Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01865 ATGGCTTCCATTTTCACCCATTCCTCGACCCAATTTCCAATCCATGGAGTTCCCTTCTTCTTCTTCTTCTTCCTCTTCTTCTCTGTTTCTCTCTCAGATCCCCGAATATCCCAATCCGGCAGTATCTGCGGAACCGTCAAGCCTCCACCTTCATCCAGATTCATCCCAACCTTCATCGAGGAAATGGAAGCTATATCCGAGCTTCTCACGACTCGCTCTTGGACAACTCACTTCGTCAATTCCACTCCCCCAATGTTCGCTCTATCTCAATGCTTCAACGATCTCTCTCACACCGATTGCCTTCTCTGCTACGCCGCCAGCCGTACATCCCTTCCCCGTTGCCTCCCCGCCATCTCCGCTCGGATCTTCCTCGACGGATGCTTCCTCCGGTATGACAATTACAGCTTCTATAAAGAATCCACTGATTCGCTTAGGGATTCGGTGAATTGCACCTCGGAATTGGGGGAAATCGATGAATCTGAGAGGTTAGGATTCGGGGAGAATGTTAGGGCTGTTGTTGAGACTGTGACGACGACGGCCATGGAGAAGGGTGGATTTGGGGTTGGGGAAGTTAATGGGATGTTTGGTTTGGCGCAGTGTTGGGGGAGTGTTGAACCTGAGGGATGCAGGGCTTGCTTGGAGAAGGCGAAGAGGAGTATTGGGAGGTGTTTGCCGAGTAAAGAAGGAAGGGCTATGAATGCTGGCTGTTACTTGAGATATTCAACTGTGAAATTCTATAATGATAAGGATGAAGAACGGGATCATGATGTTGTCGTATTTCAAAAAGAAACAGGGGATCTCACAGCTGCTTCTTCACTCTCAAACCCCTTAAATGGAAGTGGAGAAACTTCTGGATTTTCTGGAAGAAGAGCTGTAGTTACCATTGCCTTAGCTTCAGCTGCCTCCTTGATCGTCTTCTTTTCAGCTGTGTTTGCATGTTATACAAGAATATCAAAGTTCAAGAAAGAAAAGAAAAGGCAATCCCTCATTCCGGTTTCGTTTAAGGATTCCGATTTGAACTTCAAGTATGAAACACTTGAAAAGGCAACTAATTACTTCAACCCATCAAATAAGATAGGCCAAGGTGGAGCTGGTTCTGTATATAAAGGGACTCTTCCAAATGGGCAGATTGTTGCTGTGAAGAGATTGGTTTTCCATACAAGGCAATGGGTAGATGAGTTCTTCAATGAGGTGAATTTGATACGCGGAATCCAACACAAAAACCTTGTTGCTCTTTTGGGTTGCAGCATTGAAGGGCCTGAAAGTCTGCTCGTCTACGAGTATGTTCCGAACGGGAGCCTTGATCAGTTCATTTTCGATAAGAACAAGGCGCAGATTCTAACCTGGAAGCAGCGTTTCAATATTATAGTGGGAACAGCTGAGGGGCTTGCGCATCTTCATGAAGGTTGTAAAATAAGAATAATCCATAGAGACATAAAGAGTAGCAATGTTCTACTGGATGAAAATTTCAACCCAAAAATTGCGGATTTTGGCCTCGCTCGGCATTTTGCAGCCGATCAGTCTCATCTTAGCACAGGAATTGCCGGAACACTAGGTTATATAGCTCCTGAATATCTTGTTCGAGGACAACTTACAGAAAAAGCAGATGTTTATAGTTTTGGAGTGTTGATACTCGAGATCGTTTGTGGTAGAAGAAACAGTTCCTTCACTGAGAACTCCACCCCACTCCTCCAAACAGTTTGGGATCTGTACAAAACAGAGAGATTAACCGCAGCCATTGACACAAGCCTGAACAAGGATTACCCTGCAAAAGAAGCCATGGATGTTCTACAAATAGGACTTTTATGCACACAAGCTTTAGCTTCTTTGAGACCGTCAATGGCGACGATAGTGAAACTGTTAACAAGTGATGTAGAAAGGAAGGTTGGCATCCCAGAACAACCTCCATTTCTGAATCCTTGTGGACCTTCAAGAAGGTCTTGCAGAATTAGCAGCTTGGTATCGCATGCAGTTTCCAAACTTGAAGTTTCTTCTTGCACATCATCAGATTCAGCTTTCTCTTCTAACTTGCCTTCAAGAAGTGGAGATTTTGCTGAACTGAATTCAAATTGA 2073 44.62 MASIFTHSSTQFPIHGVPFFFFFFLFFSVSLSDPRISQSGSICGTVKPPPSSRFIPTFIEEMEAISELLTTRSWTTHFVNSTPPMFALSQCFNDLSHTDCLLCYAASRTSLPRCLPAISARIFLDGCFLRYDNYSFYKESTDSLRDSVNCTSELGEIDESERLGFGENVRAVVETVTTTAMEKGGFGVGEVNGMFGLAQCWGSVEPEGCRACLEKAKRSIGRCLPSKEGRAMNAGCYLRYSTVKFYNDKDEERDHDVVVFQKETGDLTAASSLSNPLNGSGETSGFSGRRAVVTIALASAASLIVFFSAVFACYTRISKFKKEKKRQSLIPVSFKDSDLNFKYETLEKATNYFNPSNKIGQGGAGSVYKGTLPNGQIVAVKRLVFHTRQWVDEFFNEVNLIRGIQHKNLVALLGCSIEGPESLLVYEYVPNGSLDQFIFDKNKAQILTWKQRFNIIVGTAEGLAHLHEGCKIRIIHRDIKSSNVLLDENFNPKIADFGLARHFAADQSHLSTGIAGTLGYIAPEYLVRGQLTEKADVYSFGVLILEIVCGRRNSSFTENSTPLLQTVWDLYKTERLTAAIDTSLNKDYPAKEAMDVLQIGLLCTQALASLRPSMATIVKLLTSDVERKVGIPEQPPFLNPCGPSRRSCRISSLVSHAVSKLEVSSCTSSDSAFSSNLPSRSGDFAELNSN 