Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme04g01796 | ATGAACGATCTTCTTTCGGATTCCTTTGAGATCCCTCGGGGTCAACCTTCTAGAGGAGGAGACATTGAGCTAGGAACAAATGCTCCAGGGGATCAGGGCATGGGGGATTTCTTCAAAAAGGTCCAAGAGATTGAAAAACAGAATGAGAAGCTGGATACGCTATTGAGAAAGCTCCAGGATTCACATGAGGAGTCCAAAGCTGTGACCAAAGCTCCAGCAATGAAAGCGATCAAGCAGCGGATGGAAAAAGATGTCGATGAGGTTGGAAAAGTTGCACGTTTTGTGAAGACTAAAGTTGAAGAACTCGACAGAGAGAATCTGGCAAATAGGCAGAGGCCCGGGTGTGGAAAAGGATCAGGTGTAGATAGATCAAGAACAGCCACTACTCTTGCCTTAAAAAAGAAGTTAAAAGACAAGATGACTGAATTCCAGATTTTACGGGAAAAAATCCATCAAGAGTACCGGGAGGTTGTTGAGAGACGGGTTTTCACAGTCACGGGTGCTAGGGCTGATGAAGAGACCATCGAGAAATTAATTGAAACTGGGGACAGTGAACAAATTTTTCAGAAGGCAATTCAAGAACAAGGGCGAGGACAGGTCATGGACACTTTAGCTGAAATTCACGAGCGTCACAGTGCAGTTAGAGAACTGGAAAGGAAGTTACTCGAGCTACAGCAGGTATTTCTCGATATGGCAGTATTGGTGGAGGCACAAGGGGATATGCTCGACAATATCGAATCACATGTTACAAGTGCAGTAGATCATGTGCAACAAGGGAATACTGCTCTTCAAAAGGCAAAGAAGCTACAAAAGAATTCTAGGAAATGGATGTGCATTGCCATCATAATCCTTCTAATCATTGTTGTGGTCATAGTAGTGGGAGTTCTTAAGCCATGGAATAATGGTAAGGGTGCCTAG | 918 | 44.12 | MNDLLSDSFEIPRGQPSRGGDIELGTNAPGDQGMGDFFKKVQEIEKQNEKLDTLLRKLQDSHEESKAVTKAPAMKAIKQRMEKDVDEVGKVARFVKTKVEELDRENLANRQRPGCGKGSGVDRSRTATTLALKKKLKDKMTEFQILREKIHQEYREVVERRVFTVTGARADEETIEKLIETGDSEQIFQKAIQEQGRGQVMDTLAEIHERHSAVRELERKLLELQQVFLDMAVLVEAQGDMLDNIESHVTSAVDHVQQGNTALQKAKKLQKNSRKWMCIAIIILLIIVVVIVVGVLKPWNNGKGA | 305 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 25668463 | 25682554 | + | MELO3C026621.2.1 | Cme04g01796 | 326057 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme04g01796 | 305 | Gene3D | - | 194 | 297 | - | - | |
Cme04g01796 | 305 | CDD | SynN | 34 | 191 | IPR006011 | GO:0016020 | |
Cme04g01796 | 305 | SMART | SynN_4 | 29 | 155 | IPR006011 | GO:0016020 | |
Cme04g01796 | 305 | ProSitePatterns | Syntaxin / epimorphin family signature. | 210 | 249 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Cme04g01796 | 305 | Coils | Coil | 41 | 64 | - | - | |
Cme04g01796 | 305 | Pfam | Syntaxin | 36 | 239 | IPR006011 | GO:0016020 | |
Cme04g01796 | 305 | CDD | SNARE_syntaxin1-like | 203 | 265 | - | - | |
Cme04g01796 | 305 | SUPERFAMILY | t-snare proteins | 33 | 259 | IPR010989 | GO:0016020|GO:0016192 | |
Cme04g01796 | 305 | Pfam | SNARE domain | 240 | 292 | IPR000727 | - | |
Cme04g01796 | 305 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 204 | 266 | IPR000727 | - | |
Cme04g01796 | 305 | SMART | tSNARE_6 | 199 | 266 | IPR000727 | - | |
Cme04g01796 | 305 | PANTHER | SYNTAXIN | 3 | 297 | IPR045242 | - | |
Cme04g01796 | 305 | Gene3D | - | 30 | 158 | - | - | |
Cme04g01796 | 305 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
Cme04g01796 | 305 | PANTHER | - | 3 | 297 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cme04g01796 | Cme08g02007 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme04g01796 | Cme-Chr4:25668463 | Cme11g00777 | Cme-Chr11:9709170 | 3.27E-100 | dispersed | |
Cme04g01796 | Cme-Chr4:25668463 | Cme08g01151 | Cme-Chr8:8134579 | 1.86E-95 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme04g01796 | K08486 | - | csv:101203075 | 520.005 |