Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01886 ATGGCGGTTCTGCAGCTTCCTTGTGTGGGGATTATTGATTATTCATCTTCCCCATTGTTGAGAGCAAGTAAATCGTCGTTGTTTTGGGGAAGAGATTTATGCTTTGGAAATGGGGGTATTAGGGATGGTCCGAGACCGAGAGCTTCATTCAATGGTCGAGTTCTTAAGATTTTCGCCATGTCCGATACTTCTTCTTCATCGTTTAAGATGAATCTCAATGAATACATGGTTACGCTTGAGAAGCCGCTCGGCATTCGGTTTGCGATTTCCGTCGATGGAAGAATCTTCGTTCATTCGCTTAAGAAAGGGGGTAATGCTGAGAAGTCAAGAATAATCATGGTGGGGGACACTTTAAAGAAGGCAAGCGATTCATCAGGCGTCAATCTCATTGAGATTAAAGACTTTGTATTTGGTTTCTTCAGGATGATGCTGAAGGAGAAAACGGGATCTTTTAGCCTGGTTCTTGAAAGACCTTTTTCTCCTTTTCCTATTCAACAGCTTCTACTTTCAAACGATTTAGAAATTTTGTTTAATAGAGGTCGAGTGCCTATTGCTACTTGGAAGAAAGAAATTTTGGCATCAAATTTACAAACATCTGATGAAAGCAGTGGGAACTCTGGCTTTGCGGCTTTCTCCTCTAAGTTCTTAACATCAGAAGGTTGGAAACTTCTTAGAGATCAAAATGAAGATACAAAATCACATATACAGAGAAACATTCTCGCACCTCAAATCGGCCAACTTGTTGGTATATTTACTGAAGATGAGCCTGGAGATGGAGAATGGGCTCATGGGAGCTTCCCCCTAGATGAATATGTCAAGGCGTTAGAACGGTCTAAAGGGGAGCTATATTATGATCACTCTCGTGGTATGAGCTATAGTAAGATCACGGAGCAAATCTATGTGGGGTCATGTATACAGACGGAAGCAGATGTTGAGGCTTTGTCAAATAACGTGGGAGTCACCGCTGTACTGAATTTTCAAAGTGCAACTGAGGCAGAAAACTGGGGGATTAATGCCAAGTTAATCAACGAGTCATGCCAAAAATTTGATATTCTAATGATCAGCTATCCTATCAGGGAAGGAGATTCTTATGATTTGAGGAAAAAACTACCATTCTGTGTGGGTCTACTTCTACGACTGTTAAAAAAGAACCATCGAGTTTTTATAACTTGTACCTCTGGTTTTGATCGATCTCCAGCCAGTGTGATTGCATATCTACACTGGATGACCGATACTTCTCTTCATGCAGCCTATAATTTTATCACCAGTTTGCATTCCTGCAAACCTGACAGGCCTGCTATCGCTTGGGCTACCTGGGATCTCATAGCAATGGTGGAAAATGGAAGGCATGATGGACCTCCCACTCATGCCGTCACTTTCGTATGGAATGGACAAGAGGGGGAGGATGTAAATTTGGTTGGAGATTTTACTGGTAACTGGAAAGAACCGGTCAAGGCTAGTCACAAGGGTGGACCTAGATATGAAGCAGAAATGAAACTTCCTCAGGGGAAGTATTACTATAAGTACATCACAAATGGTCAGTGGAGGCACTCAACATCTTCACCTGCTGAAAGAGACGAAAGGGGGAATGTCAACAATGTAATAGTCATCGGTGACACTGCCAGTGTTAGGCCTTCAGTTCAGCCGCAAAAGAAAGATGCAAATATTGTGAAGGTAATTGAAAGACCATTGACAGAAAACGAGCGGTTTATGTTGGCGAAAGCGGCTAGGTGTGTTGCATTTTCAGTATGTCCAATTAGACTAACTCCTAAGTAG 1776 42.17 MAVLQLPCVGIIDYSSSPLLRASKSSLFWGRDLCFGNGGIRDGPRPRASFNGRVLKIFAMSDTSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIFVHSLKKGGNAEKSRIIMVGDTLKKASDSSGVNLIEIKDFVFGFFRMMLKEKTGSFSLVLERPFSPFPIQQLLLSNDLEILFNRGRVPIATWKKEILASNLQTSDESSGNSGFAAFSSKFLTSEGWKLLRDQNEDTKSHIQRNILAPQIGQLVGIFTEDEPGDGEWAHGSFPLDEYVKALERSKGELYYDHSRGMSYSKITEQIYVGSCIQTEADVEALSNNVGVTAVLNFQSATEAENWGINAKLINESCQKFDILMISYPIREGDSYDLRKKLPFCVGLLLRLLKKNHRVFITCTSGFDRSPASVIAYLHWMTDTSLHAAYNFITSLHSCKPDRPAIAWATWDLIAMVENGRHDGPPTHAVTFVWNGQEGEDVNLVGDFTGNWKEPVKASHKGGPRYEAEMKLPQGKYYYKYITNGQWRHSTSSPAERDERGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26538163 26543517 + MELO3C009960.2.1 Cme04g01886 326147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01886 591 ProSiteProfiles PDZ domain profile. 76 159 IPR001478 GO:0005515
