Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme04g01900 | ATGGAATCTGGTCGGTTCTTGTTTAATCCGCCACCTTATGGCGGGAACATGCTTTACCTTGGTGGAGCCGGCGGCGATCCTTGTCTGCGAGGAGGAAGAACAATGATGAGCATGAGCATGAATGAAAGTCCAAAAGGGAGGCCATTTTTTAGATCCCCCGATGATCTTTACGATGATGAATATTATGATGAGTTTTACCCCGAGAAGAAGCGTCGTCTCACCCACGACCAGGTCCAAATGCTGGAGAAGAACTTTGAGGAAGAGAACAAACTGGAGCCAGAGAGGAAATCCCAACTGGCCAAGAAGCTGGGGCTGCAACCGAGGCAGGTGGCTGTGTGGTTCCAGAATCGTCGAGCTCGGTGGAAGACAAAGCAACTGGAAAGGGACTACGATGTTCTTAAAGCTTCATATGATTCGCTTGTGTCCAACTATGACGCAATAGTCAAAGAGAATGCAGTTCTTAAATCTGAGGTGGCCTCGTTAACTGAGAAATGTCTAGCTAAAGAGCTAGATGGAGGAGAAGCAACAATTCCATCTATAACATCAGAGCTTCTTCTAGCAGACATCACCAATATCTCCATCCCACAGTCTGGCAGAAAGGCTGAAGATCGTCTTAGTTCAGGGAGTGATAGCAGTGCAGTGGTCGACGATAATTGTCCACAGCTCATCGACAGTGGTGATTCGTACTTCCCCAGCATCGAGTATCCACAATGTGCACATCTGCCTAATGGGTTGCAAATGGAAGACAACGATACGAACGACAATAGCAACTACTTGTTCTCGGATATGTTTGCAACAACAAACCAACAGAGTCAAGAAGGAAGGCCTCCAGCTTGGTGGGCGTGGTCTTAG | 852 | 47.54 | MESGRFLFNPPPYGGNMLYLGGAGGDPCLRGGRTMMSMSMNESPKGRPFFRSPDDLYDDEYYDEFYPEKKRRLTHDQVQMLEKNFEEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDSLVSNYDAIVKENAVLKSEVASLTEKCLAKELDGGEATIPSITSELLLADITNISIPQSGRKAEDRLSSGSDSSAVVDDNCPQLIDSGDSYFPSIEYPQCAHLPNGLQMEDNDTNDNSNYLFSDMFATTNQQSQEGRPPAWWAWS | 283 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 26702265 | 26706130 | + | MELO3C009948.2.1 | Cme04g01900 | 326161 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme04g01900 | 283 | PRINTS | Lambda-repressor HTH signature | 95 | 104 | IPR000047 | GO:0003677 | |
| Cme04g01900 | 283 | PRINTS | Lambda-repressor HTH signature | 104 | 120 | IPR000047 | GO:0003677 | |
| Cme04g01900 | 283 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 1 | 257 | IPR045224 | GO:0003700 | |
| Cme04g01900 | 283 | Pfam | Homeodomain | 69 | 122 | IPR001356 | GO:0003677 | |
| Cme04g01900 | 283 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 | 1 | 257 | - | - | |
| Cme04g01900 | 283 | SMART | HOX_1 | 67 | 128 | IPR001356 | GO:0003677 | |
| Cme04g01900 | 283 | Pfam | Homeobox associated leucine zipper | 124 | 164 | IPR003106 | GO:0006355|GO:0043565 | |
| Cme04g01900 | 283 | MobiDBLite | consensus disorder prediction | 197 | 217 | - | - | |
| Cme04g01900 | 283 | ProSitePatterns | 'Homeobox' domain signature. | 99 | 122 | IPR017970 | GO:0000981|GO:0006355 | |
| Cme04g01900 | 283 | Coils | Coil | 144 | 164 | - | - | |
| Cme04g01900 | 283 | ProSiteProfiles | 'Homeobox' domain profile. | 64 | 124 | IPR001356 | GO:0003677 | |
| Cme04g01900 | 283 | CDD | homeodomain | 69 | 125 | IPR001356 | GO:0003677 | |
| Cme04g01900 | 283 | SUPERFAMILY | Homeodomain-like | 65 | 126 | IPR009057 | - | |
| Cme04g01900 | 283 | Gene3D | - | 67 | 130 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cme04g01900 | Cme09g00366 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme04g00266 | Cme-Chr4:2119143 | Cme04g01900 | Cme-Chr4:26702265 | 1.47E-37 | dispersed | |
| Cme04g01900 | Cme-Chr4:26702265 | Cme12g01748 | Cme-Chr12:24189271 | 2.43E-46 | dispersed | |
| Cme07g01707 | Cme-Chr7:22615160 | Cme04g01900 | Cme-Chr4:26702265 | 4.51E-25 | dispersed | |
| Cme04g01900 | Cme-Chr4:26702265 | Cme09g00366 | Cme-Chr9:3134032 | 2.60E-88 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 41219 | PF00046 | Homeodomain | 4.40E-18 | CL0123 | Cme | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme04g01900 | K09338 | - | csv:101212142 | 512.686 |