Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01837 ATGGAACCACTTGTTGATGGTATGAGTTCTTTACTGAAAACTCAGAACCCGGCATCTACATCAAGGAATCTCGATTCATCTCGCCAGCCGTCTCCTAAACAATCTAGGAATGAAGCAACTTCATCAACGTCCTATGTTGTGTCTCAAAATTGTGCCAAGAAACCTCTTCGCCATCCAAATGGTTCTTCTGTAAGTAGTAAAAAACATCCTACCAATTTGAACGTGCAGAATGAAGGTTTAACTGATGTGACAAAACATACACATGTTTCCAATAAGGGGAAATCCGAGCTTGTAAACCTGACAGATAGTTCATATAAATCAACTGAAAGTTCTTTTCAGAGGAAGGTTCCTTCGGAGGGAGGTGGAGCGGAACCTCTTGTGAAGCATGTTATTGATGATTCTAAGGATTGTTGCTCAAGTGGCTCAGATGAATCTGGAAGTCAAGTATTGAACGCATCGAAAGGAGCTTCCACACAAATAATTGATCAACGAAAATCTCAACCAGCTGAAATATCTTGTCCAAGTCCTCAGAACAGCTTATATTCCACGACTTTATATGCAGAGGCCAAGCAAAGTTTCTCAAACACAGAAGTCAGTGAATGTGCAAGTAGCATTGAAAAGTCTAGCGAAAGCGTTGACATCACAAATTCTCTTGATCTTGACAAGAGTAGGAAAACAAGTGTTTACCGAGGGAGCACCGGCAGTGATATCAGTGATGAAAGCAACTCAAGTAGTTTAAGCAATGCCATGTATAAGCCTCATAAGGCAAATGATACAAGATGGGAAGCAATGCAAGTTGTGAGATCTCATGATGGGATGTTAGGACTTAACCATTTCCGATTGCTACGAAGACTGGGATGTGGCGATATCGGCAGTGTCTATCTTTCAGAGTTAACTGGTACCAAAACTTACTTTGCCATGAAGGTTATGGATAAGGCTGCTTTGGCAAGTAGGAAGAAGCTTCTGAGGGCTCAAACCGAACGTGAGATATTGCAATCTCTGGATCATCCTTTCCTGCCAACTTTGTATACACACTTTGAGACAGAAAAGTTCTCTTGTTTGGTAATGGAGTTTTGCCCTGGGGGCGACTTGCATGCTCTTAGGCAGAGACAGCCCGGCAAGTTTTTTCCAGAACATGCTGCAAGATTCTATGTGGCTGAAGTTCTCCTTGCTTTGGAGTATTTGCACATGCTTGGGATAATCTACAGGGACCTAAAACCTGAAAATGTGTTAGTGAGAGACGATGGGCACATAATGCTCTCTGATTTTGACCTGTCTCTTAGATGTGCAGTCTCCCCAACACTTGTTAAATCATCGAACTCGGGTTTAGAAGCTAAAAGCTCGGGGTACTGTGTTCAGCCTGCTTGCATTGAGCCAACTTGCATAATGCAGCCAGATTGTATCCAGCCAGCATGTTTTACACCTCGCTTCCTTAGCAGACACAAGAAAGAGAAGAAGTCAAAACCAAAGAGTGAAGTATATCATCAAGTGAGCCCTCTACCGGAGCTCATTGCCGAGCCCACAAGTGCAAGATCAATGTCATTCGTTGGTACACACGAGTACCTAGCACCTGAAATCATAAAAGGTGAAGGCCATGGAAGTGCCGTGGATTGGTGGACTTTCGGGATCTTTCTTTACGAACTTTTGTTTGGTAGAACTCCATTCAAGGGGGCTGGGAACCGTGCTACTTTGTTTAATGTGGTTGGTCAGCCATTGAGATTTCCTGAGTCTCCTTCTGTGAGCTTTGCAGCAAGAGACTTAATCCGAGGTTTGCTTGTAAAAGAACCACAGCATCGTCTCGCTTATAGGCGTGGCGCTACCGAGATCAAGCAACATCCGTTCTTCCAAAGCGTAAATTGGGCACTCATCCGCTGCGCCAATCCTCCTGAAGTGCCAAGAGTAGATGTCATTGATTTCTCTTCAAGAATGGAGACACCACACACACCGGCAGGCGAAAAGATGCCGGGAGTCGATGTGAAGCCTTCAGGTAATTATTTAGAGATCGACTTCTTTTGA 2016 43.9 MEPLVDGMSSLLKTQNPASTSRNLDSSRQPSPKQSRNEATSSTSYVVSQNCAKKPLRHPNGSSVSSKKHPTNLNVQNEGLTDVTKHTHVSNKGKSELVNLTDSSYKSTESSFQRKVPSEGGGAEPLVKHVIDDSKDCCSSGSDESGSQVLNASKGASTQIIDQRKSQPAEISCPSPQNSLYSTTLYAEAKQSFSNTEVSECASSIEKSSESVDITNSLDLDKSRKTSVYRGSTGSDISDESNSSSLSNAMYKPHKANDTRWEAMQVVRSHDGMLGLNHFRLLRRLGCGDIGSVYLSELTGTKTYFAMKVMDKAALASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHALRQRQPGKFFPEHAARFYVAEVLLALEYLHMLGIIYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKSSNSGLEAKSSGYCVQPACIEPTCIMQPDCIQPACFTPRFLSRHKKEKKSKPKSEVYHQVSPLPELIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGAGNRATLFNVVGQPLRFPESPSVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQSVNWALIRCANPPEVPRVDVIDFSSRMETPHTPAGEKMPGVDVKPSGNYLEIDFF 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26102624 26106562 - MELO3C026585.2.1 Cme04g01837 326098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01837 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 400 412 IPR008271 GO:0004672|GO:0006468
Cme04g01837 671 MobiDBLite consensus disorder prediction 1 97 - -
Cme04g01837 671 Gene3D Transferase(Phosphotransferase) domain 1 363 430 - -
Cme04g01837 671 MobiDBLite consensus disorder prediction 140 175 - -
Cme04g01837 671 MobiDBLite consensus disorder prediction 9 84 - -
Cme04g01837 671 SMART serkin_6 279 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g01837 671 PANTHER FLIPPASE KINASE 1-RELATED 14 671 - -
Cme04g01837 671 CDD STKc_phototropin_like 278 638 - -
Cme04g01837 671 SUPERFAMILY Protein kinase-like (PK-like) 254 642 IPR011009 -
Cme04g01837 671 ProSiteProfiles Protein kinase domain profile. 279 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g01837 671 Gene3D Transferase(Phosphotransferase) domain 1 510 633 - -
Cme04g01837 671 MobiDBLite consensus disorder prediction 227 250 - -
Cme04g01837 671 MobiDBLite consensus disorder prediction 134 175 - -
Cme04g01837 671 PANTHER SERINE/THREONINE-PROTEIN KINASE D6PKL3 14 671 - -
Cme04g01837 671 Pfam Protein kinase domain 280 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g01837 671 Pfam Protein kinase domain 512 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g01837 671 Gene3D Phosphorylase Kinase; domain 1 277 362 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01837 Cme-Chr4:26102624 Cme12g00788 Cme-Chr12:14316880 0 dispersed
Cme04g01837 Cme-Chr4:26102624 Cme08g01220 Cme-Chr8:8594012 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64826 PF00069 Pkinase 8.60E-36 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01837 K08286 - csv:101219962 1285.01