Cme04g01886 591 CDD E_set_AMPKbeta_like_N 458 537 - -
Cme04g01886 591 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 28 590 IPR030066 GO:0005983
Cme04g01886 591 SUPERFAMILY E set domains 455 538 IPR014756 -
Cme04g01886 591 Pfam Glycogen recognition site of AMP-activated protein kinase 458 539 IPR032640 -
Cme04g01886 591 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 28 590 - -
Cme04g01886 591 Gene3D Protein tyrosine phosphatase superfamily 284 550 IPR029021 -
Cme04g01886 591 CDD DSP_laforin-like 290 436 IPR045204 GO:0019203|GO:0046838
Cme04g01886 591 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 283 429 IPR029021 -
Cme04g01886 591 Pfam Dual specificity phosphatase, catalytic domain 300 423 IPR000340 GO:0008138|GO:0016311
Cme04g01886 591 ProSiteProfiles Dual specificity protein phosphatase domain profile. 291 450 IPR020422 GO:0006470|GO:0008138
Cme04g01886 591 Gene3D Immunoglobulins 445 541 IPR013783 -
Cme04g01886 591 SUPERFAMILY PDZ domain-like 59 163 IPR036034 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01886 - - - csv:101214241 1151.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01886 Cme-Chr4:26538163 Cme10g00122 Cme-Chr10:855992 1.00E-29 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1353 . . Bda01g01276 . . . . . . Cmo11g01690 Cma11g01431 . Car11g01375 . . . . . . . . . . . Cla10g01351 Cam10g1259 Cec10g1431 Cco10g1406 Clacu10g1409 Cmu10g2179 Cre10g1562 Cone11ag0116 Cone18ag1361 . . . . Chy04g01457 Cme04g01886 . Blo18g00335 . . . . Bma01g00978 . . . . . . . . . . Bhi11g01648 . . . Hepe02g1823 . . . . . . . . . . Csa03g03940 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme01g00074 . 42 612 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 1.2e-182 636.7
Cme08g00594 . 33 563 Protein tyrosine phosphatase (PTP) family AT3G50110 55.9 7.6e-164 574.3
Cme04g02013 . 1 414 Protein tyrosine phosphatase (PTP) family AT5G39400 65.1 1.3e-156 549.7
Cme03g01177 . 1 859 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1171.0
Cme03g01177 . 1 859 Protein tyrosine phosphatase (PTP) family AT5G04540 65.3 0.0e+00 1106.3
Cme02g01069 . 2 1194 Protein tyrosine phosphatase (PTP) family AT5G58160 55.2 1.5e-288 989.6
Cme07g00118 . 1 516 Protein tyrosine phosphatase (PTP) family AT5G58160 54.3 2.7e-160 563.5
Cme01g00724 . 76 385 Protein tyrosine phosphatase (PTP) family AT1G71860 66.7 1.6e-120 429.5
Cme01g00723 . 76 318 Protein tyrosine phosphatase (PTP) family AT1G71860 62.0 5.8e-86 314.7
Cme11g01934 . 32 170 Protein tyrosine phosphatase (PTP) family AT3G06110 57.1 1.2e-39 159.8
