Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01793 ATGGGCCTAAAAGGTAAACTTGGTGGAGACATTGGAGGCCTTACTGAACTGAGATCACTGGACCTTGCAGCCAACCGAGACCTTGTTGGTTCGATCTCTCCGGCTCTAGGGAACTTGTTGAAATTAGAGACCTTGATCCTTTCTACGTGCGGATTTAGTGGCAATATTCCAGAGGAATTGGGGAATCTTTCTGAGCTAACCTTCTTGTCTTTGTATTCTAACAATTTCACCGGTACCATACCGGCAACTCTGGGAAAACTCTCCAAACTATATTGGCTAGACCTGGCAGATAATCAGTTGACTGGTGCTCTCCCAGTTTCCACTTCCGGATCCTGGGGTTTAGATAAACTTCATATGGCTAAACATTTTCATTTCAGCAATAACCACTTATCAGGTACCATTCCACCTGAACTTTTTAGCTCTGAGATGGTATTAATACACATATTATTTGATGGAAACAATTTTTCTGGGAGTATCCCACCAACATTGGGACTTGTTCAGACCCTTGAGGTTCTTCGAGTTGATCGAAATTCTTTAACGGGAAATGTTCCATCAACTCTAAACAACCTAATAAATGTGAATGAATTGCATTTAGCCAACAATATGCTCACAGGTCCACTACCAAACTTAACTCAAATGAGTTCACTAAATTACGTGGATCTTAGTAACAACTCATTTAGCTCATCAGTTGCTCCAGAATGGTTCTCAACTCTACAATCTCTCACCACTCTTATTGTTGAATATGGATTAATACGGGGAAATCTGCCAGAAGGAATCTTTAGCTTACCACATATACAACAAGTGAAACTGAAGAATAATGCATTTAGTGGGACATTAAATATGGGCGACAGCATCAGCCAACGGTTGCAGCTAGTCGATTTGCAAAATAACAACATTTCCTCAGTTACCTCTTATTCGGGTTATACTAATGCTTTGATGCTGACAGGAAATCCTGTGTGTGATGCTGATATCCTCTCAAATACAAACTATTGCCAGCTTCAACAGCAACAAGCAAAGCCCTATATTACCAGCCTTGTCTACTGTGGACGTAATTCATGTCCTCCTGATGAGAAGCTGAACCCACGAAGTTGTGAATGTGCCTATCCATATGAAGGGACTTTATACTTTAGAGGACCCTCTTTCCGGGAATTGTCCAATATAACTCTGTTTCATTTATTGGAAATGAGCCTTTTGGAAAAATTCAATCGAACGCCTTTTATTCGAAACCCTTTCTTTAATGCTGATGATTATCTTCAGATGCAGCTTGCACTTTTTCCAGCCAATGGTAAATATTTCAACAGGGAAGACATTCAGAGGATTGGTTTTGATTTGCACAGTCAAAATTACAAACCCCCCGACAAATTTGGGCCATATTACTTCTTTGCGTCTCCTTATCCTTTTTCAGACATTGATAATGGATCAACTTCAACCAACACTGGATTGGTAATTGGAATAGCTGTTGGCTGCGCCTTTCTTGTTGTATGTCTCATTGGAATGGGAACATATGCAATTCAACAAAAGAGACGTGCAGAAAAGGCCAATCCAAATGCTTTCTGGTTGCCAAGTGGAAACGATAGTGGAAGCGCGCCGCAATTAAAGGGTGCCAGATGGTTTTCTTATGATGAACTTAAAAAATGCACAGATAATTTCTCCACCACTAATGTGGTAGGATCAGGAGGATTTGGCATGGTATACAGAGGAACACTGGTGGATGGAAAAGTAGTTGCAATCAAAAGAGCCCAACAAGGTTCAATGCAGGGTGGCCTTGAGTTCAAGACGGAAATTGAGCTGCTTTCACGAGTTCATCACAAGAATCTCGTAGGCCTAGTGGGATTTTGTGCCGAACAAGGAGAACAAATTCTTGTTTATGAATTCATGCCTAATGGGACACTTAGACAAAGCTTAGCTGGAAAATCTGGTATTTATCTTGACTGGAAGAGAAGGCTTCGTATCACACTGGGGTCAGCCAGAGGACTGACTTACTTACACGAGCTTGCTAATCCTCCCATAATTCATAGAGATGTTAAGTCCACCAACATTTTACTTGATGAATGTTTAAATGCAAAGGTTGCTGATTTTGGCTTGTCCAAGCTTGTCTCAGACAGTGTAAAGGGACATGTTTCTACTCAAGTCAAGGGCACAATGGGTTATTTGGATCCTGAATATTACATGAGTCAACAGTTGACGGAGAAAAGTGACGTGTACAGCTTCGGAGTAGTTATGTTGGAATTGCTAACTGCCAAGCTGCCAATTGAAAAAGGAAAGTACATAGTTCGTGAGGTGCGTATGTCGATGAACAAGAATGATGAAGAATATTATGGTTTGAAGCATATACTGGATCCAACCATATTTGATAATACGGCAAATCTTATTGGGTTCGGAAAGTTCTTAGAGTTGGCCATGCAATGTGTTGAAGAAGTAGCTGCAAATCGTCCCACAATGAGTGAAGTGGTTAAGGCAATTGAGAAGATTTTGCAGAATGATGGAATAAATACAAGTTCAACATCAGCATCCTCATCTGCCACAGACTTTGTGACTTCCAAAACTTCTTCTAGACATCCTTATAACGATGCTTCTCAGAAAGAGAGCGTCAACAATAATAGCCAATGA 2610 40.69 