Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01845 AAGGCGGAGGCCAATAACAAAGCAATTCAGCAACCCGAATTTCTCGATTCGGCGCGCAGTGGGACATGCTCGAATCTTAGCGACCAAATTTATCGGAGAAAAAACGATTTTGGGGAATTTTTGAAGAGGTTTTTTCGATTGTGGTGTAGAAATTGTTCGAAAATGGCGGGTCTTGAGGAACTCAAGAAGAAACTTACTCCATTGTTTGATGCTGAAAAGGGGCTTTCGATGGACTCCCCTGTGGACCCGTCTGATTCTTATACGCTAATGGATGAATTAACGCAGTATCATAGTAAAAGGTCTTATGTTCAGACTCACATTGATAGTTTGCGTTACTTAAATGAATTTTCTGACAATGGGACCGTAAATTTGCTAAGCCGATCATATGGGGTTTATAATTTCAATGAGCTAGGGTTACAAAAATGCACATCATGGCTGGCCGATGATTCGGGGAGCAGTGAGAGGACATATCGATGTGCTTCCCGTGAAATGAGGATATTTGGAGCCATCGGTAGTGGTGCTAGCAGTGTTGTTCAGAGAGCTATCCACATTCCTGCTCATCGAATCATGGCACTAAAGAAGATTAATATCTTTGAAAAGGAGAAAAGACAGCAGCTTCTTACCGAAATACGGACACTATGCGAAGCACCCTGTTCTGAGGGTCTTGTGGAGTTTCATGGAGCATTTTATACCCCTGATTCTGGGCAAATAAGCATCGCTTTGGAATACATGGATGGAGGGTCATTGGCAGATGTCCTGCGTTTGAAAAAATGTATACCTGAGCCTGTCCTTTCTACTATGTTTCAGAAGCTTCTTCAAGGTTTAAGTTACCTGCATGGAGTAAGACATTTGGTTCACAGAGATATAAAGCCAGCTAATTTACTTGTAAATCTAAAGGGTGAAGCAAAGATTACGGATTTTGGCATAAGTGCTGGCTTAGAGAACTCAATGGCAATGTGTGCTACTTTCGTTGGAACTGTCACATACATGTCACCTGAGCGAATTCGAAACGAGAGCTATTCTTATCCAGCTGACATTTGGAGCCTTGGGCTTGCACTCTTTGAGTGTGGTACTGGTGAATTTCCATATTCAGCTACTGAAGGTCTAGTGAACCTTATGTTACAGATTTTGGATGACCCGTCTCCATTGCCGTCGAAACATAAGTTTTCGTCTGAGTTTTGCTCGTTTGTGGATGCCTGCTTGCAGAAAGATGCAGATGCTAGGCCAACAGCAGAGCAGCTGCTTTCACACCCATTTATCAAAAAATATGAGAATGAACAAGTAGACTTAGCAGCATTTGTCCAGAATGTGTTTGATCCAATACAGAGGATGAAGGACTTGGCAGATATGTTGACAATTCATTATTACTTGCTTTTTGATGGACCTGATGACTTCTGGCACCATACAAAAGCTTTATACCATGAAAGCTCAACTTTAAGTTTCTCAGGGAAGCAATTTTCTGGTCCAATTGATATCTTTGGAAAACTATCAGAGATTCGAAGTACATTAGCAGGAGATTGGCCTCTTGAAAAACTAGTTCACGTTGTCGAAAAACTCCAATGTCGAGCCCACGGTCGGGATGGAGTTGCCATAAGGGTGTCAGGATCCTTCATCCTTGGGAACCAGTTCCTCATATGTGGAGACGGTGTACAAGTAGAAGGACTGCCAAATTTTAAGGATCTCTCCATTGACATGGAAAGCAAGAAAATGGGATCCTTCCGGGAGCAGTTCATCATCGAGCCAAGCAATCTCATCGGTCGTTATTTCATTGCTAACCAAGAGCTTTATATAATCCAATAG 1800 42.39 KAEANNKAIQQPEFLDSARSGTCSNLSDQIYRRKNDFGEFLKRFFRLWCRNCSKMAGLEELKKKLTPLFDAEKGLSMDSPVDPSDSYTLMDELTQYHSKRSYVQTHIDSLRYLNEFSDNGTVNLLSRSYGVYNFNELGLQKCTSWLADDSGSSERTYRCASREMRIFGAIGSGASSVVQRAIHIPAHRIMALKKINIFEKEKRQQLLTEIRTLCEAPCSEGLVEFHGAFYTPDSGQISIALEYMDGGSLADVLRLKKCIPEPVLSTMFQKLLQGLSYLHGVRHLVHRDIKPANLLVNLKGEAKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALFECGTGEFPYSATEGLVNLMLQILDDPSPLPSKHKFSSEFCSFVDACLQKDADARPTAEQLLSHPFIKKYENEQVDLAAFVQNVFDPIQRMKDLADMLTIHYYLLFDGPDDFWHHTKALYHESSTLSFSGKQFSGPIDIFGKLSEIRSTLAGDWPLEKLVHVVEKLQCRAHGRDGVAIRVSGSFILGNQFLICGDGVQVEGLPNFKDLSIDMESKKMGSFREQFIIEPSNLIGRYFIANQELYIIQ 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26201523 26207000 - MELO3C026577.2.1 Cme04g01845 326106

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01845 599 Gene3D Transferase(Phosphotransferase) domain 1 241 443 - -
Cme04g01845 599 ProSitePatterns Serine/Threonine protein kinases active-site signature. 284 296 IPR008271 GO:0004672|GO:0006468
Cme04g01845 599 SUPERFAMILY NTF2-like 445 597 IPR032710 -
Cme04g01845 599 SMART serkin_6 164 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g01845 599 ProSitePatterns Protein kinases ATP-binding region signature. 170 193 IPR017441 GO:0005524
Cme04g01845 599 PANTHER - 56 598 - -
Cme04g01845 599 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 56 598 - -
