Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01886 ATGGCGGTTCTGCAGCTTCCTTGTGTGGGGATTATTGATTATTCATCTTCCCCATTGTTGAGAGCAAGTAAATCGTCGTTGTTTTGGGGAAGAGATTTATGCTTTGGAAATGGGGGTATTAGGGATGGTCCGAGACCGAGAGCTTCATTCAATGGTCGAGTTCTTAAGATTTTCGCCATGTCCGATACTTCTTCTTCATCGTTTAAGATGAATCTCAATGAATACATGGTTACGCTTGAGAAGCCGCTCGGCATTCGGTTTGCGATTTCCGTCGATGGAAGAATCTTCGTTCATTCGCTTAAGAAAGGGGGTAATGCTGAGAAGTCAAGAATAATCATGGTGGGGGACACTTTAAAGAAGGCAAGCGATTCATCAGGCGTCAATCTCATTGAGATTAAAGACTTTGTATTTGGTTTCTTCAGGATGATGCTGAAGGAGAAAACGGGATCTTTTAGCCTGGTTCTTGAAAGACCTTTTTCTCCTTTTCCTATTCAACAGCTTCTACTTTCAAACGATTTAGAAATTTTGTTTAATAGAGGTCGAGTGCCTATTGCTACTTGGAAGAAAGAAATTTTGGCATCAAATTTACAAACATCTGATGAAAGCAGTGGGAACTCTGGCTTTGCGGCTTTCTCCTCTAAGTTCTTAACATCAGAAGGTTGGAAACTTCTTAGAGATCAAAATGAAGATACAAAATCACATATACAGAGAAACATTCTCGCACCTCAAATCGGCCAACTTGTTGGTATATTTACTGAAGATGAGCCTGGAGATGGAGAATGGGCTCATGGGAGCTTCCCCCTAGATGAATATGTCAAGGCGTTAGAACGGTCTAAAGGGGAGCTATATTATGATCACTCTCGTGGTATGAGCTATAGTAAGATCACGGAGCAAATCTATGTGGGGTCATGTATACAGACGGAAGCAGATGTTGAGGCTTTGTCAAATAACGTGGGAGTCACCGCTGTACTGAATTTTCAAAGTGCAACTGAGGCAGAAAACTGGGGGATTAATGCCAAGTTAATCAACGAGTCATGCCAAAAATTTGATATTCTAATGATCAGCTATCCTATCAGGGAAGGAGATTCTTATGATTTGAGGAAAAAACTACCATTCTGTGTGGGTCTACTTCTACGACTGTTAAAAAAGAACCATCGAGTTTTTATAACTTGTACCTCTGGTTTTGATCGATCTCCAGCCAGTGTGATTGCATATCTACACTGGATGACCGATACTTCTCTTCATGCAGCCTATAATTTTATCACCAGTTTGCATTCCTGCAAACCTGACAGGCCTGCTATCGCTTGGGCTACCTGGGATCTCATAGCAATGGTGGAAAATGGAAGGCATGATGGACCTCCCACTCATGCCGTCACTTTCGTATGGAATGGACAAGAGGGGGAGGATGTAAATTTGGTTGGAGATTTTACTGGTAACTGGAAAGAACCGGTCAAGGCTAGTCACAAGGGTGGACCTAGATATGAAGCAGAAATGAAACTTCCTCAGGGGAAGTATTACTATAAGTACATCACAAATGGTCAGTGGAGGCACTCAACATCTTCACCTGCTGAAAGAGACGAAAGGGGGAATGTCAACAATGTAATAGTCATCGGTGACACTGCCAGTGTTAGGCCTTCAGTTCAGCCGCAAAAGAAAGATGCAAATATTGTGAAGGTAATTGAAAGACCATTGACAGAAAACGAGCGGTTTATGTTGGCGAAAGCGGCTAGGTGTGTTGCATTTTCAGTATGTCCAATTAGACTAACTCCTAAGTAG 1776 42.17 MAVLQLPCVGIIDYSSSPLLRASKSSLFWGRDLCFGNGGIRDGPRPRASFNGRVLKIFAMSDTSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIFVHSLKKGGNAEKSRIIMVGDTLKKASDSSGVNLIEIKDFVFGFFRMMLKEKTGSFSLVLERPFSPFPIQQLLLSNDLEILFNRGRVPIATWKKEILASNLQTSDESSGNSGFAAFSSKFLTSEGWKLLRDQNEDTKSHIQRNILAPQIGQLVGIFTEDEPGDGEWAHGSFPLDEYVKALERSKGELYYDHSRGMSYSKITEQIYVGSCIQTEADVEALSNNVGVTAVLNFQSATEAENWGINAKLINESCQKFDILMISYPIREGDSYDLRKKLPFCVGLLLRLLKKNHRVFITCTSGFDRSPASVIAYLHWMTDTSLHAAYNFITSLHSCKPDRPAIAWATWDLIAMVENGRHDGPPTHAVTFVWNGQEGEDVNLVGDFTGNWKEPVKASHKGGPRYEAEMKLPQGKYYYKYITNGQWRHSTSSPAERDERGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26538163 26543517 + MELO3C009960.2.1 Cme04g01886 326147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01886 591 ProSiteProfiles PDZ domain profile. 76 159 IPR001478 GO:0005515
Cme04g01886 591 CDD E_set_AMPKbeta_like_N 458 537 - -
Cme04g01886 591 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 28 590 IPR030066 GO:0005983
Cme04g01886 591 SUPERFAMILY E set domains 455 538 IPR014756 -
Cme04g01886 591 Pfam Glycogen recognition site of AMP-activated protein kinase 458 539 IPR032640 -
Cme04g01886 591 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 28 590 - -
Cme04g01886 591 Gene3D Protein tyrosine phosphatase superfamily 284 550 IPR029021 -
Cme04g01886 591 CDD DSP_laforin-like 290 436 IPR045204 GO:0019203|GO:0046838
Cme04g01886 591 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 283 429 IPR029021 -
Cme04g01886 591 Pfam Dual specificity phosphatase, catalytic domain 300 423 IPR000340 GO:0008138|GO:0016311
Cme04g01886 591 ProSiteProfiles Dual specificity protein phosphatase domain profile. 291 450 IPR020422 GO:0006470|GO:0008138
Cme04g01886 591 Gene3D Immunoglobulins 445 541 IPR013783 -
Cme04g01886 591 SUPERFAMILY PDZ domain-like 59 163 IPR036034 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01886 Cme-Chr4:26538163 Cme10g00122 Cme-Chr10:855992 1.00E-29 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01886 - - csv:101214241 1151.73