MGLKGKLGGDIGGLTELRSLDLAANRDLVGSISPALGNLLKLETLILSTCGFSGNIPEELGNLSELTFLSLYSNNFTGTIPATLGKLSKLYWLDLADNQLTGALPVSTSGSWGLDKLHMAKHFHFSNNHLSGTIPPELFSSEMVLIHILFDGNNFSGSIPPTLGLVQTLEVLRVDRNSLTGNVPSTLNNLINVNELHLANNMLTGPLPNLTQMSSLNYVDLSNNSFSSSVAPEWFSTLQSLTTLIVEYGLIRGNLPEGIFSLPHIQQVKLKNNAFSGTLNMGDSISQRLQLVDLQNNNISSVTSYSGYTNALMLTGNPVCDADILSNTNYCQLQQQQAKPYITSLVYCGRNSCPPDEKLNPRSCECAYPYEGTLYFRGPSFRELSNITLFHLLEMSLLEKFNRTPFIRNPFFNADDYLQMQLALFPANGKYFNREDIQRIGFDLHSQNYKPPDKFGPYYFFASPYPFSDIDNGSTSTNTGLVIGIAVGCAFLVVCLIGMGTYAIQQKRRAEKANPNAFWLPSGNDSGSAPQLKGARWFSYDELKKCTDNFSTTNVVGSGGFGMVYRGTLVDGKVVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLVGLVGFCAEQGEQILVYEFMPNGTLRQSLAGKSGIYLDWKRRLRITLGSARGLTYLHELANPPIIHRDVKSTNILLDECLNAKVADFGLSKLVSDSVKGHVSTQVKGTMGYLDPEYYMSQQLTEKSDVYSFGVVMLELLTAKLPIEKGKYIVREVRMSMNKNDEEYYGLKHILDPTIFDNTANLIGFGKFLELAMQCVEEVAANRPTMSEVVKAIEKILQNDGINTSSTSASSSATDFVTSKTSSRHPYNDASQKESVNNNSQ 869
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25620676 25626582 + MELO3C026902.2.1 Cme04g01793 326054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01793 869 Gene3D Ribonuclease Inhibitor 110 209 IPR032675 -
Cme04g01793 869 Gene3D Ribonuclease Inhibitor 1 109 IPR032675 -
Cme04g01793 869 SMART serkin_6 550 825 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g01793 869 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 854 - -
Cme04g01793 869 ProSitePatterns Serine/Threonine protein kinases active-site signature. 670 682 IPR008271 GO:0004672|GO:0006468
Cme04g01793 869 Gene3D Transferase(Phosphotransferase) domain 1 626 848 - -
Cme04g01793 869 PANTHER LRR RECEPTOR-LIKE KINASE 1 854 - -
Cme04g01793 869 ProSiteProfiles Protein kinase domain profile. 550 825 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g01793 869 MobiDBLite consensus disorder prediction 832 869 - -
Cme04g01793 869 ProSitePatterns Protein kinases ATP-binding region signature. 556 578 IPR017441 GO:0005524
Cme04g01793 869 Pfam Protein tyrosine and serine/threonine kinase 553 820 IPR001245 GO:0004672|GO:0006468
Cme04g01793 869 Gene3D Ribonuclease Inhibitor 210 348 IPR032675 -
Cme04g01793 869 Gene3D Phosphorylase Kinase; domain 1 523 625 - -
Cme04g01793 869 SUPERFAMILY Protein kinase-like (PK-like) 535 848 IPR011009 -
Cme04g01793 869 SUPERFAMILY L domain-like 5 300 - -
Cme04g01793 869 CDD STKc_IRAK 556 824 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01793 Cme-Chr4:25620676 Cme12g00002 Cme-Chr12:55338 5.01E-11 dispersed
Cme11g01355 Cme-Chr11:20386821 Cme04g01793 Cme-Chr4:25620676 3.45E-75 dispersed
Cme04g01793 Cme-Chr4:25620676 Cme04g02800 Cme-Chr4:33066024 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64822 PF07714 PK_Tyr_Ser-Thr 1.90E-44 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01793 - - csv:101207906 1639.4