Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01850 ATGTCTTCTTCCACCTACTCTAATTCTCCCTGTGCAGCCTGCAAGTTCCTACGTCGAAAATGCCTACCGGATTGTGTTTTTGCGCCATATTTTCCACCCGAAGAGCCTCAAAAGTTCGCCAATGTTCACAAGATCTTTGGTGCCAGTAACGTCAGCAAACTGTTGAACGAAGTCCAGCCGCATCAGCGGGAGGATGCCGTGAACTCGCTCGCCTACGAGGCCGAGGCAAGGATGAAAGACCCTGTCTATGGCTGTGTTGGCGCCATCTCTATACTCCAAAGGCAAGTCATCAAACTCCAAAAAGAGCTCGATGCTACTAACGCCGACCTCATTCGCTATGCCTGCAGTGAAATGCCAGCCCCATCTCCGTCTTCTTCGTCACAATATGCTCGAAGGTCGTCGTCAACAAGCCACGAGGGAAGCTCGTCTACCTCTAGCTATGGTCATTACTATACTGGTCTCTACTTTTCTCCATGGAGTAACAACAATAATGGCCCTTGTGGAGATGGCCATGACAAAGGAGAATACAAGTAA 534 49.44 MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEMPAPSPSSSSQYARRSSSTSHEGSSSTSSYGHYYTGLYFSPWSNNNNGPCGDGHDKGEYK 177
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 26268072 26268729 + MELO3C009989.2.1 Cme04g01850 326111
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01850 177 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 1 164 - -
Cme04g01850 177 Coils Coil 89 109 - -
Cme04g01850 177 MobiDBLite consensus disorder prediction 118 177 - -
Cme04g01850 177 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Cme04g01850 177 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 164 - -
Cme04g01850 177 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Cme04g01850 177 MobiDBLite consensus disorder prediction 119 167 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cme04g01850 Cme09g00420 CCT
Cme04g01850 Cme09g00420 ECH
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g02002 Cme-Chr2:26262460 Cme04g01850 Cme-Chr4:26268072 1.14E-72 dispersed
Cme04g01850 Cme-Chr4:26268072 Cme05g01206 Cme-Chr5:19496762 8.87E-61 dispersed
Cme03g00267 Cme-Chr3:3441789 Cme04g01850 Cme-Chr4:26268072 1.61E-50 transposed
Cme10g01224 Cme-Chr10:12573051 Cme04g01850 Cme-Chr4:26268072 8.83E-46 transposed
Cme12g01670 Cme-Chr12:23697413 Cme04g01850 Cme-Chr4:26268072 9.63E-63 wgd
Cme04g01850 Cme-Chr4:26268072 Cme09g00420 Cme-Chr9:3984698 2.75E-82 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41214 PF03195 LOB 2.40E-42 No_clan Cme TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01850 - - csv:101219482 333.569