Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01787 ATGTACCATCATCAGCACAGAGGGAAGAGCATTCACTCATCAGAAAGGCATATGTTTTTACAAGGTGGTGGAAATGGGGGCGGAGGAGATTCAGGACTTGTTCTTTCAACTGATGCTAAGCCTAGACTTAAATGGACTCCTGATTTGCATGACCGCTTTGTTGAAGCTGTTAATCAATTGGGAGGGGCTGACAAGGCCACTCCTAAAACTGTGATGAAAATCATGGGCATTCCTGGGCTTACTTTGTACCACTTGAAAAGCCATCTTCAGAAATACAGGCTAAGCAAGAATTTGCATGGACAAGCAAATGGTGGAAGTGGAACAAATAAAACTGGTATGGGTTGGCGTGTAGGAACCGTGGCGGTTTCCGTAGACCAAAGGTTGGGAGAGGCAAATGGAGCAGCAGCAGCGGCAGCAGCAGCTCGTACTAACAGTATTGTTGTCGGCCCACAACCCTCCTCCCAGTCCAACAAAAACCTTCAAATAAGTGAAACAATACAGATGCAAATCGAAGTGCAGAAAAGGCTACACGAGCAACTCGAGGTACAAAGGCATTTACAACTTAGAATAGAAACACAAGGGAAGTATCTCCAAACAGTATTGGAGAAAGCACAAGAAACATTAGGAAGACAAAACTTAGGGACAGTAGGACTTGAAGCAGCCAAAGTACAGCTTTCAGAATTAGTCTCTAAAGTCTCCACTCAATGTCTAACCGCAGCATTTCCAGAGCTACACAATCAAAGCCAAAGCCAAAGGGTTTGTGCTCAACAACAAAGCCAACCCCCTGACTGCTCAATGGACAGTTGCCTGACCTCCAGCGAGGGGGGCTCCAAGGATCAACAAGCTGCCCAACAACAGCAACAACAACAACAAGTCCTCCTCCACAACAGCCACTTGGCCCTCCGACCCTACGCGGACCGAGCCTCGTCAGGTGCTCCCGACCACAGCCTTCATGGGCTGTCCATGAGCATTGGACTGGTGCAAGGGGAGAAAGCAGGGACGGAAGCGTATAATGGGTATTCGACATCGGAGGGTCAGAGATTATTTGGGAGTAAAAGGACGACAAAGGAGGCAGTACTGGAAAAGGAGACGGGGTTTAGATATAGAATGGATTTGAATAATGCCGGAGAGGATCAATTAATTAGTAGTAATAGTAATAATGATCATACGTCTTCTACTACTTGCAAGATGTTTGATCTGAATGGTTTTAGCTAA 1215 46.34 MYHHQHRGKSIHSSERHMFLQGGGNGGGGDSGLVLSTDAKPRLKWTPDLHDRFVEAVNQLGGADKATPKTVMKIMGIPGLTLYHLKSHLQKYRLSKNLHGQANGGSGTNKTGMGWRVGTVAVSVDQRLGEANGAAAAAAAARTNSIVVGPQPSSQSNKNLQISETIQMQIEVQKRLHEQLEVQRHLQLRIETQGKYLQTVLEKAQETLGRQNLGTVGLEAAKVQLSELVSKVSTQCLTAAFPELHNQSQSQRVCAQQQSQPPDCSMDSCLTSSEGGSKDQQAAQQQQQQQQVLLHNSHLALRPYADRASSGAPDHSLHGLSMSIGLVQGEKAGTEAYNGYSTSEGQRLFGSKRTTKEAVLEKETGFRYRMDLNNAGEDQLISSNSNNDHTSSTTCKMFDLNGFS 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25571642 25574703 + MELO3C026896.2.1 Cme04g01787 326048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01787 404 MobiDBLite consensus disorder prediction 264 288 - -
Cme04g01787 404 Pfam MYB-CC type transfactor, LHEQLE motif 160 207 IPR025756 -
Cme04g01787 404 SUPERFAMILY Homeodomain-like 39 95 IPR009057 -
Cme04g01787 404 Pfam Myb-like DNA-binding domain 42 93 IPR001005 -
Cme04g01787 404 MobiDBLite consensus disorder prediction 1 25 - -
Cme04g01787 404 Gene3D - 39 97 - -
Cme04g01787 404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 37 97 IPR017930 -
Cme04g01787 404 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 40 95 IPR006447 GO:0003677
Cme04g01787 404 PANTHER MYB-RELATED PROTEIN 2 4 404 - -
Cme04g01787 404 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 404 IPR044848 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01787 Cme-Chr4:25571642 Cme11g01645 Cme-Chr11:24315395 1.20E-55 dispersed
Cme05g00934 Cme-Chr5:12800456 Cme04g01787 Cme-Chr4:25571642 1.44E-33 dispersed
Cme06g00381 Cme-Chr6:2389842 Cme04g01787 Cme-Chr4:25571642 9.96E-19 dispersed
Cme04g01787 Cme-Chr4:25571642 Cme01g01493 Cme-Chr1:19617312 2.01E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41210 PF00249 Myb_DNA-binding 6.00E-08 CL0123 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01787 - - cmo:103502977 744.191