Cme04g01845 599 Gene3D Phosphorylase Kinase; domain 1 140 240 - -
Cme04g01845 599 ProSiteProfiles Protein kinase domain profile. 164 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g01845 599 Pfam Protein kinase domain 168 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g01845 599 CDD PKc_MAPKK_plant_like 165 425 - -
Cme04g01845 599 SUPERFAMILY Protein kinase-like (PK-like) 166 450 IPR011009 -
Cme04g01845 599 Gene3D - 444 598 - -
Cme04g01845 599 ProSiteProfiles Nuclear transport factor 2 domain profile. 447 597 IPR018222 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01845 K20607 MKK3; mitogen-activated protein kinase kinase 3 [EC:2.7.12.2] - csv:101217978 1016.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00272 Cme-Chr2:2283734 Cme04g01845 Cme-Chr4:26201523 5.87E-72 dispersed
Cme04g01845 Cme-Chr4:26201523 Cme05g02012 Cme-Chr5:28599809 4.28E-78 dispersed
Cme04g01845 Cme-Chr4:26201523 Cme05g02055 Cme-Chr5:28855837 7.23E-74 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1310 . . . Bda13g01619 . Bpe14g00247 . . Cmo14g00685 . . Cma14g00668 . Car14g00608 . Cpe03g00581 . . . . . . . . Cla10g01325 Cam10g1289 Cec10g1402 Cco10g1377 Clacu10g1380 Cmu10g2151 Cre10g1535 . . . . . . Chy04g01430 Cme04g01845 Blo17g00301 . . . . . . . . . . . . . . . . Bhi11g01602 . . . Hepe02g1784 . . . . . . . . . . Csa03g03971 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme02g00272 CCT 28 338 MAP Kinase Kinase Gene Family AT4G26070 67.8 8.9e-127 450.3
Cme05g02055 CCT 7 303 MAP Kinase Kinase Gene Family AT4G26070 67.1 1.2e-115 413.3
Cme05g02012 . 28 353 MAP Kinase Kinase Gene Family AT4G26070 55.3 1.6e-107 386.3
Cme02g00272 CCT 1 311 MAP Kinase Kinase Gene Family AT4G29810 67.8 2.6e-126 448.7
Cme05g02012 . 12 326 MAP Kinase Kinase Gene Family AT4G29810 59.7 2.6e-110 395.6
Cme05g02055 CCT 9 277 MAP Kinase Kinase Gene Family AT4G29810 66.7 1.1e-105 380.2
Cme04g01845 . 115 599 MAP Kinase Kinase Gene Family AT5G40440 78.8 6.6e-227 783.5
Cme04g01310 . 1 366 MAP Kinase Kinase Gene Family AT1G51660 71.7 2.4e-130 462.2
Cme12g01812 . 5 313 MAP Kinase Kinase Gene Family AT1G51660 50.5 1.6e-84 310.1
Cme04g01310 . 1 366 MAP Kinase Kinase Gene Family AT3G21220 68.7 1.5e-129 459.5
Cme12g01812 . 41 311 MAP Kinase Kinase Gene Family AT3G21220 55.0 5.1e-85 311.6
Cme05g02012 . 3 356 MAP Kinase Kinase Gene Family AT5G56580 83.7 8.1e-171 596.7
Cme02g00272 CCT 7 337 MAP Kinase Kinase Gene Family AT5G56580 55.9 2.3e-109 392.5
Cme05g02055 CCT 14 292 MAP Kinase Kinase Gene Family AT5G56580 59.8 2.4e-98 355.9
Cme12g01812 . 1 313 MAP Kinase Kinase Gene Family AT1G18350 63.9 4.4e-109 391.3
Cme04g01310 . 77 334 MAP Kinase Kinase Gene Family AT1G18350 53.2 1.7e-76 283.1
Cme12g01812 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 52.3 1.3e-81 300.1
Cme12g01812 . 1 309 MAP Kinase Kinase Gene Family AT1G73500 66.8 4.6e-114 407.9
Cme04g01310 . 78 334 MAP Kinase Kinase Gene Family AT1G73500 52.7 3.5e-77 285.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009007 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64827 PF00069 Pkinase 2.20E-59 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g01845 Cme_Chr04 FPKM 15.705592 15.620495 10.159012 10.900023 7.564495 8.85318 6.660984 16.304749 16.191004 14.215534