Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme04g01850 | ATGTCTTCTTCCACCTACTCTAATTCTCCCTGTGCAGCCTGCAAGTTCCTACGTCGAAAATGCCTACCGGATTGTGTTTTTGCGCCATATTTTCCACCCGAAGAGCCTCAAAAGTTCGCCAATGTTCACAAGATCTTTGGTGCCAGTAACGTCAGCAAACTGTTGAACGAAGTCCAGCCGCATCAGCGGGAGGATGCCGTGAACTCGCTCGCCTACGAGGCCGAGGCAAGGATGAAAGACCCTGTCTATGGCTGTGTTGGCGCCATCTCTATACTCCAAAGGCAAGTCATCAAACTCCAAAAAGAGCTCGATGCTACTAACGCCGACCTCATTCGCTATGCCTGCAGTGAAATGCCAGCCCCATCTCCGTCTTCTTCGTCACAATATGCTCGAAGGTCGTCGTCAACAAGCCACGAGGGAAGCTCGTCTACCTCTAGCTATGGTCATTACTATACTGGTCTCTACTTTTCTCCATGGAGTAACAACAATAATGGCCCTTGTGGAGATGGCCATGACAAAGGAGAATACAAGTAA | 534 | 49.44 | MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEMPAPSPSSSSQYARRSSSTSHEGSSSTSSYGHYYTGLYFSPWSNNNNGPCGDGHDKGEYK | 177 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 26268072 | 26268729 | + | MELO3C009989.2.1 | Cme04g01850 | 326111 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme04g01850 | 177 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 25 | 1 | 164 | - | - | |
| Cme04g01850 | 177 | Coils | Coil | 89 | 109 | - | - | |
| Cme04g01850 | 177 | MobiDBLite | consensus disorder prediction | 118 | 177 | - | - | |
| Cme04g01850 | 177 | ProSiteProfiles | LOB domain profile. | 9 | 110 | IPR004883 | - | |
| Cme04g01850 | 177 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 1 | 164 | - | - | |
| Cme04g01850 | 177 | Pfam | Lateral organ boundaries (LOB) domain | 10 | 106 | IPR004883 | - | |
| Cme04g01850 | 177 | MobiDBLite | consensus disorder prediction | 119 | 167 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cme04g01850 | Cme09g00420 | CCT | |
| Cme04g01850 | Cme09g00420 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme02g02002 | Cme-Chr2:26262460 | Cme04g01850 | Cme-Chr4:26268072 | 1.14E-72 | dispersed | |
| Cme04g01850 | Cme-Chr4:26268072 | Cme05g01206 | Cme-Chr5:19496762 | 8.87E-61 | dispersed | |
| Cme03g00267 | Cme-Chr3:3441789 | Cme04g01850 | Cme-Chr4:26268072 | 1.61E-50 | transposed | |
| Cme10g01224 | Cme-Chr10:12573051 | Cme04g01850 | Cme-Chr4:26268072 | 8.83E-46 | transposed | |
| Cme12g01670 | Cme-Chr12:23697413 | Cme04g01850 | Cme-Chr4:26268072 | 9.63E-63 | wgd | |
| Cme04g01850 | Cme-Chr4:26268072 | Cme09g00420 | Cme-Chr9:3984698 | 2.75E-82 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 41214 | PF03195 | LOB | 2.40E-42 | No_clan | Cme | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme04g01850 | - | - | csv:101219482 | 333.569 |