Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01796 ATGAACGATCTTCTTTCGGATTCCTTTGAGATCCCTCGGGGTCAACCTTCTAGAGGAGGAGACATTGAGCTAGGAACAAATGCTCCAGGGGATCAGGGCATGGGGGATTTCTTCAAAAAGGTCCAAGAGATTGAAAAACAGAATGAGAAGCTGGATACGCTATTGAGAAAGCTCCAGGATTCACATGAGGAGTCCAAAGCTGTGACCAAAGCTCCAGCAATGAAAGCGATCAAGCAGCGGATGGAAAAAGATGTCGATGAGGTTGGAAAAGTTGCACGTTTTGTGAAGACTAAAGTTGAAGAACTCGACAGAGAGAATCTGGCAAATAGGCAGAGGCCCGGGTGTGGAAAAGGATCAGGTGTAGATAGATCAAGAACAGCCACTACTCTTGCCTTAAAAAAGAAGTTAAAAGACAAGATGACTGAATTCCAGATTTTACGGGAAAAAATCCATCAAGAGTACCGGGAGGTTGTTGAGAGACGGGTTTTCACAGTCACGGGTGCTAGGGCTGATGAAGAGACCATCGAGAAATTAATTGAAACTGGGGACAGTGAACAAATTTTTCAGAAGGCAATTCAAGAACAAGGGCGAGGACAGGTCATGGACACTTTAGCTGAAATTCACGAGCGTCACAGTGCAGTTAGAGAACTGGAAAGGAAGTTACTCGAGCTACAGCAGGTATTTCTCGATATGGCAGTATTGGTGGAGGCACAAGGGGATATGCTCGACAATATCGAATCACATGTTACAAGTGCAGTAGATCATGTGCAACAAGGGAATACTGCTCTTCAAAAGGCAAAGAAGCTACAAAAGAATTCTAGGAAATGGATGTGCATTGCCATCATAATCCTTCTAATCATTGTTGTGGTCATAGTAGTGGGAGTTCTTAAGCCATGGAATAATGGTAAGGGTGCCTAG 918 44.12 MNDLLSDSFEIPRGQPSRGGDIELGTNAPGDQGMGDFFKKVQEIEKQNEKLDTLLRKLQDSHEESKAVTKAPAMKAIKQRMEKDVDEVGKVARFVKTKVEELDRENLANRQRPGCGKGSGVDRSRTATTLALKKKLKDKMTEFQILREKIHQEYREVVERRVFTVTGARADEETIEKLIETGDSEQIFQKAIQEQGRGQVMDTLAEIHERHSAVRELERKLLELQQVFLDMAVLVEAQGDMLDNIESHVTSAVDHVQQGNTALQKAKKLQKNSRKWMCIAIIILLIIVVVIVVGVLKPWNNGKGA 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25668463 25682554 + MELO3C026621.2.1 Cme04g01796 326057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01796 305 Gene3D - 194 297 - -
Cme04g01796 305 CDD SynN 34 191 IPR006011 GO:0016020
Cme04g01796 305 SMART SynN_4 29 155 IPR006011 GO:0016020
Cme04g01796 305 ProSitePatterns Syntaxin / epimorphin family signature. 210 249 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cme04g01796 305 Coils Coil 41 64 - -
Cme04g01796 305 Pfam Syntaxin 36 239 IPR006011 GO:0016020
Cme04g01796 305 CDD SNARE_syntaxin1-like 203 265 - -
Cme04g01796 305 SUPERFAMILY t-snare proteins 33 259 IPR010989 GO:0016020|GO:0016192
Cme04g01796 305 Pfam SNARE domain 240 292 IPR000727 -
Cme04g01796 305 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Cme04g01796 305 SMART tSNARE_6 199 266 IPR000727 -
Cme04g01796 305 PANTHER SYNTAXIN 3 297 IPR045242 -
Cme04g01796 305 Gene3D - 30 158 - -
Cme04g01796 305 MobiDBLite consensus disorder prediction 1 34 - -
Cme04g01796 305 PANTHER - 3 297 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme04g01796 Cme08g02007 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01796 Cme-Chr4:25668463 Cme11g00777 Cme-Chr11:9709170 3.27E-100 dispersed
Cme04g01796 Cme-Chr4:25668463 Cme08g01151 Cme-Chr8:8134579 1.86E-95 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01796 K08486 - csv:101203075 520.005