Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme04g01893 | ATGAAAGAAAAGAGTGAAAGTGGAGGTGGGTATGTGAGAGCAGATCAAATAGATCTGAAGAGCTTAGATGAGCAGTTACAGAGACATTTGAGCAAAGCATGGACTATGGAGAAGAACAAGAGGAGGGAAGATGAGGAAGGTGTCGGCATCGGCGGCGGTGGCGGTGGTGGCGGAGGAGGAGGTGTTGGCGGTGGAAGACCGGCAATCACTAGACAGGAGTGGGAGATTGACCCTTCTAAACTCATCATCAAAGCTGTCATAGCTCGTGGCACATTTGGAACTGTTCATCGTGGAGTTTATGATGGTCAAGATGTTGCTGTTAAACTTCTTGACTGGGGAGAAGAGGGTCATAGGTCAGAGGCAGAAATTGCGTCGCTTAGAGCGGCTTTTACGCAAGAAGTTGCTGTTTGGCACAAGCTTGACCATCCTAATGTTACAAAGTTTATAGGAGCAACAATAGGCTCCTCAGATCTACACATACAAACAGAAAATGGCCAAATTGGCATGCCCAGCAATATTTGTTGTGTCGTTGTCGAATATTGTCCTGGAGGTGCTCTGAAATCCTACCTCATAAAGAACAGAAGGAAAAAGCTGGCTTTCAAAGTAGTCGTCCAGCTAGCATTAGACCTTGCAAGAGGGTTGAGCTATCTTCATTCACAGAAGATTGTTCATAGAGATGTCAAAACAGAAAATATGCTTCTGGACAAAACGAGAACGGTAAAAATTGCAGACTTTGGCGTTGCTCGTGTTGAAGCCTCAAATCCCAATGATATGACTGGTGAGACCGGAACACTTGGGTATATGGCTCCGGAGGTTCTCAATGGCAATCCATATAACAGGAAATGTGATGTCTACAGCTTCGGCATCTGTTTATGGGAGATATACTGCTGCGATATGCCGTATCCCGACCTTAGCTTCTCAGAAGTTACATCAGCTGTTGTCCGACAGAATCTGAGGCCAGAGATTCCTCGGTGTTGCCCCAGCTCGCTTGCAAATGTAATGAAGCGATGCTGGGATGCTAACCCGGACAAGCGTCCAGAGATGGATGAGGTTGTAACCATGTTGGAAGCAATCGATACATCGAAGGGCGGAGGTATGATCCCCCTCGATCAGTCACAAGGCTGTTTTTGCTTCCGTAGGTACCGGGGGCCTTGA | 1155 | 47.01 | MKEKSESGGGYVRADQIDLKSLDEQLQRHLSKAWTMEKNKRREDEEGVGIGGGGGGGGGGGVGGGRPAITRQEWEIDPSKLIIKAVIARGTFGTVHRGVYDGQDVAVKLLDWGEEGHRSEAEIASLRAAFTQEVAVWHKLDHPNVTKFIGATIGSSDLHIQTENGQIGMPSNICCVVVEYCPGGALKSYLIKNRRKKLAFKVVVQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDANPDKRPEMDEVVTMLEAIDTSKGGGMIPLDQSQGCFCFRRYRGP | 384 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 26601405 | 26605447 | + | MELO3C009953.2.1 | Cme04g01893 | 326154 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme04g01893 | 384 | Gene3D | Phosphorylase Kinase; domain 1 | 68 | 165 | - | - | |
Cme04g01893 | 384 | SUPERFAMILY | Protein kinase-like (PK-like) | 67 | 355 | IPR011009 | - | |
Cme04g01893 | 384 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 222 | 234 | IPR008271 | GO:0004672|GO:0006468 | |
Cme04g01893 | 384 | SMART | serkin_6 | 81 | 358 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme04g01893 | 384 | Gene3D | Transferase(Phosphotransferase) domain 1 | 181 | 371 | - | - | |
Cme04g01893 | 384 | PRINTS | Tyrosine kinase catalytic domain signature | 178 | 191 | IPR001245 | GO:0004672|GO:0006468 | |
Cme04g01893 | 384 | PRINTS | Tyrosine kinase catalytic domain signature | 216 | 234 | IPR001245 | GO:0004672|GO:0006468 | |
Cme04g01893 | 384 | PRINTS | Tyrosine kinase catalytic domain signature | 282 | 304 | IPR001245 | GO:0004672|GO:0006468 | |
Cme04g01893 | 384 | PRINTS | Tyrosine kinase catalytic domain signature | 326 | 348 | IPR001245 | GO:0004672|GO:0006468 | |
Cme04g01893 | 384 | ProSiteProfiles | Protein kinase domain profile. | 81 | 358 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme04g01893 | 384 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 1 | 378 | - | - | |
Cme04g01893 | 384 | PANTHER | DUAL-SPECIFICITY KINASE TKL-PL-4 FAMILY-RELATED | 1 | 378 | - | - | |
Cme04g01893 | 384 | CDD | STKc_MAP3K-like | 87 | 355 | - | - | |
Cme04g01893 | 384 | MobiDBLite | consensus disorder prediction | 32 | 48 | - | - | |
Cme04g01893 | 384 | MobiDBLite | consensus disorder prediction | 32 | 68 | - | - | |
Cme04g01893 | 384 | Pfam | Protein tyrosine and serine/threonine kinase | 83 | 355 | IPR001245 | GO:0004672|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme01g02042 | Cme-Chr1:29154890 | Cme04g01893 | Cme-Chr4:26601405 | 2.80E-161 | dispersed | |
Cme04g01893 | Cme-Chr4:26601405 | Cme06g00588 | Cme-Chr6:3781618 | 5.53E-177 | dispersed | |
Cme12g01700 | Cme-Chr12:23879671 | Cme04g01893 | Cme-Chr4:26601405 | 7.68E-09 | wgd | |
Cme02g01961 | Cme-Chr2:25864064 | Cme04g01893 | Cme-Chr4:26601405 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64831 | PF07714 | PK_Tyr_Ser-Thr | 2.60E-64 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme04g01893 | - | - | csv:101212631 | 751.51 |