Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01893 ATGAAAGAAAAGAGTGAAAGTGGAGGTGGGTATGTGAGAGCAGATCAAATAGATCTGAAGAGCTTAGATGAGCAGTTACAGAGACATTTGAGCAAAGCATGGACTATGGAGAAGAACAAGAGGAGGGAAGATGAGGAAGGTGTCGGCATCGGCGGCGGTGGCGGTGGTGGCGGAGGAGGAGGTGTTGGCGGTGGAAGACCGGCAATCACTAGACAGGAGTGGGAGATTGACCCTTCTAAACTCATCATCAAAGCTGTCATAGCTCGTGGCACATTTGGAACTGTTCATCGTGGAGTTTATGATGGTCAAGATGTTGCTGTTAAACTTCTTGACTGGGGAGAAGAGGGTCATAGGTCAGAGGCAGAAATTGCGTCGCTTAGAGCGGCTTTTACGCAAGAAGTTGCTGTTTGGCACAAGCTTGACCATCCTAATGTTACAAAGTTTATAGGAGCAACAATAGGCTCCTCAGATCTACACATACAAACAGAAAATGGCCAAATTGGCATGCCCAGCAATATTTGTTGTGTCGTTGTCGAATATTGTCCTGGAGGTGCTCTGAAATCCTACCTCATAAAGAACAGAAGGAAAAAGCTGGCTTTCAAAGTAGTCGTCCAGCTAGCATTAGACCTTGCAAGAGGGTTGAGCTATCTTCATTCACAGAAGATTGTTCATAGAGATGTCAAAACAGAAAATATGCTTCTGGACAAAACGAGAACGGTAAAAATTGCAGACTTTGGCGTTGCTCGTGTTGAAGCCTCAAATCCCAATGATATGACTGGTGAGACCGGAACACTTGGGTATATGGCTCCGGAGGTTCTCAATGGCAATCCATATAACAGGAAATGTGATGTCTACAGCTTCGGCATCTGTTTATGGGAGATATACTGCTGCGATATGCCGTATCCCGACCTTAGCTTCTCAGAAGTTACATCAGCTGTTGTCCGACAGAATCTGAGGCCAGAGATTCCTCGGTGTTGCCCCAGCTCGCTTGCAAATGTAATGAAGCGATGCTGGGATGCTAACCCGGACAAGCGTCCAGAGATGGATGAGGTTGTAACCATGTTGGAAGCAATCGATACATCGAAGGGCGGAGGTATGATCCCCCTCGATCAGTCACAAGGCTGTTTTTGCTTCCGTAGGTACCGGGGGCCTTGA 1155 47.01 MKEKSESGGGYVRADQIDLKSLDEQLQRHLSKAWTMEKNKRREDEEGVGIGGGGGGGGGGGVGGGRPAITRQEWEIDPSKLIIKAVIARGTFGTVHRGVYDGQDVAVKLLDWGEEGHRSEAEIASLRAAFTQEVAVWHKLDHPNVTKFIGATIGSSDLHIQTENGQIGMPSNICCVVVEYCPGGALKSYLIKNRRKKLAFKVVVQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDANPDKRPEMDEVVTMLEAIDTSKGGGMIPLDQSQGCFCFRRYRGP 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26601405 26605447 + MELO3C009953.2.1 Cme04g01893 326154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01893 384 Gene3D Phosphorylase Kinase; domain 1 68 165 - -
Cme04g01893 384 SUPERFAMILY Protein kinase-like (PK-like) 67 355 IPR011009 -
Cme04g01893 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Cme04g01893 384 SMART serkin_6 81 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g01893 384 Gene3D Transferase(Phosphotransferase) domain 1 181 371 - -
Cme04g01893 384 PRINTS Tyrosine kinase catalytic domain signature 178 191 IPR001245 GO:0004672|GO:0006468
Cme04g01893 384 PRINTS Tyrosine kinase catalytic domain signature 216 234 IPR001245 GO:0004672|GO:0006468
Cme04g01893 384 PRINTS Tyrosine kinase catalytic domain signature 282 304 IPR001245 GO:0004672|GO:0006468
Cme04g01893 384 PRINTS Tyrosine kinase catalytic domain signature 326 348 IPR001245 GO:0004672|GO:0006468
Cme04g01893 384 ProSiteProfiles Protein kinase domain profile. 81 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g01893 384 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 378 - -
Cme04g01893 384 PANTHER DUAL-SPECIFICITY KINASE TKL-PL-4 FAMILY-RELATED 1 378 - -
Cme04g01893 384 CDD STKc_MAP3K-like 87 355 - -
Cme04g01893 384 MobiDBLite consensus disorder prediction 32 48 - -
Cme04g01893 384 MobiDBLite consensus disorder prediction 32 68 - -
Cme04g01893 384 Pfam Protein tyrosine and serine/threonine kinase 83 355 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02042 Cme-Chr1:29154890 Cme04g01893 Cme-Chr4:26601405 2.80E-161 dispersed
Cme04g01893 Cme-Chr4:26601405 Cme06g00588 Cme-Chr6:3781618 5.53E-177 dispersed
Cme12g01700 Cme-Chr12:23879671 Cme04g01893 Cme-Chr4:26601405 7.68E-09 wgd
Cme02g01961 Cme-Chr2:25864064 Cme04g01893 Cme-Chr4:26601405 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64831 PF07714 PK_Tyr_Ser-Thr 2.60E-64 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01893 - - csv:101212631 751.51