Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01834 ATGGGTTCTGGTAATGGTTTTTATTCCACTAGTGAATTCAATTTGGATGCCAAATGGTTGATTGATCCTAAGCATCTTTTTGTTGGGCCAAAGATTGGGGAAGGTGCCCATGCCAAGGTGTACGAGGGAAAATACAAAAATCAGATTGTGGCTATCAAAATGGTGGGTAAAGGAGATACTCCCGAGAGGATGGCCAGAAGAGAAGCCCGGTTTGCAAGAGAGGTTGCAATGTTATCCAAAGTGCGACACAAGAACTTAGTGAAGGCAATGATCAATTCTACATTCAGAACTCTTGCTTCTGTATCTGAATTTCATGCTTTTCTGGAAATTGTTGTTGAGATACTTTTTATATTTATTGGCGCTTGCAAGGAACCTATGATGGTTATTGTGACTGAATTACTCACAGGTGGCACATTGCGCAAATTTCTCTTGAATTTGAGGCCAAGGAGCTTGGAACTTGATGTGGCAATTGGGTTTGCGCTTGATATTGCTCGTGCAATGGAGTGTTTACACTCCCATGGAATTATTCATCGTGACCTTAAACCAGACCATAAAACAATTAAGCTTGCTGATTTTGGTTTGGCAAGAGAAGAATCAGTAACAGAGATGATGACTGCAGAAACAGGAACATATAGATGGATGGCTCCAGAGCTCTATAGTACGGTCACTTTAAAACATGGAGATAAGAAGCATTATAATCACAAAGTTGATGCCTACAGCTTTGCCATTGTATTGTGGGAGCTCATCCTTAACAGGTTGCCTTTTGAAGGCATGTCGAATTTGCAGGCGGCGTATGCAGCTGCCTTTAAGAACATGAGGCCCAGTGCTGAAAACCTTCCAGAGGACTTAGCTTTAATAGTGACATCATGCTGGAGAGAAGATCCAAATACAAGACCAAACTTCAGCCAGATTATACAAATGCTATTGCAGTCCCTCTCTAGAATATCACCACGATCACCTGTGATCCCACCTCGGATATGTGCTTCTGAAAACGTTGTCATGCCACCTGAATCTCCCGGTACAAATTCCTTGATGGCTGTTAGACATGGCTCAGGGGAAGCCTCGCACAGCATGATCGAAGAAACCCCAACAAGCTCCTTCTTCTGCTTTAACAAATGTTACTGA 1125 42.58 MGSGNGFYSTSEFNLDAKWLIDPKHLFVGPKIGEGAHAKVYEGKYKNQIVAIKMVGKGDTPERMARREARFAREVAMLSKVRHKNLVKAMINSTFRTLASVSEFHAFLEIVVEILFIFIGACKEPMMVIVTELLTGGTLRKFLLNLRPRSLELDVAIGFALDIARAMECLHSHGIIHRDLKPDHKTIKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLKHGDKKHYNHKVDAYSFAIVLWELILNRLPFEGMSNLQAAYAAAFKNMRPSAENLPEDLALIVTSCWREDPNTRPNFSQIIQMLLQSLSRISPRSPVIPPRICASENVVMPPESPGTNSLMAVRHGSGEASHSMIEETPTSSFFCFNKCY 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26066055 26071420 - MELO3C026587.2.1 Cme04g01834 326095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01834 374 Pfam Protein kinase domain 30 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g01834 374 SUPERFAMILY Protein kinase-like (PK-like) 18 321 IPR011009 -
Cme04g01834 374 PANTHER PROTEIN KINASE ATN1 115 351 - -
Cme04g01834 374 PIRSF TyrPK_CSF1-R 138 364 - -
Cme04g01834 374 PIRSF TyrPK_CSF1-R 12 87 - -
Cme04g01834 374 Gene3D Transferase(Phosphotransferase) domain 1 135 319 - -
Cme04g01834 374 PANTHER PROTEIN KINASE ATN1 1 89 - -
Cme04g01834 374 ProSiteProfiles Protein kinase domain profile. 26 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g01834 374 PANTHER SERINE-THREONINE PROTEIN KINASE 115 351 - -
Cme04g01834 374 ProSitePatterns Protein kinases ATP-binding region signature. 32 57 IPR017441 GO:0005524
Cme04g01834 374 CDD STKc_MAP3K-like 32 308 - -
Cme04g01834 374 PANTHER SERINE-THREONINE PROTEIN KINASE 1 89 - -
Cme04g01834 374 Gene3D Phosphorylase Kinase; domain 1 14 105 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme04g01834 Cme09g00431 CCT
Cme04g01834 Cme09g00431 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01834 Cme-Chr4:26066055 Cme05g01215 Cme-Chr5:19656771 2.11E-68 dispersed
Cme02g02015 Cme-Chr2:26338340 Cme04g01834 Cme-Chr4:26066055 0 transposed
Cme04g02778 Cme-Chr4:32921716 Cme04g01834 Cme-Chr4:26066055 1.24E-137 transposed
Cme08g00827 Cme-Chr8:5484208 Cme04g01834 Cme-Chr4:26066055 5.95E-82 transposed
Cme04g01834 Cme-Chr4:26066055 Cme09g00431 Cme-Chr9:4118767 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64825 PF00069 Pkinase 4.70E-42 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01834 - - csv:101219563 648.277