Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01820 ATGATGCAACGCCATGATCATGATCAACCACAAAGCTCTGAGCTTTACAGATTGCTGGCACAGACCGGAGCCTTCAGCCTAGGCGGTGCGGCCTTTCCTCCGCCGCCGGCTACTACTACTCAAACCATGTCCAATAGCTCTTCCTCTTATTACCCTTTGGATAATAATAAGTCTCCCCCCGGGGTGGCGGCGCCGTCGCCTCACGACAGAGCTTTGGCGGCTTTGAAGAATCATAAGGAAGCTGAGAAGCGGAGGAGGGAGAGAATTAATTCTCATCTTGATAAGCTTCGTACTCTTCTTCCTTGTAATTCTAAGACGGATAAGGCATCTCTTCTTGCAAAAGTGGTTGAGCGAGTGAAAGAGCTTAAAAACGAGACGTTGGAGATCGCAGAGCTCGAAAGCTTCCCCTCGGAGACCGATGAGATCAGCGTGCTTTCCGGGGAGAAGTCAGAGGATGGAAGGCTTGTGTTCAAGGCATCATTGTGTTGTGAGGACCGCTCGGACCTCATCCCCGACCTTAATGATATCCTTAATTCTCTACACCTCAAAACCCTAAGGGCTGACATTGTCACGGTTGGTGGTCGAATCCGTAACGTCCTGCTTATCGCTGCTAACGACCACCATAGCATAGAGTCTGTTCATTTCCTTCAAAATGCGTTGAAATCTCTTATTGAACGCTCAAATTCTAGCCTTACATCCAAGAGGAGGCGCCTTGTACTTCACCACAAATGA 732 49.04 MMQRHDHDQPQSSELYRLLAQTGAFSLGGAAFPPPPATTTQTMSNSSSSYYPLDNNKSPPGVAAPSPHDRALAALKNHKEAEKRRRERINSHLDKLRTLLPCNSKTDKASLLAKVVERVKELKNETLEIAELESFPSETDEISVLSGEKSEDGRLVFKASLCCEDRSDLIPDLNDILNSLHLKTLRADIVTVGGRIRNVLLIAANDHHSIESVHFLQNALKSLIERSNSSLTSKRRRLVLHHK 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25939103 25941015 - MELO3C026599.2.1 Cme04g01820 326081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01820 243 MobiDBLite consensus disorder prediction 27 67 - -
Cme04g01820 243 CDD bHLH_AtAIG1_like 69 144 - -
Cme04g01820 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 122 IPR011598 GO:0046983
Cme04g01820 243 MobiDBLite consensus disorder prediction 35 55 - -
Cme04g01820 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 126 IPR036638 GO:0046983
Cme04g01820 243 SMART finulus 79 128 IPR011598 GO:0046983
Cme04g01820 243 Gene3D - 69 132 IPR036638 GO:0046983
Cme04g01820 243 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 12 241 - -
Cme04g01820 243 Pfam Helix-loop-helix DNA-binding domain 77 122 IPR011598 GO:0046983
Cme04g01820 243 PANTHER TRANSCRIPTION FACTOR BHLH30 12 241 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00264 Cme-Chr3:3398659 Cme04g01820 Cme-Chr4:25939103 2.47E-36 dispersed
Cme03g01798 Cme-Chr3:26416623 Cme04g01820 Cme-Chr4:25939103 1.85E-36 dispersed
Cme04g01820 Cme-Chr4:25939103 Cme05g00742 Cme-Chr5:9047899 8.07E-49 dispersed
Cme04g01820 Cme-Chr4:25939103 Cme05g01277 Cme-Chr5:20931824 2.35E-09 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41213 PF00010 HLH 3.80E-12 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01820 - - csv:101220675 424.861