGTACAGCTTTCAGAATTAGTCTCTAAAGTCTCCACTCAATGTCTAACCGCAGCATTTCCAGAGCTACACAATCAAAGCCAAAGCCAAAGGGTTTGTGCTCAACAACAAAGCCAACCCCCTGACTGCTCAATGGACAGTTGCCTGACCTCCAGCGAGGGGGGCTCCAAGGATCAACAAGCTGCCCAACAACAGCAACAACAACAACAAGTCCTCCTCCACAACAGCCACTTGGCCCTCCGACCCTACGCGGACCGAGCCTCGTCAGGTGCTCCCGACCACAGCCTTCATGGGCTGTCCATGAGCATTGGACTGGTGCAAGGGGAGAAAGCAGGGACGGAAGCGTATAATGGGTATTCGACATCGGAGGGTCAGAGATTATTTGGGAGTAAAAGGACGACAAAGGAGGCAGTACTGGAAAAGGAGACGGGGTTTAGATATAGAATGGATTTGAATAATGCCGGAGAGGATCAATTAATTAGTAGTAATAGTAATAATGATCATACGTCTTCTACTACTTGCAAGATGTTTGATCTGAATGGTTTTAGCTAA 1215 46.34 MYHHQHRGKSIHSSERHMFLQGGGNGGGGDSGLVLSTDAKPRLKWTPDLHDRFVEAVNQLGGADKATPKTVMKIMGIPGLTLYHLKSHLQKYRLSKNLHGQANGGSGTNKTGMGWRVGTVAVSVDQRLGEANGAAAAAAAARTNSIVVGPQPSSQSNKNLQISETIQMQIEVQKRLHEQLEVQRHLQLRIETQGKYLQTVLEKAQETLGRQNLGTVGLEAAKVQLSELVSKVSTQCLTAAFPELHNQSQSQRVCAQQQSQPPDCSMDSCLTSSEGGSKDQQAAQQQQQQQQVLLHNSHLALRPYADRASSGAPDHSLHGLSMSIGLVQGEKAGTEAYNGYSTSEGQRLFGSKRTTKEAVLEKETGFRYRMDLNNAGEDQLISSNSNNDHTSSTTCKMFDLNGFS 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25571642 25574703 + MELO3C026896.2.1 Cme04g01787 326048

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01787 404 MobiDBLite consensus disorder prediction 264 288 - -
Cme04g01787 404 Pfam MYB-CC type transfactor, LHEQLE motif 160 207 IPR025756 -
Cme04g01787 404 SUPERFAMILY Homeodomain-like 39 95 IPR009057 -
Cme04g01787 404 Pfam Myb-like DNA-binding domain 42 93 IPR001005 -
Cme04g01787 404 MobiDBLite consensus disorder prediction 1 25 - -
Cme04g01787 404 Gene3D - 39 97 - -
Cme04g01787 404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 37 97 IPR017930 -
Cme04g01787 404 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 40 95 IPR006447 GO:0003677
Cme04g01787 404 PANTHER MYB-RELATED PROTEIN 2 4 404 - -
Cme04g01787 404 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 404 IPR044848 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01787 - - - cmo:103502977 744.191
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01787 Cme-Chr4:25571642 Cme11g01645 Cme-Chr11:24315395 1.20E-55 dispersed
Cme05g00934 Cme-Chr5:12800456 Cme04g01787 Cme-Chr4:25571642 1.44E-33 dispersed
Cme06g00381 Cme-Chr6:2389842 Cme04g01787 Cme-Chr4:25571642 9.96E-19 dispersed
Cme04g01787 Cme-Chr4:25571642 Cme01g01493 Cme-Chr1:19617312 2.01E-57 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1362 . . . . . Bpe03g01302 . . Cmo06g01724 Cmo14g01154 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g01787 Blo07g01419 . . Bda05g01256 . . . . . . . . . . . . . Bhi11g01506 . . . . . . Cla10g01268 Cam10g1350 Cec10g1341 Cco10g1314 Clacu10g1325 Cmu10g2094 Cre10g1479 . Csa03g04029 Chy04g01368 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme11g01645 CCT 22 220 G2-like Transcription Factor Family AT3G24120 54.4 1.1e-43 174.1
Cme01g01493 CCT 16 176 G2-like Transcription Factor Family AT3G24120 59.8 5.9e-42 168.3
Cme04g01468 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 1.0e-38 157.5
Cme08g01009 . 31 186 G2-like Transcription Factor Family AT3G24120 56.4 3.0e-38 156.0
Cme06g01406 . 298 500 G2-like Transcription Factor Family AT5G16560 54.5 1.6e-45 180.6
Cme04g00145 . 298 503 G2-like Transcription Factor Family AT5G16560 50.9 6.4e-39 158.7
Cme04g00674 CCT 1 159 G2-like Transcription Factor Family AT5G42630 59.0 4.3e-37 151.8
Cme02g01289 CCT 4 340 G2-like Transcription Factor Family AT2G03500 51.4 6.1e-80 295.0
Cme03g00787 . 20 258 G2-like Transcription Factor Family AT1G25550 55.2 1.3e-51 200.3
Cme10g00288 . 19 255 G2-like Transcription Factor Family AT1G25550 53.4 2.6e-47 186.0
Cme08g01427 . 1 301 G2-like Transcription Factor Family AT5G05090 55.7 2.5e-76 282.3
Cme04g02132 . 1 286 G2-like Transcription Factor Family AT5G05090 55.9 4.9e-72 268.1
Cme11g01645 CCT 22 220 G2-like Transcription Factor Family AT3G24120 54.4 1.1e-43 174.1
Cme01g01493 CCT 16 176 G2-like Transcription Factor Family AT3G24120 59.8 5.9e-42 168.3
Cme04g01468 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 1.0e-38 157.5
Cme08g01009 . 31 186 G2-like Transcription Factor Family AT3G24120 56.4 3.0e-38 156.0
Cme01g01493 CCT 1 379 G2-like Transcription Factor Family AT1G79430 53.1 4.0e-85 312.0
Cme11g01645 CCT 1 223 G2-like Transcription Factor Family AT1G79430 72.3 4.9e-75 278.5
Cme04g01787 . 72 273 G2-like Transcription Factor Family AT5G18240 52.7 1.2e-40 164.1
Cme08g01008 . 54 270 G2-like Transcription Factor Family AT2G01060 65.2 1.2e-53 206.8
Cme08g01427 . 1 301 G2-like Transcription Factor Family AT3G10760 63.5 6.4e-93 337.8
Cme04g02132 . 1 286 G2-like Transcription Factor Family AT3G10760 59.2 4.6e-83 305.1
Cme08g01427 . 1 203 G2-like Transcription Factor Family AT2G40970 62.1 2.3e-63 239.2
Cme04g02132 . 1 199 G2-like Transcription Factor Family AT2G40970 63.3 1.1e-57 220.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003788 1 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 1 1 1 1 1 5 2 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41210 PF00249 Myb_DNA-binding 6.00E-08 CL0123 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g01787 Cme_Chr04 FPKM 2.89927 3.727652 5.99097 6.1057 79.822853 66.703186 87.978027 0.183685 0.179854 0.136939