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26366240 26370086 - MELO3C009976.2.1 Cme04g01865 326126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01865 690 ProSiteProfiles Gnk2-homologous domain profile. 36 136 IPR002902 -
Cme04g01865 690 Gene3D Transferase(Phosphotransferase) domain 1 429 630 - -
Cme04g01865 690 CDD STKc_IRAK 359 622 - -
Cme04g01865 690 Pfam Protein kinase domain 355 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g01865 690 Gene3D Phosphorylase Kinase; domain 1 313 428 - -
Cme04g01865 690 SMART serkin_6 353 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g01865 690 ProSiteProfiles Gnk2-homologous domain profile. 145 245 IPR002902 -
Cme04g01865 690 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 42 281 675 - -
Cme04g01865 690 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 42 23 257 - -
Cme04g01865 690 Gene3D - 44 136 IPR038408 -
Cme04g01865 690 Gene3D - 151 245 IPR038408 -
Cme04g01865 690 Pfam Salt stress response/antifungal 77 134 IPR002902 -
Cme04g01865 690 Pfam Salt stress response/antifungal 162 242 IPR002902 -
Cme04g01865 690 ProSiteProfiles Protein kinase domain profile. 353 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g01865 690 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 23 257 - -
Cme04g01865 690 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 281 675 - -
Cme04g01865 690 MobiDBLite consensus disorder prediction 668 690 - -
Cme04g01865 690 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Cme04g01865 690 SUPERFAMILY Protein kinase-like (PK-like) 330 621 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02231 Cme-Chr3:29095583 Cme04g01865 Cme-Chr4:26366240 2.55E-06 dispersed
Cme04g01865 Cme-Chr4:26366240 Cme08g00372 Cme-Chr8:2303496 1.01E-83 dispersed
Cme08g01038 Cme-Chr8:6722425 Cme04g01865 Cme-Chr4:26366240 7.03E-15 dispersed
Cme06g01252 Cme-Chr6:10227291 Cme04g01865 Cme-Chr4:26366240 9.84E-80 transposed
Cme10g00543 Cme-Chr10:3464745 Cme04g01865 Cme-Chr4:26366240 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64828 PF00069 Pkinase 4.70E-46 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01865 - - csv:101218775 1218.37