Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme04g01886 | ATGGCGGTTCTGCAGCTTCCTTGTGTGGGGATTATTGATTATTCATCTTCCCCATTGTTGAGAGCAAGTAAATCGTCGTTGTTTTGGGGAAGAGATTTATGCTTTGGAAATGGGGGTATTAGGGATGGTCCGAGACCGAGAGCTTCATTCAATGGTCGAGTTCTTAAGATTTTCGCCATGTCCGATACTTCTTCTTCATCGTTTAAGATGAATCTCAATGAATACATGGTTACGCTTGAGAAGCCGCTCGGCATTCGGTTTGCGATTTCCGTCGATGGAAGAATCTTCGTTCATTCGCTTAAGAAAGGGGGTAATGCTGAGAAGTCAAGAATAATCATGGTGGGGGACACTTTAAAGAAGGCAAGCGATTCATCAGGCGTCAATCTCATTGAGATTAAAGACTTTGTATTTGGTTTCTTCAGGATGATGCTGAAGGAGAAAACGGGATCTTTTAGCCTGGTTCTTGAAAGACCTTTTTCTCCTTTTCCTATTCAACAGCTTCTACTTTCAAACGATTTAGAAATTTTGTTTAATAGAGGTCGAGTGCCTATTGCTACTTGGAAGAAAGAAATTTTGGCATCAAATTTACAAACATCTGATGAAAGCAGTGGGAACTCTGGCTTTGCGGCTTTCTCCTCTAAGTTCTTAACATCAGAAGGTTGGAAACTTCTTAGAGATCAAAATGAAGATACAAAATCACATATACAGAGAAACATTCTCGCACCTCAAATCGGCCAACTTGTTGGTATATTTACTGAAGATGAGCCTGGAGATGGAGAATGGGCTCATGGGAGCTTCCCCCTAGATGAATATGTCAAGGCGTTAGAACGGTCTAAAGGGGAGCTATATTATGATCACTCTCGTGGTATGAGCTATAGTAAGATCACGGAGCAAATCTATGTGGGGTCATGTATACAGACGGAAGCAGATGTTGAGGCTTTGTCAAATAACGTGGGAGTCACCGCTGTACTGAATTTTCAAAGTGCAACTGAGGCAGAAAACTGGGGGATTAATGCCAAGTTAATCAACGAGTCATGCCAAAAATTTGATATTCTAATGATCAGCTATCCTATCAGGGAAGGAGATTCTTATGATTTGAGGAAAAAACTACCATTCTGTGTGGGTCTACTTCTACGACTGTTAAAAAAGAACCATCGAGTTTTTATAACTTGTACCTCTGGTTTTGATCGATCTCCAGCCAGTGTGATTGCATATCTACACTGGATGACCGATACTTCTCTTCATGCAGCCTATAATTTTATCACCAGTTTGCATTCCTGCAAACCTGACAGGCCTGCTATCGCTTGGGCTACCTGGGATCTCATAGCAATGGTGGAAAATGGAAGGCATGATGGACCTCCCACTCATGCCGTCACTTTCGTATGGAATGGACAAGAGGGGGAGGATGTAAATTTGGTTGGAGATTTTACTGGTAACTGGAAAGAACCGGTCAAGGCTAGTCACAAGGGTGGACCTAGATATGAAGCAGAAATGAAACTTCCTCAGGGGAAGTATTACTATAAGTACATCACAAATGGTCAGTGGAGGCACTCAACATCTTCACCTGCTGAAAGAGACGAAAGGGGGAATGTCAACAATGTAATAGTCATCGGTGACACTGCCAGTGTTAGGCCTTCAGTTCAGCCGCAAAAGAAAGATGCAAATATTGTGAAGGTAATTGAAAGACCATTGACAGAAAACGAGCGGTTTATGTTGGCGAAAGCGGCTAGGTGTGTTGCATTTTCAGTATGTCCAATTAGACTAACTCCTAAGTAG | 1776 | 42.17 | MAVLQLPCVGIIDYSSSPLLRASKSSLFWGRDLCFGNGGIRDGPRPRASFNGRVLKIFAMSDTSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIFVHSLKKGGNAEKSRIIMVGDTLKKASDSSGVNLIEIKDFVFGFFRMMLKEKTGSFSLVLERPFSPFPIQQLLLSNDLEILFNRGRVPIATWKKEILASNLQTSDESSGNSGFAAFSSKFLTSEGWKLLRDQNEDTKSHIQRNILAPQIGQLVGIFTEDEPGDGEWAHGSFPLDEYVKALERSKGELYYDHSRGMSYSKITEQIYVGSCIQTEADVEALSNNVGVTAVLNFQSATEAENWGINAKLINESCQKFDILMISYPIREGDSYDLRKKLPFCVGLLLRLLKKNHRVFITCTSGFDRSPASVIAYLHWMTDTSLHAAYNFITSLHSCKPDRPAIAWATWDLIAMVENGRHDGPPTHAVTFVWNGQEGEDVNLVGDFTGNWKEPVKASHKGGPRYEAEMKLPQGKYYYKYITNGQWRHSTSSPAERDERGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK | 591 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 26538163 | 26543517 | + | MELO3C009960.2.1 | Cme04g01886 | 326147 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme04g01886 | 591 | ProSiteProfiles | PDZ domain profile. | 76 | 159 | IPR001478 | GO:0005515 | |
Cme04g01886 | 591 | CDD | E_set_AMPKbeta_like_N | 458 | 537 | - | - | |
Cme04g01886 | 591 | PANTHER | PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC | 28 | 590 | IPR030066 | GO:0005983 | |
Cme04g01886 | 591 | SUPERFAMILY | E set domains | 455 | 538 | IPR014756 | - | |
Cme04g01886 | 591 | Pfam | Glycogen recognition site of AMP-activated protein kinase | 458 | 539 | IPR032640 | - | |
Cme04g01886 | 591 | PANTHER | PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC | 28 | 590 | - | - | |
Cme04g01886 | 591 | Gene3D | Protein tyrosine phosphatase superfamily | 284 | 550 | IPR029021 | - | |
Cme04g01886 | 591 | CDD | DSP_laforin-like | 290 | 436 | IPR045204 | GO:0019203|GO:0046838 | |
Cme04g01886 | 591 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 283 | 429 | IPR029021 | - | |
Cme04g01886 | 591 | Pfam | Dual specificity phosphatase, catalytic domain | 300 | 423 | IPR000340 | GO:0008138|GO:0016311 | |
Cme04g01886 | 591 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 291 | 450 | IPR020422 | GO:0006470|GO:0008138 | |
Cme04g01886 | 591 | Gene3D | Immunoglobulins | 445 | 541 | IPR013783 | - | |
Cme04g01886 | 591 | SUPERFAMILY | PDZ domain-like | 59 | 163 | IPR036034 | GO:0005515 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme04g01886 | Cme-Chr4:26538163 | Cme10g00122 | Cme-Chr10:855992 | 1.00E-29 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme04g01886 | - | - | csv:101214241 | 1151.73 |