Cme05g00319 . 1 124 Protein tyrosine phosphatase (PTP) family AT2G04550 56.8 3.7e-39 158.3
Cme10g00122 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 69.4 7.2e-114 407.1
Cme10g01211 . 39 282 Protein tyrosine phosphatase (PTP) family AT3G10940 74.7 1.8e-109 392.5
Cme04g01886 . 143 591 Protein tyrosine phosphatase (PTP) family AT3G01510 72.4 5.3e-204 707.2
Cme11g01505 . 2 192 Protein tyrosine phosphatase (PTP) family AT2G32960 54.2 3.4e-62 235.3
Cme02g00915 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 51.5 3.4e-54 208.8
Cme05g02021 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.8e-79 293.1
Cme11g01505 . 51 192 Protein tyrosine phosphatase (PTP) family AT4G03960 77.5 1.3e-64 243.0
Cme02g00915 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.0 2.0e-57 219.2
Cme02g00915 . 3 200 Protein tyrosine phosphatase (PTP) family AT3G02800 68.0 3.2e-79 291.6
Cme11g01505 . 44 190 Protein tyrosine phosphatase (PTP) family AT3G02800 62.8 2.1e-51 199.1
Cme10g00858 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.1 6.1e-62 236.1
Cme04g02013 . 1 414 Protein tyrosine phosphatase (PTP) family AT5G39400 65.1 1.3e-156 549.7
Cme01g00074 . 11 612 Protein tyrosine phosphatase (PTP) family AT3G19420 64.4 2.9e-221 765.0
Cme08g00594 . 31 563 Protein tyrosine phosphatase (PTP) family AT3G19420 56.2 1.3e-165 580.1
Cme01g00074 . 42 612 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 1.2e-182 636.7
Cme08g00594 . 33 563 Protein tyrosine phosphatase (PTP) family AT3G50110 55.9 7.6e-164 574.3
Cme02g01069 . 2 1194 Protein tyrosine phosphatase (PTP) family AT5G58160 55.2 1.5e-288 989.6
Cme07g00118 . 1 516 Protein tyrosine phosphatase (PTP) family AT5G58160 54.3 2.7e-160 563.5
Cme03g01177 . 1 859 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1171.0
Cme03g01177 . 1 859 Protein tyrosine phosphatase (PTP) family AT5G04540 65.3 0.0e+00 1106.3
Cme11g01896 . 17 216 Protein tyrosine phosphatase (PTP) family AT3G44620 51.5 1.2e-54 210.3
Cme06g02484 . 27 320 Protein tyrosine phosphatase (PTP) family AT2G35320 64.3 3.3e-112 401.7
Cme08g02497 . 1 674 Protein tyrosine phosphatase (PTP) family AT3G09100 68.6 2.3e-275 944.9
Cme08g02497 . 5 674 Protein tyrosine phosphatase (PTP) family AT5G01290 65.4 2.9e-251 864.8
Cme08g02497 . 86 674 Protein tyrosine phosphatase (PTP) family AT5G28210 56.4 1.2e-182 636.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008517 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g01886 Cme_Chr04 FPKM 3.054063 3.312941 2.316303 2.387402 6.306293 6.395818 6.492577 2.082777 2.023163 2.305718