Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01874 ATGGCATTAACAGCCCCAGGACAGCTCAATGTTAATGAATCCCCTTCATGGGGATCTAGAAGTGTCGACTGCTTTGAAAAACTGGAGCAGATTGGTGAAGGCACTTATGGTCAAGTTTATATGGCCAGAGAATTAAAAACAGGTGAAATTGTTGCACTGAAGAAAATACGAATGGATAATGAGAGGGAGGGGTTCCCTATTACTGCCATACGAGAAATCAAAATTCTAAAGAAGCTCCATCATGAAAATGTAATCAAGTTGAAAGAGATTGTGACATCTCCAGGTCCTGAGCAGGATGAACAAGGGAAGCCAGGCATGTTTTATGGTAACAAGTATAAAGGGGGCATCTACATGGTTTTCGAGTACATGGACCATGATTTGACAGGTCTTGCTGATCGTCCAGGAATGAGGTTTTCAGTTCCCCAAATCAAGTGCTACATGAGGCAGCTTCTCACAGGGCTTCACTATTGTCATGTAAATCAAGTGCTGCATAGGGATATAAAAGGATCAAATCTGTTAATTGACAACGATGGAAATCTGAAGCTTGCAGATTTTGGGCTTGCCAGATCGTTTTCTAATGATCACAATGCAAATCTAACAAATCGTGTCATTACCTTATGGTACAGACCGCCTGAATTGCTGCTTGGGTCAACAAAATATGGTCCAGCAGTAGACATGTGGTCTGTTGGTTGTATTTTTGCAGAGCTTCTTCATGGGAAGCCTATATTCCCTGGCAAGGATGAGCCGGAGCAATTAAATAAGATCTTTGAGCTATGTGGTGCTCCGGATGAGGTAAATTGGCCTGGGGTTTCGAAAATCCCTTGGTACAACAATTTCAAACCCACAAGGCCTATGAAGAGACGTCTCAGAGAAGTTTTCAGGCATTTTGATCGTCATGCTTTAGAACTTTTGGAAAAGATGCTCACTCTCGATCCTTCTCAGAGGATTGCTGCCAAGGATGCCCTTGATGCAGAGTATTTTTGGACTGACCCATTACCTTGTGACCCTAAGAGTTTACCCAAGTATGAAGCATCACACGAGTTCCAGACTAAGAAGAAGCGCCAACAGCAACGACAGCATGAAGAAACTGCAAAGCGACAGAAATTGCAACATGCACAGCATGGACGTCTTCCGCCTATTCAGCAGTCAGGGCAATCTCATGCACAGATGCGACCGGTAGCTAACCAGCCTATTCATGGGTCTCAACCTCCAATCTCTGCAGGGCCTAGCCATCATTTTGGGGGGAAGCCTCGTGGACCTCCGGGTCCTGGTAGGTATCCCTCAGGTGGAAATCCTCCTGGATACAACCACCCAAGTCGTGGTAGTCAAGGTGGGGGTGGTTATGGCAACTCACAATATGCTCAAGGACGAGGTGCACCTTATGGATCTGGTAACATGTCCGGTGCTGGTCCTCGAGGTGGAGCTGGAGGTGGTGGTTATGGTGTGGGAGCTTCAAGTTACCCACAGAATGGTCCATATGCTGGTAGTTCTGGTACTGGTCGTGGCTCCAATGCGATGGGTGGAAACCGAAACCAACAATATGGGTGGCAACAGTGA 1557 46.11 MALTAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEQDEQGKPGMFYGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNDGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDPSQRIAAKDALDAEYFWTDPLPCDPKSLPKYEASHEFQTKKKRQQQRQHEETAKRQKLQHAQHGRLPPIQQSGQSHAQMRPVANQPIHGSQPPISAGPSHHFGGKPRGPPGPGRYPSGGNPPGYNHPSRGSQGGGGYGNSQYAQGRGAPYGSGNMSGAGPRGGAGGGGYGVGASSYPQNGPYAGSSGTGRGSNAMGGNRNQQYGWQQ 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26453632 26461670 - MELO3C009967.2.1 Cme04g01874 326135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01874 518 PANTHER CYCLIN-DEPENDENT KINASE C-2 5 456 - -
Cme04g01874 518 PANTHER CELL DIVISION PROTEIN KINASE 5 456 - -
Cme04g01874 518 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Cme04g01874 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Cme04g01874 518 Gene3D Transferase(Phosphotransferase) domain 1 125 367 - -
Cme04g01874 518 MobiDBLite consensus disorder prediction 435 450 - -
Cme04g01874 518 MobiDBLite consensus disorder prediction 340 369 - -
Cme04g01874 518 Gene3D Phosphorylase Kinase; domain 1 14 124 - -
Cme04g01874 518 SUPERFAMILY Protein kinase-like (PK-like) 19 335 IPR011009 -
Cme04g01874 518 MobiDBLite consensus disorder prediction 376 403 - -
Cme04g01874 518 CDD STKc_CDK9_like 25 327 - -
Cme04g01874 518 SMART serkin_6 25 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g01874 518 Pfam Protein kinase domain 25 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g01874 518 ProSiteProfiles Protein kinase domain profile. 25 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g01874 518 MobiDBLite consensus disorder prediction 338 518 - -
Cme04g01874 518 MobiDBLite consensus disorder prediction 489 518 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01874 Cme-Chr4:26453632 Cme05g00041 Cme-Chr5:296340 0 dispersed
Cme10g00639 Cme-Chr10:4065775 Cme04g01874 Cme-Chr4:26453632 9.90E-95 dispersed
Cme04g01874 Cme-Chr4:26453632 Cme02g00153 Cme-Chr2:1140221 6.25E-116 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64830 PF00069 Pkinase 2.10E-74 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01874 K08819 - csv:101215918 967.992