Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme04g01820 | ATGATGCAACGCCATGATCATGATCAACCACAAAGCTCTGAGCTTTACAGATTGCTGGCACAGACCGGAGCCTTCAGCCTAGGCGGTGCGGCCTTTCCTCCGCCGCCGGCTACTACTACTCAAACCATGTCCAATAGCTCTTCCTCTTATTACCCTTTGGATAATAATAAGTCTCCCCCCGGGGTGGCGGCGCCGTCGCCTCACGACAGAGCTTTGGCGGCTTTGAAGAATCATAAGGAAGCTGAGAAGCGGAGGAGGGAGAGAATTAATTCTCATCTTGATAAGCTTCGTACTCTTCTTCCTTGTAATTCTAAGACGGATAAGGCATCTCTTCTTGCAAAAGTGGTTGAGCGAGTGAAAGAGCTTAAAAACGAGACGTTGGAGATCGCAGAGCTCGAAAGCTTCCCCTCGGAGACCGATGAGATCAGCGTGCTTTCCGGGGAGAAGTCAGAGGATGGAAGGCTTGTGTTCAAGGCATCATTGTGTTGTGAGGACCGCTCGGACCTCATCCCCGACCTTAATGATATCCTTAATTCTCTACACCTCAAAACCCTAAGGGCTGACATTGTCACGGTTGGTGGTCGAATCCGTAACGTCCTGCTTATCGCTGCTAACGACCACCATAGCATAGAGTCTGTTCATTTCCTTCAAAATGCGTTGAAATCTCTTATTGAACGCTCAAATTCTAGCCTTACATCCAAGAGGAGGCGCCTTGTACTTCACCACAAATGA | 732 | 49.04 | MMQRHDHDQPQSSELYRLLAQTGAFSLGGAAFPPPPATTTQTMSNSSSSYYPLDNNKSPPGVAAPSPHDRALAALKNHKEAEKRRRERINSHLDKLRTLLPCNSKTDKASLLAKVVERVKELKNETLEIAELESFPSETDEISVLSGEKSEDGRLVFKASLCCEDRSDLIPDLNDILNSLHLKTLRADIVTVGGRIRNVLLIAANDHHSIESVHFLQNALKSLIERSNSSLTSKRRRLVLHHK | 243 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 25939103 | 25941015 | - | MELO3C026599.2.1 | Cme04g01820 | 326081 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme04g01820 | 243 | MobiDBLite | consensus disorder prediction | 27 | 67 | - | - | |
Cme04g01820 | 243 | CDD | bHLH_AtAIG1_like | 69 | 144 | - | - | |
Cme04g01820 | 243 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 73 | 122 | IPR011598 | GO:0046983 | |
Cme04g01820 | 243 | MobiDBLite | consensus disorder prediction | 35 | 55 | - | - | |
Cme04g01820 | 243 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 71 | 126 | IPR036638 | GO:0046983 | |
Cme04g01820 | 243 | SMART | finulus | 79 | 128 | IPR011598 | GO:0046983 | |
Cme04g01820 | 243 | Gene3D | - | 69 | 132 | IPR036638 | GO:0046983 | |
Cme04g01820 | 243 | PANTHER | TRANSCRIPTION FACTOR BHLH106-RELATED | 12 | 241 | - | - | |
Cme04g01820 | 243 | Pfam | Helix-loop-helix DNA-binding domain | 77 | 122 | IPR011598 | GO:0046983 | |
Cme04g01820 | 243 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 12 | 241 | IPR045847 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme03g00264 | Cme-Chr3:3398659 | Cme04g01820 | Cme-Chr4:25939103 | 2.47E-36 | dispersed | |
Cme03g01798 | Cme-Chr3:26416623 | Cme04g01820 | Cme-Chr4:25939103 | 1.85E-36 | dispersed | |
Cme04g01820 | Cme-Chr4:25939103 | Cme05g00742 | Cme-Chr5:9047899 | 8.07E-49 | dispersed | |
Cme04g01820 | Cme-Chr4:25939103 | Cme05g01277 | Cme-Chr5:20931824 | 2.35E-09 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41213 | PF00010 | HLH | 3.80E-12 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme04g01820 | - | - | csv:101220675 | 424.861 |